RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZNF777Q9ULD5 760 aaPredicted RBP15.6■□□□□ 0.09
SYNPO-202ENST00000394243 MYH16Q9H6N6 1097 aa15.59■□□□□ 0.09
SYNPO-202ENST00000394243 TPRNQ4KMQ1 711 aa15.59■□□□□ 0.09
SYNPO-202ENST00000394243 ARID4BQ4LE39 1312 aaPredicted RBP15.58■□□□□ 0.08
SYNPO-202ENST00000394243 PPP4R2Q9NY27 417 aa15.56■□□□□ 0.08
SYNPO-202ENST00000394243 SENP3-EIF4A1A0A087X0R7 540 aa15.55■□□□□ 0.08
SYNPO-202ENST00000394243 RBM19Q9Y4C8 960 aaKnown RBP15.53■□□□□ 0.08
SYNPO-202ENST00000394243 PLCB2Q00722 1185 aa15.52■□□□□ 0.08
SYNPO-202ENST00000394243 ZRSR1Q15695 479 aaKnown RBP15.49■□□□□ 0.07
SYNPO-202ENST00000394243 B4GALNT3Q6L9W6 998 aa15.49■□□□□ 0.07
SYNPO-202ENST00000394243 MSNP26038 577 aaKnown RBP15.48■□□□□ 0.07
SYNPO-202ENST00000394243 L1TD1Q5T7N2 865 aaKnown RBP15.48■□□□□ 0.07
SYNPO-202ENST00000394243 CHGAP10645 457 aaKnown RBP15.47■□□□□ 0.07
SYNPO-202ENST00000394243 RGS3P49796 1198 aa15.46■□□□□ 0.07
SYNPO-202ENST00000394243 EIF4G2P78344 907 aaKnown RBP eCLIP15.46■□□□□ 0.07
SYNPO-202ENST00000394243 KDM2AQ9Y2K7 1162 aa15.46■□□□□ 0.06
SYNPO-202ENST00000394243 FBLN2P98095 1184 aa15.44■□□□□ 0.06
SYNPO-202ENST00000394243 CHIC2Q9UKJ5 165 aa15.44■□□□□ 0.06
SYNPO-202ENST00000394243 ARID3AQ99856 593 aa15.43■□□□□ 0.06
SYNPO-202ENST00000394243 CHAF1AQ13111 956 aaPredicted RBP15.42■□□□□ 0.06
SYNPO-202ENST00000394243 HSP90AB1P08238 724 aaKnown RBP15.41■□□□□ 0.06
SYNPO-202ENST00000394243 CASC1Q6TDU7 716 aa15.39■□□□□ 0.05
SYNPO-202ENST00000394243 PNNQ9H307 717 aaKnown RBP15.36■□□□□ 0.05
SYNPO-202ENST00000394243 CCDC180Q9P1Z9 1646 aa15.36■□□□□ 0.05
SYNPO-202ENST00000394243 GOLGA6L6A8MZA4 724 aa15.35■□□□□ 0.05
SYNPO-202ENST00000394243 ZBTB7CA1YPR0 619 aa15.35■□□□□ 0.05
SYNPO-202ENST00000394243 FTSJ3Q8IY81 847 aaKnown RBP15.35■□□□□ 0.05
SYNPO-202ENST00000394243 SPRYD3Q8NCJ5 442 aa15.34■□□□□ 0.05
SYNPO-202ENST00000394243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.33■□□□□ 0.04
SYNPO-202ENST00000394243 TSHZ2Q9NRE2 1034 aa15.32■□□□□ 0.04
SYNPO-202ENST00000394243 STAG3Q9UJ98 1225 aa15.32■□□□□ 0.04
SYNPO-202ENST00000394243 PABPN1Q86U42 306 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNPO-202ENST00000394243 HSCBQ8IWL3 235 aa15.3■□□□□ 0.04
SYNPO-202ENST00000394243 TNNT3P45378 269 aaPredicted RBP15.3■□□□□ 0.04
SYNPO-202ENST00000394243 NRDCO43847 1150 aa15.3■□□□□ 0.04
SYNPO-202ENST00000394243 GZF1Q9H116 711 aaPredicted RBP15.28■□□□□ 0.04
SYNPO-202ENST00000394243 DRC7Q8IY82 874 aa15.27■□□□□ 0.03
SYNPO-202ENST00000394243 FRAT1Q92837 279 aaPredicted RBP15.26■□□□□ 0.03
SYNPO-202ENST00000394243 HSP90AA2PQ14568 343 aaPredicted RBP15.25■□□□□ 0.03
SYNPO-202ENST00000394243 VSIG10Q8N0Z9 540 aa15.25■□□□□ 0.03
SYNPO-202ENST00000394243 MYO15BQ96JP2 1530 aa15.25■□□□□ 0.03
SYNPO-202ENST00000394243 TAOK2Q9UL54 1235 aa15.23■□□□□ 0.03
SYNPO-202ENST00000394243 NEUROD2Q15784 382 aa15.22■□□□□ 0.03
SYNPO-202ENST00000394243 TULP1O00294 542 aaPredicted RBP15.22■□□□□ 0.03
SYNPO-202ENST00000394243 PLPPR3Q6T4P5 718 aa15.21■□□□□ 0.03
SYNPO-202ENST00000394243 GOLGA6L4A6NEF3 574 aa15.21■□□□□ 0.02
SYNPO-202ENST00000394243 KIAA2012Q0VF49 1180 aa15.2■□□□□ 0.02
SYNPO-202ENST00000394243 RRP7BPQ9NSQ0 103 aa15.2■□□□□ 0.02
SYNPO-202ENST00000394243 RSPH6AQ9H0K4 717 aa15.18■□□□□ 0.02
SYNPO-202ENST00000394243 KNSTRNQ9Y448 316 aa15.18■□□□□ 0.02
SYNPO-202ENST00000394243 SLKQ9H2G2 1235 aaPredicted RBP15.18■□□□□ 0.02
SYNPO-202ENST00000394243 ESF1Q9H501 851 aaKnown RBP15.18■□□□□ 0.02
SYNPO-202ENST00000394243 GOLGA6L3A6NEY3 463 aa15.18■□□□□ 0.02
SYNPO-202ENST00000394243 CFAP53Q96M91 514 aa15.17■□□□□ 0.02
SYNPO-202ENST00000394243 IPO9Q96P70 1041 aaKnown RBP15.17■□□□□ 0.02
SYNPO-202ENST00000394243 GBP4Q96PP9 640 aa15.15■□□□□ 0.02
SYNPO-202ENST00000394243 FGD1P98174 961 aa15.14■□□□□ 0.01
SYNPO-202ENST00000394243 MTUS2Q5JR59 1369 aa15.14■□□□□ 0.01
SYNPO-202ENST00000394243 TSPY4P0CV99 314 aa15.13■□□□□ 0.01
SYNPO-202ENST00000394243 TSPY10P0CW01 314 aa15.13■□□□□ 0.01
SYNPO-202ENST00000394243 NAP1L2Q9ULW6 460 aaPredicted RBP15.12■□□□□ 0.01
SYNPO-202ENST00000394243 PTMSP20962 102 aa15.12■□□□□ 0.01
SYNPO-202ENST00000394243 KCNJ4P48050 445 aa15.12■□□□□ 0.01
SYNPO-202ENST00000394243 CLIP1P30622 1438 aa15.11■□□□□ 0.01
SYNPO-202ENST00000394243 SIN3AQ96ST3 1273 aa15.11■□□□□ 0.01
SYNPO-202ENST00000394243 RGL3Q3MIN7 710 aa15.1■□□□□ 0.01
SYNPO-202ENST00000394243 SENP3Q9H4L4 574 aaPredicted RBP15.1■□□□□ 0.01
SYNPO-202ENST00000394243 CCER2I3L3R5 266 aa15.09■□□□□ 0.01
SYNPO-202ENST00000394243 CARD11Q9BXL7 1154 aa15.09■□□□□ 0.01
SYNPO-202ENST00000394243 TCERG1O14776 1098 aaKnown RBP15.09■□□□□ 0.01
SYNPO-202ENST00000394243 MS4A1P11836 297 aa15.09■□□□□ 0.01
SYNPO-202ENST00000394243 CC2D1BQ5T0F9 858 aaKnown RBP15.09■□□□□ 0.01
SYNPO-202ENST00000394243 CHMP4BQ9H444 224 aaKnown RBP15.08■□□□□ 0.01
SYNPO-202ENST00000394243 TIMELESSQ9UNS1 1208 aa15.08■□□□□ 0
SYNPO-202ENST00000394243 MAPK8IP3Q9UPT6 1336 aa15.08■□□□□ 0
SYNPO-202ENST00000394243 MCCP23508 829 aa15.06■□□□□ 0
SYNPO-202ENST00000394243 A0A0G2JS52 829 aa15.05■□□□□ 0
SYNPO-202ENST00000394243 CDCA8Q53HL2 280 aa15.05■□□□□ 0
SYNPO-202ENST00000394243 PLEKHG5O94827 1062 aa15.05■□□□□ -0
SYNPO-202ENST00000394243 OS9Q13438 667 aaPredicted RBP15.04■□□□□ -0
SYNPO-202ENST00000394243 CEP162Q5TB80 1403 aa15.03■□□□□ -0
SYNPO-202ENST00000394243 SYAP1Q96A49 352 aaPredicted RBP15.01□□□□□ -0.01
SYNPO-202ENST00000394243 C14orf37Q86TY3 774 aa15.01□□□□□ -0.01
SYNPO-202ENST00000394243 USP35Q9P2H5 1018 aa15.01□□□□□ -0.01
SYNPO-202ENST00000394243 GOLGA6L1Q8N7Z2 621 aa15□□□□□ -0.01
SYNPO-202ENST00000394243 GSE1Q14687 1217 aa15□□□□□ -0.01
SYNPO-202ENST00000394243 NUDCQ9Y266 331 aa15□□□□□ -0.01
SYNPO-202ENST00000394243 CALD1Q05682 793 aaKnown RBP14.99□□□□□ -0.01
SYNPO-202ENST00000394243 RCAN3Q9UKA8 241 aa14.98□□□□□ -0.01
SYNPO-202ENST00000394243 ABCC9O60706 1549 aa14.98□□□□□ -0.01
SYNPO-202ENST00000394243 CFAP44Q96MT7 982 aa14.97□□□□□ -0.01
SYNPO-202ENST00000394243 NOC3LQ8WTT2 800 aaKnown RBP14.97□□□□□ -0.01
SYNPO-202ENST00000394243 U2SURPO15042 1029 aaKnown RBP14.96□□□□□ -0.01
SYNPO-202ENST00000394243 MFAP1P55081 439 aaKnown RBP14.95□□□□□ -0.02
SYNPO-202ENST00000394243 ZNF771Q7L3S4 317 aaPredicted RBP14.95□□□□□ -0.02
SYNPO-202ENST00000394243 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
SYNPO-202ENST00000394243 ZCCHC6Q5VYS8 1495 aaKnown RBP14.94□□□□□ -0.02
SYNPO-202ENST00000394243 APBB1O00213 710 aa14.93□□□□□ -0.02
SYNPO-202ENST00000394243 SETQ01105 290 aaPredicted RBP14.91□□□□□ -0.02
SYNPO-202ENST00000394243 GNL2Q13823 731 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms