RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 TRHP20396 242 aaPredicted RBP11.05□□□□□ -0.64
MCF2-206ENST00000446225 TRIM41Q8WV44 630 aa11.05□□□□□ -0.64
MCF2-206ENST00000446225 BRPF1P55201 1214 aaPredicted RBP11.04□□□□□ -0.64
MCF2-206ENST00000446225 RNF25Q96BH1 459 aaPredicted RBP11.01□□□□□ -0.65
MCF2-206ENST00000446225 MYO15BQ96JP2 1530 aa11.01□□□□□ -0.65
MCF2-206ENST00000446225 LMOD2Q6P5Q4 547 aa10.99□□□□□ -0.65
MCF2-206ENST00000446225 P3H3Q8IVL6 736 aa10.99□□□□□ -0.65
MCF2-206ENST00000446225 DCAF1Q9Y4B6 1507 aa10.99□□□□□ -0.65
MCF2-206ENST00000446225 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
MCF2-206ENST00000446225 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.96□□□□□ -0.65
MCF2-206ENST00000446225 ZBTB12Q9Y330 459 aaPredicted RBP10.95□□□□□ -0.66
MCF2-206ENST00000446225 UBTFP17480 764 aaKnown RBP10.94□□□□□ -0.66
MCF2-206ENST00000446225 PLEKHG5O94827 1062 aa10.94□□□□□ -0.66
MCF2-206ENST00000446225 ZNF692Q9BU19 519 aaPredicted RBP10.94□□□□□ -0.66
MCF2-206ENST00000446225 SPINK5Q9NQ38 1064 aaPredicted RBP10.93□□□□□ -0.66
MCF2-206ENST00000446225 NEUROD2Q15784 382 aa10.92□□□□□ -0.66
MCF2-206ENST00000446225 STK25O00506 426 aa10.88□□□□□ -0.67
MCF2-206ENST00000446225 RIOK3O14730 519 aaKnown RBP10.88□□□□□ -0.67
MCF2-206ENST00000446225 TRIM26Q12899 539 aaPredicted RBP10.88□□□□□ -0.67
MCF2-206ENST00000446225 PABPN1Q86U42 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
MCF2-206ENST00000446225 NPM2Q86SE8 214 aaKnown RBP10.85□□□□□ -0.67
MCF2-206ENST00000446225 KCNV2Q8TDN2 545 aa10.85□□□□□ -0.67
MCF2-206ENST00000446225 GSE1Q14687 1217 aa10.84□□□□□ -0.67
MCF2-206ENST00000446225 RYDENQ9NUL5 291 aaKnown RBP10.83□□□□□ -0.68
MCF2-206ENST00000446225 CAPN15O75808 1086 aa10.82□□□□□ -0.68
MCF2-206ENST00000446225 SSUH2Q9Y2M2 353 aa10.81□□□□□ -0.68
MCF2-206ENST00000446225 ZC3H15Q8WU90 426 aaKnown RBP10.79□□□□□ -0.68
MCF2-206ENST00000446225 WDR70Q9NW82 654 aa10.79□□□□□ -0.68
MCF2-206ENST00000446225 SCRIBQ14160 1630 aa10.78□□□□□ -0.68
MCF2-206ENST00000446225 SLC24A3Q9HC58 644 aa10.78□□□□□ -0.68
MCF2-206ENST00000446225 UNC13AQ9UPW8 1703 aa10.77□□□□□ -0.69
MCF2-206ENST00000446225 VGFO15240 615 aaPredicted RBP10.77□□□□□ -0.69
MCF2-206ENST00000446225 SPDYE2BA6NHP3 402 aa10.76□□□□□ -0.69
MCF2-206ENST00000446225 SPDYE6P0CI01 402 aa10.76□□□□□ -0.69
MCF2-206ENST00000446225 HRCP23327 699 aa10.76□□□□□ -0.69
MCF2-206ENST00000446225 SPDYE2Q495Y8 402 aa10.76□□□□□ -0.69
MCF2-206ENST00000446225 BICRAQ9NZM4 1560 aa10.75□□□□□ -0.69
MCF2-206ENST00000446225 ABCB7O75027 752 aa10.73□□□□□ -0.69
MCF2-206ENST00000446225 STK24Q9Y6E0 443 aa10.73□□□□□ -0.69
MCF2-206ENST00000446225 BCL11BQ9C0K0 894 aaPredicted RBP10.72□□□□□ -0.69
MCF2-206ENST00000446225 ZMYND15Q9H091 742 aa10.72□□□□□ -0.69
MCF2-206ENST00000446225 OSCARQ8IYS5 282 aa10.71□□□□□ -0.69
MCF2-206ENST00000446225 DCAF8Q5TAQ9 597 aa10.7□□□□□ -0.7
MCF2-206ENST00000446225 RSPH6AQ9H0K4 717 aa10.7□□□□□ -0.7
MCF2-206ENST00000446225 NUBP1P53384 320 aa10.67□□□□□ -0.7
MCF2-206ENST00000446225 CADPS2Q86UW7 1296 aa10.67□□□□□ -0.7
MCF2-206ENST00000446225 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.66□□□□□ -0.7
MCF2-206ENST00000446225 ZFP91Q96JP5 570 aaPredicted RBP10.66□□□□□ -0.7
MCF2-206ENST00000446225 SHROOM4Q9ULL8 1493 aa10.65□□□□□ -0.7
MCF2-206ENST00000446225 ARID3AQ99856 593 aa10.65□□□□□ -0.7
MCF2-206ENST00000446225 SGIP1Q9BQI5 828 aa10.64□□□□□ -0.71
MCF2-206ENST00000446225 ARHGEF1Q92888 912 aaKnown RBP10.62□□□□□ -0.71
MCF2-206ENST00000446225 ZMYND10O75800 440 aa10.59□□□□□ -0.71
MCF2-206ENST00000446225 SEMA3EO15041 775 aa10.58□□□□□ -0.72
MCF2-206ENST00000446225 FAM212AQ96EL1 285 aa10.58□□□□□ -0.72
MCF2-206ENST00000446225 TESPA1A2RU30 521 aaPredicted RBP10.56□□□□□ -0.72
MCF2-206ENST00000446225 CHRM1P11229 460 aaPredicted RBP10.56□□□□□ -0.72
MCF2-206ENST00000446225 C1orf115Q9H7X2 142 aa10.54□□□□□ -0.72
MCF2-206ENST00000446225 IL27Q8NEV9 243 aa10.53□□□□□ -0.72
MCF2-206ENST00000446225 GPBP1L1Q9HC44 474 aaPredicted RBP10.53□□□□□ -0.72
MCF2-206ENST00000446225 E2F4Q16254 413 aa10.5□□□□□ -0.73
MCF2-206ENST00000446225 CCDC9Q9Y3X0 531 aaKnown RBP10.5□□□□□ -0.73
MCF2-206ENST00000446225 ZBTB7CA1YPR0 619 aa10.5□□□□□ -0.73
MCF2-206ENST00000446225 BARGINQ6ZT62 677 aa10.48□□□□□ -0.73
MCF2-206ENST00000446225 PDIA4P13667 645 aaKnown RBP10.46□□□□□ -0.73
MCF2-206ENST00000446225 ARID3CA6NKF2 412 aa10.46□□□□□ -0.74
MCF2-206ENST00000446225 SMYD5Q6GMV2 418 aa10.46□□□□□ -0.74
MCF2-206ENST00000446225 AK7Q96M32 723 aa10.46□□□□□ -0.74
MCF2-206ENST00000446225 RNF39Q9H2S5 420 aa10.46□□□□□ -0.74
MCF2-206ENST00000446225 EIF4G1Q04637 1599 aaKnown RBP10.44□□□□□ -0.74
MCF2-206ENST00000446225 APBB1O00213 710 aa10.44□□□□□ -0.74
MCF2-206ENST00000446225 PYGBP11216 843 aa10.44□□□□□ -0.74
MCF2-206ENST00000446225 KDM4CQ9H3R0 1056 aa10.44□□□□□ -0.74
MCF2-206ENST00000446225 CECR2Q9BXF3 1484 aa10.42□□□□□ -0.74
MCF2-206ENST00000446225 MKRN3Q13064 507 aaKnown RBP10.41□□□□□ -0.74
MCF2-206ENST00000446225 RASEFQ8IZ41 740 aa10.4□□□□□ -0.74
MCF2-206ENST00000446225 TTBK1Q5TCY1 1321 aaPredicted RBP10.4□□□□□ -0.75
MCF2-206ENST00000446225 CC2D2AQ9P2K1 1620 aa10.39□□□□□ -0.75
MCF2-206ENST00000446225 KRI1Q8N9T8 703 aaKnown RBP10.38□□□□□ -0.75
MCF2-206ENST00000446225 C1QBPQ07021 282 aaKnown RBP10.37□□□□□ -0.75
MCF2-206ENST00000446225 NECTIN2Q92692 538 aa10.37□□□□□ -0.75
MCF2-206ENST00000446225 DSG3P32926 999 aa10.35□□□□□ -0.75
MCF2-206ENST00000446225 MFRPQ9BY79 579 aa10.35□□□□□ -0.75
MCF2-206ENST00000446225 MNX1P50219 401 aaPredicted RBP10.33□□□□□ -0.76
MCF2-206ENST00000446225 PDE4DQ08499 809 aa10.33□□□□□ -0.76
MCF2-206ENST00000446225 GPIHBP1Q8IV16 184 aa10.31□□□□□ -0.76
MCF2-206ENST00000446225 TRIM66O15016 1216 aa10.31□□□□□ -0.76
MCF2-206ENST00000446225 SMARCA4P51532 1647 aa10.3□□□□□ -0.76
MCF2-206ENST00000446225 BAZ1AQ9NRL2 1556 aaPredicted RBP10.3□□□□□ -0.76
MCF2-206ENST00000446225 MROH2BQ7Z745 1585 aa10.29□□□□□ -0.76
MCF2-206ENST00000446225 FLIIQ13045 1269 aa10.29□□□□□ -0.76
MCF2-206ENST00000446225 PPP1R37O75864 691 aa10.29□□□□□ -0.76
MCF2-206ENST00000446225 RBM26Q5T8P6 1007 aaKnown RBP10.29□□□□□ -0.76
MCF2-206ENST00000446225 PELP1Q8IZL8 1130 aaKnown RBP10.29□□□□□ -0.76
MCF2-206ENST00000446225 CCDC82Q8N4S0 544 aa10.29□□□□□ -0.76
MCF2-206ENST00000446225 CREBZFQ9NS37 354 aa10.29□□□□□ -0.76
MCF2-206ENST00000446225 ZNF316A6NFI3 1004 aaPredicted RBP10.27□□□□□ -0.76
MCF2-206ENST00000446225 FAM117AQ9C073 453 aa10.27□□□□□ -0.76
MCF2-206ENST00000446225 ZNF467Q7Z7K2 595 aaPredicted RBP10.27□□□□□ -0.77
MCF2-206ENST00000446225 ATAD2BQ9ULI0 1458 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms