RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 EIF5BO60841 1220 aaKnown RBP13.84□□□□□ -0.19
COL4A6-203ENST00000394872 HAP1P54257 671 aaPredicted RBP13.84□□□□□ -0.19
COL4A6-203ENST00000394872 PLEKHD1A6NEE1 506 aa13.83□□□□□ -0.2
COL4A6-203ENST00000394872 HIRIP3Q9BW71 556 aaPredicted RBP13.79□□□□□ -0.2
COL4A6-203ENST00000394872 RB1CC1Q8TDY2 1594 aa13.79□□□□□ -0.2
COL4A6-203ENST00000394872 CLIP1P30622 1438 aa13.78□□□□□ -0.2
COL4A6-203ENST00000394872 RGL3Q3MIN7 710 aa13.78□□□□□ -0.2
COL4A6-203ENST00000394872 RSF1Q96T23 1441 aaPredicted RBP13.78□□□□□ -0.2
COL4A6-203ENST00000394872 EIF4G2P78344 907 aaKnown RBP eCLIP13.77□□□□□ -0.21
COL4A6-203ENST00000394872 DCAF1Q9Y4B6 1507 aa13.75□□□□□ -0.21
COL4A6-203ENST00000394872 ARXQ96QS3 562 aa13.75□□□□□ -0.21
COL4A6-203ENST00000394872 CCDC180Q9P1Z9 1646 aa13.74□□□□□ -0.21
COL4A6-203ENST00000394872 GLIPR1L2Q4G1C9 344 aa13.73□□□□□ -0.21
COL4A6-203ENST00000394872 CDK11BP21127 795 aaKnown RBP13.73□□□□□ -0.21
COL4A6-203ENST00000394872 PPM1GO15355 546 aaPredicted RBP13.71□□□□□ -0.21
COL4A6-203ENST00000394872 IRX6P78412 446 aaPredicted RBP13.71□□□□□ -0.21
COL4A6-203ENST00000394872 NBR1Q14596 966 aa13.71□□□□□ -0.21
COL4A6-203ENST00000394872 CFAP53Q96M91 514 aa13.71□□□□□ -0.21
COL4A6-203ENST00000394872 CFDP1Q9UEE9 299 aaPredicted RBP13.7□□□□□ -0.22
COL4A6-203ENST00000394872 ERCC6Q03468 1493 aa13.7□□□□□ -0.22
COL4A6-203ENST00000394872 LMOD2Q6P5Q4 547 aa13.67□□□□□ -0.22
COL4A6-203ENST00000394872 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
COL4A6-203ENST00000394872 CDCA8Q53HL2 280 aa13.67□□□□□ -0.22
COL4A6-203ENST00000394872 KNSTRNQ9Y448 316 aa13.66□□□□□ -0.22
COL4A6-203ENST00000394872 BAZ1BQ9UIG0 1483 aaKnown RBP13.66□□□□□ -0.22
COL4A6-203ENST00000394872 POGKQ9P215 609 aa13.64□□□□□ -0.23
COL4A6-203ENST00000394872 LAS1LQ9Y4W2 734 aaKnown RBP13.63□□□□□ -0.23
COL4A6-203ENST00000394872 CARD11Q9BXL7 1154 aa13.62□□□□□ -0.23
COL4A6-203ENST00000394872 NCLP19338 710 aaKnown RBP13.62□□□□□ -0.23
COL4A6-203ENST00000394872 NPHP1O15259 732 aa13.61□□□□□ -0.23
COL4A6-203ENST00000394872 KIF27Q86VH2 1401 aa13.61□□□□□ -0.23
COL4A6-203ENST00000394872 MIER1Q8N108 512 aa13.61□□□□□ -0.23
COL4A6-203ENST00000394872 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
COL4A6-203ENST00000394872 TRHP20396 242 aaPredicted RBP13.6□□□□□ -0.23
COL4A6-203ENST00000394872 EEA1Q15075 1411 aa13.6□□□□□ -0.23
COL4A6-203ENST00000394872 BECN1Q14457 450 aa13.6□□□□□ -0.23
COL4A6-203ENST00000394872 MAPK8IP3Q9UPT6 1336 aa13.6□□□□□ -0.23
COL4A6-203ENST00000394872 WRNQ14191 1432 aaPredicted RBP eCLIP13.6□□□□□ -0.23
COL4A6-203ENST00000394872 CEP162Q5TB80 1403 aa13.6□□□□□ -0.23
COL4A6-203ENST00000394872 FTSJ3Q8IY81 847 aaKnown RBP13.6□□□□□ -0.23
COL4A6-203ENST00000394872 CASC1Q6TDU7 716 aa13.59□□□□□ -0.23
COL4A6-203ENST00000394872 NEUROD2Q15784 382 aa13.58□□□□□ -0.24
COL4A6-203ENST00000394872 DDRGK1Q96HY6 314 aa13.57□□□□□ -0.24
COL4A6-203ENST00000394872 NUDCQ9Y266 331 aa13.57□□□□□ -0.24
COL4A6-203ENST00000394872 TULP1O00294 542 aaPredicted RBP13.55□□□□□ -0.24
COL4A6-203ENST00000394872 TNNT2P45379 298 aaPredicted RBP13.55□□□□□ -0.24
COL4A6-203ENST00000394872 MLECQ14165 292 aa13.54□□□□□ -0.24
COL4A6-203ENST00000394872 GOLGA6L22H0YM25 854 aa13.53□□□□□ -0.24
COL4A6-203ENST00000394872 EIF4G1Q04637 1599 aaKnown RBP13.53□□□□□ -0.24
COL4A6-203ENST00000394872 ZRSR1Q15695 479 aaKnown RBP13.53□□□□□ -0.24
COL4A6-203ENST00000394872 NACADO15069 1562 aa13.53□□□□□ -0.24
COL4A6-203ENST00000394872 TPRNQ4KMQ1 711 aa13.52□□□□□ -0.25
COL4A6-203ENST00000394872 KANK1Q14678 1352 aa13.51□□□□□ -0.25
COL4A6-203ENST00000394872 CCNB3Q8WWL7 1395 aa13.51□□□□□ -0.25
COL4A6-203ENST00000394872 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
COL4A6-203ENST00000394872 U2SURPO15042 1029 aaKnown RBP13.5□□□□□ -0.25
COL4A6-203ENST00000394872 CC2D1BQ5T0F9 858 aaKnown RBP13.5□□□□□ -0.25
COL4A6-203ENST00000394872 OS9Q13438 667 aaPredicted RBP13.49□□□□□ -0.25
COL4A6-203ENST00000394872 TAOK2Q9UL54 1235 aa13.49□□□□□ -0.25
COL4A6-203ENST00000394872 TRIM44Q96DX7 344 aaPredicted RBP13.49□□□□□ -0.25
COL4A6-203ENST00000394872 HDGFP51858 240 aaKnown RBP13.49□□□□□ -0.25
COL4A6-203ENST00000394872 FRAT1Q92837 279 aaPredicted RBP13.47□□□□□ -0.25
COL4A6-203ENST00000394872 PNNQ9H307 717 aaKnown RBP13.47□□□□□ -0.25
COL4A6-203ENST00000394872 ANP32EQ9BTT0 268 aa13.47□□□□□ -0.25
COL4A6-203ENST00000394872 SOX12O15370 315 aa13.46□□□□□ -0.25
COL4A6-203ENST00000394872 GOLGA2Q08379 1002 aa13.46□□□□□ -0.26
COL4A6-203ENST00000394872 SRPK2P78362 688 aaKnown RBP13.44□□□□□ -0.26
COL4A6-203ENST00000394872 SIN3AQ96ST3 1273 aa13.44□□□□□ -0.26
COL4A6-203ENST00000394872 TNIKQ9UKE5 1360 aa13.44□□□□□ -0.26
COL4A6-203ENST00000394872 PTMAP06454 111 aaKnown RBP13.43□□□□□ -0.26
COL4A6-203ENST00000394872 TMF1P82094 1093 aa13.43□□□□□ -0.26
COL4A6-203ENST00000394872 DCAF11Q8TEB1 546 aa13.43□□□□□ -0.26
COL4A6-203ENST00000394872 CHMP4BQ9H444 224 aaKnown RBP13.43□□□□□ -0.26
COL4A6-203ENST00000394872 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
COL4A6-203ENST00000394872 FGD1P98174 961 aa13.42□□□□□ -0.26
COL4A6-203ENST00000394872 SAFB2Q14151 953 aaKnown RBP eCLIP13.42□□□□□ -0.26
COL4A6-203ENST00000394872 NAP1L2Q9ULW6 460 aaPredicted RBP13.41□□□□□ -0.26
COL4A6-203ENST00000394872 KCNJ4P48050 445 aa13.4□□□□□ -0.26
COL4A6-203ENST00000394872 FHAD1B1AJZ9 1412 aa13.4□□□□□ -0.26
COL4A6-203ENST00000394872 MS4A1P11836 297 aa13.4□□□□□ -0.26
COL4A6-203ENST00000394872 RGS3P49796 1198 aa13.4□□□□□ -0.27
COL4A6-203ENST00000394872 GGT6Q6P531 493 aa13.39□□□□□ -0.27
COL4A6-203ENST00000394872 CUX2O14529 1486 aa13.38□□□□□ -0.27
COL4A6-203ENST00000394872 CARMIL1Q5VZK9 1371 aa13.38□□□□□ -0.27
COL4A6-203ENST00000394872 MYO15BQ96JP2 1530 aa13.38□□□□□ -0.27
COL4A6-203ENST00000394872 STK26Q9P289 416 aa13.37□□□□□ -0.27
COL4A6-203ENST00000394872 MORC1Q86VD1 984 aa13.37□□□□□ -0.27
COL4A6-203ENST00000394872 BAZ1AQ9NRL2 1556 aaPredicted RBP13.36□□□□□ -0.27
COL4A6-203ENST00000394872 DNTTIP2Q5QJE6 756 aaKnown RBP13.36□□□□□ -0.27
COL4A6-203ENST00000394872 RTF1Q92541 710 aaKnown RBP13.35□□□□□ -0.27
COL4A6-203ENST00000394872 HSP90AB1P08238 724 aaKnown RBP13.35□□□□□ -0.27
COL4A6-203ENST00000394872 PAK3O75914 559 aaPredicted RBP13.34□□□□□ -0.27
COL4A6-203ENST00000394872 PLCB2Q00722 1185 aa13.33□□□□□ -0.28
COL4A6-203ENST00000394872 HDGFL2Q7Z4V5 671 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-203ENST00000394872 ISY1Q9ULR0 285 aaKnown RBP13.31□□□□□ -0.28
COL4A6-203ENST00000394872 CARMIL2Q6F5E8 1435 aa13.31□□□□□ -0.28
COL4A6-203ENST00000394872 CSB-PGBD3P0DP91 1061 aa13.31□□□□□ -0.28
COL4A6-203ENST00000394872 PPP4R2Q9NY27 417 aa13.31□□□□□ -0.28
COL4A6-203ENST00000394872 GOLGA6L6A8MZA4 724 aa13.29□□□□□ -0.28
COL4A6-203ENST00000394872 ARHGAP35Q9NRY4 1499 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms