RNA–Protein interactions for RNA: ENST00000389757.7

PKP4-201, Transcript of plakophilin 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PKP4, Length 5,777 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-201ENST00000389757 EIF4G1Q04637 1599 aaKnown RBP13.99□□□□□ -0.17
PKP4-201ENST00000389757 CCDC88BA6NC98 1476 aa13.99□□□□□ -0.17
PKP4-201ENST00000389757 TRHP20396 242 aaPredicted RBP13.96□□□□□ -0.17
PKP4-201ENST00000389757 SCAF1Q9H7N4 1312 aaKnown RBP13.95□□□□□ -0.18
PKP4-201ENST00000389757 DDX10Q13206 875 aaKnown RBP13.95□□□□□ -0.18
PKP4-201ENST00000389757 C14orf37Q86TY3 774 aa13.94□□□□□ -0.18
PKP4-201ENST00000389757 SENP3Q9H4L4 574 aaPredicted RBP13.94□□□□□ -0.18
PKP4-201ENST00000389757 FHAD1B1AJZ9 1412 aa13.94□□□□□ -0.18
PKP4-201ENST00000389757 SOGA1O94964 1423 aa13.94□□□□□ -0.18
PKP4-201ENST00000389757 CCNB3Q8WWL7 1395 aa13.92□□□□□ -0.18
PKP4-201ENST00000389757 RGL3Q3MIN7 710 aa13.92□□□□□ -0.18
PKP4-201ENST00000389757 CADPSQ9ULU8 1353 aa13.91□□□□□ -0.18
PKP4-201ENST00000389757 TDRD9Q8NDG6 1382 aaKnown RBP13.9□□□□□ -0.18
PKP4-201ENST00000389757 TMC1Q8TDI8 760 aa13.9□□□□□ -0.18
PKP4-201ENST00000389757 CARMIL2Q6F5E8 1435 aa13.9□□□□□ -0.18
PKP4-201ENST00000389757 FAM9BQ8IZU0 186 aa13.89□□□□□ -0.19
PKP4-201ENST00000389757 EIF4G2P78344 907 aaKnown RBP eCLIP13.88□□□□□ -0.19
PKP4-201ENST00000389757 RTL5Q5HYW3 569 aaPredicted RBP13.88□□□□□ -0.19
PKP4-201ENST00000389757 WDR43Q15061 677 aaKnown RBP eCLIP13.88□□□□□ -0.19
PKP4-201ENST00000389757 TOP2AP11388 1531 aaKnown RBP13.86□□□□□ -0.19
PKP4-201ENST00000389757 HNRNPUQ00839 825 aaKnown RBP eCLIP13.86□□□□□ -0.19
PKP4-201ENST00000389757 GTF3C3Q9Y5Q9 886 aa13.85□□□□□ -0.19
PKP4-201ENST00000389757 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
PKP4-201ENST00000389757 SALL2Q9Y467 1007 aaPredicted RBP13.84□□□□□ -0.19
PKP4-201ENST00000389757 ZBTB7CA1YPR0 619 aa13.83□□□□□ -0.2
PKP4-201ENST00000389757 PLEKHG5O94827 1062 aa13.83□□□□□ -0.2
PKP4-201ENST00000389757 ABCC8Q09428 1581 aa13.82□□□□□ -0.2
PKP4-201ENST00000389757 CDCA8Q53HL2 280 aa13.8□□□□□ -0.2
PKP4-201ENST00000389757 MRS2Q9HD23 443 aa13.8□□□□□ -0.2
PKP4-201ENST00000389757 A0A0G2JS52 829 aa13.8□□□□□ -0.2
PKP4-201ENST00000389757 HIRIP3Q9BW71 556 aaPredicted RBP13.8□□□□□ -0.2
PKP4-201ENST00000389757 KANK1Q14678 1352 aa13.8□□□□□ -0.2
PKP4-201ENST00000389757 WIZO95785 1651 aa13.8□□□□□ -0.2
PKP4-201ENST00000389757 HAP1P54257 671 aaPredicted RBP13.79□□□□□ -0.2
PKP4-201ENST00000389757 MLECQ14165 292 aa13.79□□□□□ -0.2
PKP4-201ENST00000389757 CARD11Q9BXL7 1154 aa13.76□□□□□ -0.21
PKP4-201ENST00000389757 POGKQ9P215 609 aa13.76□□□□□ -0.21
PKP4-201ENST00000389757 NPM2Q86SE8 214 aaKnown RBP13.76□□□□□ -0.21
PKP4-201ENST00000389757 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.75□□□□□ -0.21
PKP4-201ENST00000389757 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
PKP4-201ENST00000389757 MYT1Q01538 1121 aa13.74□□□□□ -0.21
PKP4-201ENST00000389757 HDGFP51858 240 aaKnown RBP13.74□□□□□ -0.21
PKP4-201ENST00000389757 FMN1Q68DA7 1419 aa13.73□□□□□ -0.21
PKP4-201ENST00000389757 EFCAB2Q5VUJ9 269 aa13.73□□□□□ -0.21
PKP4-201ENST00000389757 CFAP53Q96M91 514 aa13.71□□□□□ -0.21
PKP4-201ENST00000389757 KNSTRNQ9Y448 316 aa13.71□□□□□ -0.21
PKP4-201ENST00000389757 GGT6Q6P531 493 aa13.71□□□□□ -0.21
PKP4-201ENST00000389757 FANCD2Q9BXW9 1451 aa13.71□□□□□ -0.21
PKP4-201ENST00000389757 VPS8Q8N3P4 1428 aa13.7□□□□□ -0.22
PKP4-201ENST00000389757 ARHGAP35Q9NRY4 1499 aa13.7□□□□□ -0.22
PKP4-201ENST00000389757 JPH4Q96JJ6 628 aa13.68□□□□□ -0.22
PKP4-201ENST00000389757 RAPGEF2Q9Y4G8 1499 aa13.68□□□□□ -0.22
PKP4-201ENST00000389757 LMOD2Q6P5Q4 547 aa13.68□□□□□ -0.22
PKP4-201ENST00000389757 FKBP8Q14318 412 aa13.67□□□□□ -0.22
PKP4-201ENST00000389757 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
PKP4-201ENST00000389757 SIN3AQ96ST3 1273 aa13.66□□□□□ -0.22
PKP4-201ENST00000389757 ANP32AP39687 249 aaKnown RBP13.65□□□□□ -0.22
PKP4-201ENST00000389757 DCAF11Q8TEB1 546 aa13.64□□□□□ -0.23
PKP4-201ENST00000389757 UPF2Q9HAU5 1272 aaKnown RBP13.63□□□□□ -0.23
PKP4-201ENST00000389757 KANK4Q5T7N3 995 aaPredicted RBP13.62□□□□□ -0.23
PKP4-201ENST00000389757 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
PKP4-201ENST00000389757 MYH16Q9H6N6 1097 aa13.61□□□□□ -0.23
PKP4-201ENST00000389757 FHOD3Q2V2M9 1422 aa13.6□□□□□ -0.23
PKP4-201ENST00000389757 PKD2Q13563 968 aa13.6□□□□□ -0.23
PKP4-201ENST00000389757 CCDC136Q96JN2 1154 aa13.6□□□□□ -0.23
PKP4-201ENST00000389757 NUDCQ9Y266 331 aa13.59□□□□□ -0.23
PKP4-201ENST00000389757 ANKRD30AQ9BXX3 1397 aa13.59□□□□□ -0.23
PKP4-201ENST00000389757 HSP90AA1P07900 732 aaKnown RBP13.59□□□□□ -0.23
PKP4-201ENST00000389757 SETD5Q9C0A6 1442 aa13.58□□□□□ -0.24
PKP4-201ENST00000389757 TMF1P82094 1093 aa13.58□□□□□ -0.24
PKP4-201ENST00000389757 MIER1Q8N108 512 aa13.58□□□□□ -0.24
PKP4-201ENST00000389757 MAPK8IP3Q9UPT6 1336 aa13.56□□□□□ -0.24
PKP4-201ENST00000389757 RSPH4AQ5TD94 716 aa13.56□□□□□ -0.24
PKP4-201ENST00000389757 KIF3BO15066 747 aa13.56□□□□□ -0.24
PKP4-201ENST00000389757 SPAG9O60271 1321 aaKnown RBP13.56□□□□□ -0.24
PKP4-201ENST00000389757 SRPK2P78362 688 aaKnown RBP13.56□□□□□ -0.24
PKP4-201ENST00000389757 CYB5RLQ6IPT4 315 aa13.55□□□□□ -0.24
PKP4-201ENST00000389757 CCDC18Q5T9S5 1454 aa13.55□□□□□ -0.24
PKP4-201ENST00000389757 NUP155O75694 1391 aa13.55□□□□□ -0.24
PKP4-201ENST00000389757 PTPRGP23470 1445 aa13.55□□□□□ -0.24
PKP4-201ENST00000389757 HNRNPMP52272 730 aaKnown RBP eCLIP13.55□□□□□ -0.243e-6■■■□□ 19.2
PKP4-201ENST00000389757 TIMELESSQ9UNS1 1208 aa13.55□□□□□ -0.24
PKP4-201ENST00000389757 NCAPD3P42695 1498 aa13.55□□□□□ -0.24
PKP4-201ENST00000389757 ARXQ96QS3 562 aa13.53□□□□□ -0.24
PKP4-201ENST00000389757 TNNT2P45379 298 aaPredicted RBP13.53□□□□□ -0.24
PKP4-201ENST00000389757 SAFB2Q14151 953 aaKnown RBP eCLIP13.53□□□□□ -0.24
PKP4-201ENST00000389757 STK26Q9P289 416 aa13.52□□□□□ -0.25
PKP4-201ENST00000389757 GAPVD1Q14C86 1478 aa13.5□□□□□ -0.25
PKP4-201ENST00000389757 NEUROD2Q15784 382 aa13.5□□□□□ -0.25
PKP4-201ENST00000389757 FGD5Q6ZNL6 1462 aa13.5□□□□□ -0.25
PKP4-201ENST00000389757 CC2D1BQ5T0F9 858 aaKnown RBP13.5□□□□□ -0.25
PKP4-201ENST00000389757 FOXD1Q16676 465 aa13.49□□□□□ -0.25
PKP4-201ENST00000389757 WASHC2CQ9Y4E1 1318 aa13.49□□□□□ -0.25
PKP4-201ENST00000389757 MPHOSPH9Q99550 1183 aa13.49□□□□□ -0.25
PKP4-201ENST00000389757 U2SURPO15042 1029 aaKnown RBP13.49□□□□□ -0.25
PKP4-201ENST00000389757 LAS1LQ9Y4W2 734 aaKnown RBP13.48□□□□□ -0.25
PKP4-201ENST00000389757 PNNQ9H307 717 aaKnown RBP13.47□□□□□ -0.25
PKP4-201ENST00000389757 SOX12O15370 315 aa13.47□□□□□ -0.25
PKP4-201ENST00000389757 EID1Q9Y6B2 187 aa13.47□□□□□ -0.25
PKP4-201ENST00000389757 RAD54L2Q9Y4B4 1467 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms