RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 CLSTN1O94985 981 aa11.32□□□□□ -0.6
SCN9A-203ENST00000409672 IRX6P78412 446 aaPredicted RBP11.31□□□□□ -0.6
SCN9A-203ENST00000409672 WDR43Q15061 677 aaKnown RBP eCLIP11.31□□□□□ -0.6
SCN9A-203ENST00000409672 SOX12O15370 315 aa11.31□□□□□ -0.6
SCN9A-203ENST00000409672 HNRNPUQ00839 825 aaKnown RBP eCLIP11.3□□□□□ -0.6
SCN9A-203ENST00000409672 MLECQ14165 292 aa11.29□□□□□ -0.6
SCN9A-203ENST00000409672 FKBP8Q14318 412 aa11.29□□□□□ -0.6
SCN9A-203ENST00000409672 CHMP7Q8WUX9 453 aaPredicted RBP11.28□□□□□ -0.6
SCN9A-203ENST00000409672 RGL3Q3MIN7 710 aa11.28□□□□□ -0.6
SCN9A-203ENST00000409672 DDX10Q13206 875 aaKnown RBP11.28□□□□□ -0.6
SCN9A-203ENST00000409672 ISY1Q9ULR0 285 aaKnown RBP11.27□□□□□ -0.6
SCN9A-203ENST00000409672 MYH16Q9H6N6 1097 aa11.25□□□□□ -0.61
SCN9A-203ENST00000409672 TNNT2P45379 298 aaPredicted RBP11.24□□□□□ -0.61
SCN9A-203ENST00000409672 NAP1L2Q9ULW6 460 aaPredicted RBP11.24□□□□□ -0.61
SCN9A-203ENST00000409672 TONSLQ96HA7 1378 aa11.23□□□□□ -0.61
SCN9A-203ENST00000409672 ANO8Q9HCE9 1232 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-203ENST00000409672 NEUROD2Q15784 382 aa11.2□□□□□ -0.62
SCN9A-203ENST00000409672 GOLGA2Q08379 1002 aa11.2□□□□□ -0.62
SCN9A-203ENST00000409672 NCLP19338 710 aaKnown RBP11.2□□□□□ -0.62
SCN9A-203ENST00000409672 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.2□□□□□ -0.62
SCN9A-203ENST00000409672 CCDC9Q9Y3X0 531 aaKnown RBP11.18□□□□□ -0.62
SCN9A-203ENST00000409672 TSPY4P0CV99 314 aa11.18□□□□□ -0.62
SCN9A-203ENST00000409672 TSPY10P0CW01 314 aa11.18□□□□□ -0.62
SCN9A-203ENST00000409672 CCDC136Q96JN2 1154 aa11.17□□□□□ -0.62
SCN9A-203ENST00000409672 RRP7BPQ9NSQ0 103 aa11.17□□□□□ -0.62
SCN9A-203ENST00000409672 ZNF330Q9Y3S2 320 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-203ENST00000409672 PRM3Q9NNZ6 103 aa11.15□□□□□ -0.62
SCN9A-203ENST00000409672 SCRIBQ14160 1630 aa11.14□□□□□ -0.63
SCN9A-203ENST00000409672 SAFB2Q14151 953 aaKnown RBP eCLIP11.12□□□□□ -0.63
SCN9A-203ENST00000409672 PLCB2Q00722 1185 aa11.12□□□□□ -0.63
SCN9A-203ENST00000409672 OS9Q13438 667 aaPredicted RBP11.12□□□□□ -0.63
SCN9A-203ENST00000409672 ZRSR1Q15695 479 aaKnown RBP11.11□□□□□ -0.63
SCN9A-203ENST00000409672 PDE4CQ08493 712 aa11.1□□□□□ -0.63
SCN9A-203ENST00000409672 POGKQ9P215 609 aa11.1□□□□□ -0.63
SCN9A-203ENST00000409672 MRS2Q9HD23 443 aa11.1□□□□□ -0.63
SCN9A-203ENST00000409672 PAK3O75914 559 aaPredicted RBP11.09□□□□□ -0.63
SCN9A-203ENST00000409672 FGD1P98174 961 aa11.08□□□□□ -0.64
SCN9A-203ENST00000409672 CSRNP3Q8WYN3 585 aa11.06□□□□□ -0.64
SCN9A-203ENST00000409672 AEBP2Q6ZN18 517 aaPredicted RBP11.06□□□□□ -0.64
SCN9A-203ENST00000409672 FTSJ3Q8IY81 847 aaKnown RBP11.06□□□□□ -0.64
SCN9A-203ENST00000409672 U2SURPO15042 1029 aaKnown RBP11.05□□□□□ -0.64
SCN9A-203ENST00000409672 DNTTIP2Q5QJE6 756 aaKnown RBP11.04□□□□□ -0.64
SCN9A-203ENST00000409672 PHF23Q9BUL5 403 aaPredicted RBP11.04□□□□□ -0.64
SCN9A-203ENST00000409672 KCNJ4P48050 445 aa11.04□□□□□ -0.64
SCN9A-203ENST00000409672 PTMAP06454 111 aaKnown RBP11.03□□□□□ -0.64
SCN9A-203ENST00000409672 MTUS2Q5JR59 1369 aa11.02□□□□□ -0.65
SCN9A-203ENST00000409672 FRAT1Q92837 279 aaPredicted RBP11.02□□□□□ -0.65
SCN9A-203ENST00000409672 STK26Q9P289 416 aa11.02□□□□□ -0.65
SCN9A-203ENST00000409672 FBXO3Q9UK99 471 aa11.02□□□□□ -0.65
SCN9A-203ENST00000409672 CC2D1BQ5T0F9 858 aaKnown RBP11.01□□□□□ -0.65
SCN9A-203ENST00000409672 KLHL34Q8N239 644 aa11.01□□□□□ -0.65
SCN9A-203ENST00000409672 ERICH6BQ5W0A0 696 aa11□□□□□ -0.65
SCN9A-203ENST00000409672 ERCC6Q03468 1493 aa11□□□□□ -0.65
SCN9A-203ENST00000409672 APBB1O00213 710 aa10.99□□□□□ -0.65
SCN9A-203ENST00000409672 CASC1Q6TDU7 716 aa10.99□□□□□ -0.65
SCN9A-203ENST00000409672 CSB-PGBD3P0DP91 1061 aa10.99□□□□□ -0.65
SCN9A-203ENST00000409672 G3V3G9 751 aa10.99□□□□□ -0.65
SCN9A-203ENST00000409672 DCAF8Q5TAQ9 597 aa10.99□□□□□ -0.65
SCN9A-203ENST00000409672 TRIM44Q96DX7 344 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-203ENST00000409672 MSH5O43196 834 aa10.98□□□□□ -0.65
SCN9A-203ENST00000409672 SPRYD3Q8NCJ5 442 aa10.97□□□□□ -0.65
SCN9A-203ENST00000409672 MAPK8IP3Q9UPT6 1336 aa10.97□□□□□ -0.65
SCN9A-203ENST00000409672 CFAP53Q96M91 514 aa10.96□□□□□ -0.65
SCN9A-203ENST00000409672 PLEKHD1A6NEE1 506 aa10.96□□□□□ -0.65
SCN9A-203ENST00000409672 KNSTRNQ9Y448 316 aa10.96□□□□□ -0.66
SCN9A-203ENST00000409672 WWC1Q8IX03 1113 aa10.96□□□□□ -0.66
SCN9A-203ENST00000409672 TMX4Q9H1E5 349 aaPredicted RBP10.95□□□□□ -0.66
SCN9A-203ENST00000409672 SRPK2P78362 688 aaKnown RBP10.95□□□□□ -0.66
SCN9A-203ENST00000409672 CHMP3Q9Y3E7 222 aa10.95□□□□□ -0.66
SCN9A-203ENST00000409672 KRI1Q8N9T8 703 aaKnown RBP10.94□□□□□ -0.66
SCN9A-203ENST00000409672 NUTM2FA1L443 756 aa10.94□□□□□ -0.66
SCN9A-203ENST00000409672 RGS3P49796 1198 aa10.93□□□□□ -0.66
SCN9A-203ENST00000409672 NUTM2DQ5VT03 806 aaPredicted RBP10.91□□□□□ -0.66
SCN9A-203ENST00000409672 ACIN1Q9UKV3 1341 aaKnown RBP10.91□□□□□ -0.66
SCN9A-203ENST00000409672 GGT6Q6P531 493 aa10.91□□□□□ -0.66
SCN9A-203ENST00000409672 GNL2Q13823 731 aaKnown RBP10.9□□□□□ -0.66
SCN9A-203ENST00000409672 BECN1Q14457 450 aa10.9□□□□□ -0.67
SCN9A-203ENST00000409672 GOLGA6L22H0YM25 854 aa10.89□□□□□ -0.67
SCN9A-203ENST00000409672 VPS53Q5VIR6 699 aa10.89□□□□□ -0.67
SCN9A-203ENST00000409672 CARD11Q9BXL7 1154 aa10.89□□□□□ -0.67
SCN9A-203ENST00000409672 RTN4Q9NQC3 1192 aaKnown RBP10.89□□□□□ -0.67
SCN9A-203ENST00000409672 EIF4G2P78344 907 aaKnown RBP eCLIP10.88□□□□□ -0.67
SCN9A-203ENST00000409672 HSP90AB1P08238 724 aaKnown RBP10.88□□□□□ -0.67
SCN9A-203ENST00000409672 MEX3CQ5U5Q3 659 aaKnown RBP10.88□□□□□ -0.67
SCN9A-203ENST00000409672 CFDP1Q9UEE9 299 aaPredicted RBP10.87□□□□□ -0.67
SCN9A-203ENST00000409672 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
SCN9A-203ENST00000409672 GLIPR1L2Q4G1C9 344 aa10.87□□□□□ -0.67
SCN9A-203ENST00000409672 LTV1Q96GA3 475 aaPredicted RBP10.87□□□□□ -0.67
SCN9A-203ENST00000409672 RTF1Q92541 710 aaKnown RBP10.86□□□□□ -0.67
SCN9A-203ENST00000409672 RAD21O60216 631 aa10.86□□□□□ -0.67
SCN9A-203ENST00000409672 NUDCQ9Y266 331 aa10.85□□□□□ -0.67
SCN9A-203ENST00000409672 DRC7Q8IY82 874 aa10.84□□□□□ -0.67
SCN9A-203ENST00000409672 TAF7LQ5H9L4 462 aa10.84□□□□□ -0.67
SCN9A-203ENST00000409672 EIF4G1Q04637 1599 aaKnown RBP10.83□□□□□ -0.68
SCN9A-203ENST00000409672 FRAT2O75474 233 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-203ENST00000409672 ARID3AQ99856 593 aa10.83□□□□□ -0.68
SCN9A-203ENST00000409672 GOLGA6L4A6NEF3 574 aa10.82□□□□□ -0.68
SCN9A-203ENST00000409672 SAMD1Q6SPF0 538 aaPredicted RBP10.82□□□□□ -0.68
SCN9A-203ENST00000409672 GTF2E1P29083 439 aaPredicted RBP10.82□□□□□ -0.68
SCN9A-203ENST00000409672 FBXW7Q969H0 707 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms