RNA–Protein interactions for RNA: ENST00000398868.7

ATL3-201, Transcript of atlastin GTPase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ATL3, Length 7,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-201ENST00000398868 RGL3Q3MIN7 710 aa12.64□□□□□ -0.39
ATL3-201ENST00000398868 PPP1R15AO75807 674 aaPredicted RBP12.63□□□□□ -0.39
ATL3-201ENST00000398868 CHMP7Q8WUX9 453 aaPredicted RBP12.63□□□□□ -0.39
ATL3-201ENST00000398868 TMC1Q8TDI8 760 aa12.62□□□□□ -0.39
ATL3-201ENST00000398868 MLECQ14165 292 aa12.62□□□□□ -0.39
ATL3-201ENST00000398868 SOX12O15370 315 aa12.61□□□□□ -0.39
ATL3-201ENST00000398868 HNRNPUQ00839 825 aaKnown RBP eCLIP12.6□□□□□ -0.39
ATL3-201ENST00000398868 RRP7BPQ9NSQ0 103 aa12.58□□□□□ -0.4
ATL3-201ENST00000398868 NPHP1O15259 732 aa12.57□□□□□ -0.4
ATL3-201ENST00000398868 TNNT2P45379 298 aaPredicted RBP12.56□□□□□ -0.4
ATL3-201ENST00000398868 LAS1LQ9Y4W2 734 aaKnown RBP12.55□□□□□ -0.4
ATL3-201ENST00000398868 CSRNP3Q8WYN3 585 aa12.54□□□□□ -0.4
ATL3-201ENST00000398868 TONSLQ96HA7 1378 aa12.53□□□□□ -0.4
ATL3-201ENST00000398868 WDR43Q15061 677 aaKnown RBP eCLIP12.5□□□□□ -0.41
ATL3-201ENST00000398868 NEUROD2Q15784 382 aa12.5□□□□□ -0.41
ATL3-201ENST00000398868 CCDC136Q96JN2 1154 aa12.48□□□□□ -0.41
ATL3-201ENST00000398868 UPF2Q9HAU5 1272 aaKnown RBP12.48□□□□□ -0.41
ATL3-201ENST00000398868 NAP1L5Q96NT1 182 aaPredicted RBP12.48□□□□□ -0.41
ATL3-201ENST00000398868 SAFB2Q14151 953 aaKnown RBP eCLIP12.46□□□□□ -0.41
ATL3-201ENST00000398868 TSPY4P0CV99 314 aa12.46□□□□□ -0.42
ATL3-201ENST00000398868 TSPY10P0CW01 314 aa12.46□□□□□ -0.42
ATL3-201ENST00000398868 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.45□□□□□ -0.42
ATL3-201ENST00000398868 ANP32EQ9BTT0 268 aa12.45□□□□□ -0.42
ATL3-201ENST00000398868 TRIM44Q96DX7 344 aaPredicted RBP12.43□□□□□ -0.42
ATL3-201ENST00000398868 MRS2Q9HD23 443 aa12.39□□□□□ -0.43
ATL3-201ENST00000398868 NCLP19338 710 aaKnown RBP12.38□□□□□ -0.43
ATL3-201ENST00000398868 DNTTIP2Q5QJE6 756 aaKnown RBP12.38□□□□□ -0.43
ATL3-201ENST00000398868 ARID3AQ99856 593 aa12.37□□□□□ -0.43
ATL3-201ENST00000398868 MIER1Q8N108 512 aa12.36□□□□□ -0.43
ATL3-201ENST00000398868 MTUS2Q5JR59 1369 aa12.36□□□□□ -0.43
ATL3-201ENST00000398868 ZNF330Q9Y3S2 320 aaPredicted RBP12.35□□□□□ -0.43
ATL3-201ENST00000398868 CDK11BP21127 795 aaKnown RBP12.35□□□□□ -0.43
ATL3-201ENST00000398868 NAP1L2Q9ULW6 460 aaPredicted RBP12.34□□□□□ -0.43
ATL3-201ENST00000398868 ISY1Q9ULR0 285 aaKnown RBP12.33□□□□□ -0.44
ATL3-201ENST00000398868 MYH16Q9H6N6 1097 aa12.33□□□□□ -0.44
ATL3-201ENST00000398868 CC2D1BQ5T0F9 858 aaKnown RBP12.32□□□□□ -0.44
ATL3-201ENST00000398868 PTMAP06454 111 aaKnown RBP12.32□□□□□ -0.44
ATL3-201ENST00000398868 POGKQ9P215 609 aa12.32□□□□□ -0.44
ATL3-201ENST00000398868 STK26Q9P289 416 aa12.31□□□□□ -0.44
ATL3-201ENST00000398868 CCDC9Q9Y3X0 531 aaKnown RBP12.31□□□□□ -0.44
ATL3-201ENST00000398868 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.31□□□□□ -0.44
ATL3-201ENST00000398868 ANO8Q9HCE9 1232 aaPredicted RBP12.31□□□□□ -0.44
ATL3-201ENST00000398868 CLSTN1O94985 981 aa12.31□□□□□ -0.44
ATL3-201ENST00000398868 ERCC6Q03468 1493 aa12.3□□□□□ -0.44
ATL3-201ENST00000398868 PAK3O75914 559 aaPredicted RBP12.3□□□□□ -0.44
ATL3-201ENST00000398868 NUTM2DQ5VT03 806 aaPredicted RBP12.29□□□□□ -0.44
ATL3-201ENST00000398868 U2SURPO15042 1029 aaKnown RBP12.28□□□□□ -0.44
ATL3-201ENST00000398868 PLEKHD1A6NEE1 506 aa12.27□□□□□ -0.45
ATL3-201ENST00000398868 FRAT1Q92837 279 aaPredicted RBP12.26□□□□□ -0.45
ATL3-201ENST00000398868 PLCB2Q00722 1185 aa12.26□□□□□ -0.45
ATL3-201ENST00000398868 NUTM2FA1L443 756 aa12.26□□□□□ -0.45
ATL3-201ENST00000398868 DEKP35659 375 aaKnown RBP12.24□□□□□ -0.45
ATL3-201ENST00000398868 OS9Q13438 667 aaPredicted RBP12.23□□□□□ -0.45
ATL3-201ENST00000398868 APBB1O00213 710 aa12.23□□□□□ -0.45
ATL3-201ENST00000398868 GOLGA2Q08379 1002 aa12.23□□□□□ -0.45
ATL3-201ENST00000398868 GGT6Q6P531 493 aa12.22□□□□□ -0.45
ATL3-201ENST00000398868 SPRYD3Q8NCJ5 442 aa12.21□□□□□ -0.45
ATL3-201ENST00000398868 CFDP1Q9UEE9 299 aaPredicted RBP12.21□□□□□ -0.46
ATL3-201ENST00000398868 FTSJ3Q8IY81 847 aaKnown RBP12.21□□□□□ -0.46
ATL3-201ENST00000398868 ERICH6BQ5W0A0 696 aa12.2□□□□□ -0.46
ATL3-201ENST00000398868 DDRGK1Q96HY6 314 aa12.2□□□□□ -0.46
ATL3-201ENST00000398868 SUPT16HQ9Y5B9 1047 aaKnown RBP12.19□□□□□ -0.46
ATL3-201ENST00000398868 FOXD1Q16676 465 aa12.19□□□□□ -0.46
ATL3-201ENST00000398868 BECN1Q14457 450 aa12.18□□□□□ -0.46
ATL3-201ENST00000398868 SIN3AQ96ST3 1273 aa12.18□□□□□ -0.46
ATL3-201ENST00000398868 CARD11Q9BXL7 1154 aa12.18□□□□□ -0.46
ATL3-201ENST00000398868 RGS3P49796 1198 aa12.18□□□□□ -0.46
ATL3-201ENST00000398868 SRPK2P78362 688 aaKnown RBP12.18□□□□□ -0.46
ATL3-201ENST00000398868 EIF4G1Q04637 1599 aaKnown RBP12.18□□□□□ -0.46
ATL3-201ENST00000398868 KNSTRNQ9Y448 316 aa12.18□□□□□ -0.46
ATL3-201ENST00000398868 ZCCHC6Q5VYS8 1495 aaKnown RBP12.17□□□□□ -0.46
ATL3-201ENST00000398868 NOP58Q9Y2X3 529 aaKnown RBP12.16□□□□□ -0.46
ATL3-201ENST00000398868 EIF4G2P78344 907 aaKnown RBP eCLIP12.15□□□□□ -0.46
ATL3-201ENST00000398868 CSB-PGBD3P0DP91 1061 aa12.15□□□□□ -0.46
ATL3-201ENST00000398868 PDE4CQ08493 712 aa12.14□□□□□ -0.47
ATL3-201ENST00000398868 FGD1P98174 961 aa12.14□□□□□ -0.47
ATL3-201ENST00000398868 MAPK8IP3Q9UPT6 1336 aa12.14□□□□□ -0.47
ATL3-201ENST00000398868 GOLGA6L22H0YM25 854 aa12.13□□□□□ -0.47
ATL3-201ENST00000398868 KCNJ4P48050 445 aa12.12□□□□□ -0.47
ATL3-201ENST00000398868 CFAP53Q96M91 514 aa12.11□□□□□ -0.47
ATL3-201ENST00000398868 DCAF11Q8TEB1 546 aa12.11□□□□□ -0.47
ATL3-201ENST00000398868 LTV1Q96GA3 475 aaPredicted RBP12.11□□□□□ -0.47
ATL3-201ENST00000398868 KLHL34Q8N239 644 aa12.1□□□□□ -0.47
ATL3-201ENST00000398868 AEBP2Q6ZN18 517 aaPredicted RBP12.1□□□□□ -0.47
ATL3-201ENST00000398868 ZRSR1Q15695 479 aaKnown RBP12.09□□□□□ -0.47
ATL3-201ENST00000398868 B4GALNT3Q6L9W6 998 aa12.08□□□□□ -0.48
ATL3-201ENST00000398868 MSH5O43196 834 aa12.08□□□□□ -0.48
ATL3-201ENST00000398868 CHMP3Q9Y3E7 222 aa12.08□□□□□ -0.48
ATL3-201ENST00000398868 PHF23Q9BUL5 403 aaPredicted RBP12.07□□□□□ -0.48
ATL3-201ENST00000398868 CLIP1P30622 1438 aa12.05□□□□□ -0.48
ATL3-201ENST00000398868 GZF1Q9H116 711 aaPredicted RBP12.04□□□□□ -0.48
ATL3-201ENST00000398868 MSNP26038 577 aaKnown RBP12.03□□□□□ -0.48
ATL3-201ENST00000398868 CASC1Q6TDU7 716 aa12.02□□□□□ -0.49
ATL3-201ENST00000398868 HSP90AB1P08238 724 aaKnown RBP12.02□□□□□ -0.49
ATL3-201ENST00000398868 PRM3Q9NNZ6 103 aa12.01□□□□□ -0.49
ATL3-201ENST00000398868 G3V3G9 751 aa11.99□□□□□ -0.49
ATL3-201ENST00000398868 DCAF8Q5TAQ9 597 aa11.99□□□□□ -0.49
ATL3-201ENST00000398868 RBM19Q9Y4C8 960 aaKnown RBP11.99□□□□□ -0.49
ATL3-201ENST00000398868 NUDCQ9Y266 331 aa11.99□□□□□ -0.49
ATL3-201ENST00000398868 NGEFQ8N5V2 710 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms