RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 GSE1Q14687 1217 aa13.98□□□□□ -0.17
USP40-202ENST00000409945 CFAP44Q96MT7 982 aa13.96□□□□□ -0.18
USP40-202ENST00000409945 FAM212AQ96EL1 285 aa13.95□□□□□ -0.18
USP40-202ENST00000409945 PYGBP11216 843 aa13.92□□□□□ -0.18
USP40-202ENST00000409945 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
USP40-202ENST00000409945 KDM2AQ9Y2K7 1162 aa13.9□□□□□ -0.18
USP40-202ENST00000409945 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.9□□□□□ -0.18
USP40-202ENST00000409945 NKX1-1Q15270 411 aaPredicted RBP13.89□□□□□ -0.19
USP40-202ENST00000409945 HS6ST3Q8IZP7 471 aa13.88□□□□□ -0.19
USP40-202ENST00000409945 RIOK3O14730 519 aaKnown RBP13.88□□□□□ -0.19
USP40-202ENST00000409945 FARP1Q9Y4F1 1045 aaPredicted RBP13.87□□□□□ -0.19
USP40-202ENST00000409945 PRKAR2AP13861 404 aaKnown RBP13.85□□□□□ -0.19
USP40-202ENST00000409945 TSPYL2Q9H2G4 693 aaPredicted RBP13.84□□□□□ -0.19
USP40-202ENST00000409945 TSHZ2Q9NRE2 1034 aa13.84□□□□□ -0.19
USP40-202ENST00000409945 FXR2P51116 673 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP40-202ENST00000409945 SPRYD3Q8NCJ5 442 aa13.81□□□□□ -0.2
USP40-202ENST00000409945 CHRM1P11229 460 aaPredicted RBP13.8□□□□□ -0.2
USP40-202ENST00000409945 STK25O00506 426 aa13.77□□□□□ -0.21
USP40-202ENST00000409945 CHRDL2Q6WN34 429 aa13.77□□□□□ -0.21
USP40-202ENST00000409945 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.76□□□□□ -0.21
USP40-202ENST00000409945 PIP4P2Q8N4L2 257 aa13.76□□□□□ -0.21
USP40-202ENST00000409945 ZFP91Q96JP5 570 aaPredicted RBP13.76□□□□□ -0.21
USP40-202ENST00000409945 VSIG10Q8N0Z9 540 aa13.73□□□□□ -0.21
USP40-202ENST00000409945 BCL11BQ9C0K0 894 aaPredicted RBP13.72□□□□□ -0.21
USP40-202ENST00000409945 VGFO15240 615 aaPredicted RBP13.72□□□□□ -0.21
USP40-202ENST00000409945 DNAJC5Q9H3Z4 198 aa13.72□□□□□ -0.21
USP40-202ENST00000409945 CCDC61Q9Y6R9 512 aa13.72□□□□□ -0.21
USP40-202ENST00000409945 GTPBP6O43824 516 aaPredicted RBP13.7□□□□□ -0.22
USP40-202ENST00000409945 PCDHB8Q9UN66 801 aa13.7□□□□□ -0.22
USP40-202ENST00000409945 PCDHB13Q9Y5F0 798 aa13.7□□□□□ -0.22
USP40-202ENST00000409945 STK24Q9Y6E0 443 aa13.68□□□□□ -0.22
USP40-202ENST00000409945 SGIP1Q9BQI5 828 aa13.62□□□□□ -0.23
USP40-202ENST00000409945 IFNL1Q8IU54 200 aa13.57□□□□□ -0.24
USP40-202ENST00000409945 MAP3K13O43283 966 aa13.56□□□□□ -0.24
USP40-202ENST00000409945 TAOK2Q9UL54 1235 aa13.56□□□□□ -0.24
USP40-202ENST00000409945 ZNF467Q7Z7K2 595 aaPredicted RBP13.52□□□□□ -0.24
USP40-202ENST00000409945 KIF12Q96FN5 646 aa13.52□□□□□ -0.24
USP40-202ENST00000409945 PDAP1Q13442 181 aaKnown RBP13.51□□□□□ -0.25
USP40-202ENST00000409945 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
USP40-202ENST00000409945 PSEN1P49768 467 aa13.49□□□□□ -0.25
USP40-202ENST00000409945 BCANQ96GW7 911 aa13.48□□□□□ -0.25
USP40-202ENST00000409945 PRKCSHP14314 528 aaPredicted RBP13.47□□□□□ -0.25
USP40-202ENST00000409945 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
USP40-202ENST00000409945 CD44P16070 742 aaKnown RBP13.47□□□□□ -0.25
USP40-202ENST00000409945 ZRANB1Q9UGI0 708 aa13.46□□□□□ -0.25
USP40-202ENST00000409945 MFRPQ9BY79 579 aa13.45□□□□□ -0.26
USP40-202ENST00000409945 TRPC6Q9Y210 931 aa13.43□□□□□ -0.26
USP40-202ENST00000409945 CADPS2Q86UW7 1296 aa13.42□□□□□ -0.26
USP40-202ENST00000409945 PAK3O75914 559 aaPredicted RBP13.41□□□□□ -0.26
USP40-202ENST00000409945 EFCAB3Q8N7B9 438 aa13.38□□□□□ -0.27
USP40-202ENST00000409945 PPP1R37O75864 691 aa13.37□□□□□ -0.27
USP40-202ENST00000409945 CABP2Q9NPB3 220 aa13.37□□□□□ -0.27
USP40-202ENST00000409945 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
USP40-202ENST00000409945 FBXO22Q8NEZ5 403 aa13.33□□□□□ -0.28
USP40-202ENST00000409945 MS4A3Q96HJ5 214 aa13.33□□□□□ -0.28
USP40-202ENST00000409945 PHF8Q9UPP1 1060 aa13.32□□□□□ -0.28
USP40-202ENST00000409945 EVX2Q03828 476 aa13.3□□□□□ -0.28
USP40-202ENST00000409945 MS4A4AQ96JQ5 239 aa13.26□□□□□ -0.29
USP40-202ENST00000409945 RYDENQ9NUL5 291 aaKnown RBP13.25□□□□□ -0.29
USP40-202ENST00000409945 TPRNQ4KMQ1 711 aa13.22□□□□□ -0.29
USP40-202ENST00000409945 TMEM106CQ9BVX2 250 aa13.22□□□□□ -0.29
USP40-202ENST00000409945 GALR2O43603 387 aaPredicted RBP13.19□□□□□ -0.3
USP40-202ENST00000409945 CCDC180Q9P1Z9 1646 aa13.17□□□□□ -0.3
USP40-202ENST00000409945 NLRP6P59044 892 aa13.15□□□□□ -0.3
USP40-202ENST00000409945 KCNV2Q8TDN2 545 aa13.15□□□□□ -0.3
USP40-202ENST00000409945 SOX12O15370 315 aa13.15□□□□□ -0.3
USP40-202ENST00000409945 TTLL13PA6NNM8 815 aa13.14□□□□□ -0.31
USP40-202ENST00000409945 NBR1Q14596 966 aa13.13□□□□□ -0.31
USP40-202ENST00000409945 BMP2KQ9NSY1 1161 aaPredicted RBP13.13□□□□□ -0.31
USP40-202ENST00000409945 NCKAP5LQ9HCH0 1330 aa13.11□□□□□ -0.31
USP40-202ENST00000409945 HAX1O00165 279 aa13.11□□□□□ -0.31
USP40-202ENST00000409945 TRIM35Q9UPQ4 493 aa13.05□□□□□ -0.32
USP40-202ENST00000409945 TIE1P35590 1138 aa13.04□□□□□ -0.32
USP40-202ENST00000409945 DPY19L2Q6NUT2 758 aa13.04□□□□□ -0.32
USP40-202ENST00000409945 GOLGA2Q08379 1002 aa13.03□□□□□ -0.32
USP40-202ENST00000409945 ILDR1Q86SU0 546 aaPredicted RBP13.03□□□□□ -0.32
USP40-202ENST00000409945 MKRN3Q13064 507 aaKnown RBP13□□□□□ -0.33
USP40-202ENST00000409945 ATN1P54259 1190 aaPredicted RBP13□□□□□ -0.33
USP40-202ENST00000409945 WDR70Q9NW82 654 aa13□□□□□ -0.33
USP40-202ENST00000409945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.331e-7■■■□□ 17.1
USP40-202ENST00000409945 LARP6Q9BRS8 491 aaKnown RBP12.97□□□□□ -0.33
USP40-202ENST00000409945 CRISPLD2Q9H0B8 497 aa12.96□□□□□ -0.33
USP40-202ENST00000409945 P3H3Q8IVL6 736 aa12.95□□□□□ -0.34
USP40-202ENST00000409945 PDCD7Q8N8D1 485 aaKnown RBP12.95□□□□□ -0.34
USP40-202ENST00000409945 ATMINO43313 823 aaPredicted RBP12.92□□□□□ -0.34
USP40-202ENST00000409945 E2F4Q16254 413 aa12.92□□□□□ -0.34
USP40-202ENST00000409945 ABCC9O60706 1549 aa12.9□□□□□ -0.34
USP40-202ENST00000409945 MFSD10Q14728 455 aa12.89□□□□□ -0.35
USP40-202ENST00000409945 ASTLQ6HA08 431 aaPredicted RBP12.88□□□□□ -0.35
USP40-202ENST00000409945 PELP1Q8IZL8 1130 aaKnown RBP12.88□□□□□ -0.35
USP40-202ENST00000409945 SEMA3EO15041 775 aa12.88□□□□□ -0.35
USP40-202ENST00000409945 IRX5P78411 483 aaPredicted RBP12.87□□□□□ -0.35
USP40-202ENST00000409945 GABBR2O75899 941 aa12.86□□□□□ -0.35
USP40-202ENST00000409945 DDX27Q96GQ7 796 aaKnown RBP12.85□□□□□ -0.35
USP40-202ENST00000409945 MICALL2Q8IY33 904 aa12.84□□□□□ -0.35
USP40-202ENST00000409945 PDE4AP27815 886 aa12.84□□□□□ -0.35
USP40-202ENST00000409945 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.84□□□□□ -0.35
USP40-202ENST00000409945 ARHGEF1Q92888 912 aaKnown RBP12.83□□□□□ -0.36
USP40-202ENST00000409945 COLQQ9Y215 455 aaPredicted RBP12.8□□□□□ -0.36
USP40-202ENST00000409945 LMOD2Q6P5Q4 547 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms