RNA–Protein interactions for RNA: ENST00000379237.6

USP6NL-202, Transcript of USP6 N-terminal like, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP6NL, Length 4,546 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-202ENST00000379237 NAP1L5Q96NT1 182 aaPredicted RBP14.74□□□□□ -0.05
USP6NL-202ENST00000379237 RSPH6AQ9H0K4 717 aa14.74□□□□□ -0.05
USP6NL-202ENST00000379237 MRS2Q9HD23 443 aa14.73□□□□□ -0.05
USP6NL-202ENST00000379237 RB1CC1Q8TDY2 1594 aa14.73□□□□□ -0.05
USP6NL-202ENST00000379237 DHX57Q6P158 1386 aaKnown RBP14.73□□□□□ -0.05
USP6NL-202ENST00000379237 SIN3AQ96ST3 1273 aa14.72□□□□□ -0.05
USP6NL-202ENST00000379237 CLIP1P30622 1438 aa14.71□□□□□ -0.05
USP6NL-202ENST00000379237 PODXL2Q9NZ53 605 aa14.7□□□□□ -0.06
USP6NL-202ENST00000379237 USP35Q9P2H5 1018 aa14.69□□□□□ -0.06
USP6NL-202ENST00000379237 SENP3-EIF4A1A0A087X0R7 540 aa14.68□□□□□ -0.06
USP6NL-202ENST00000379237 GSE1Q14687 1217 aa14.66□□□□□ -0.06
USP6NL-202ENST00000379237 TONSLQ96HA7 1378 aa14.66□□□□□ -0.06
USP6NL-202ENST00000379237 DDRGK1Q96HY6 314 aa14.65□□□□□ -0.06
USP6NL-202ENST00000379237 GOLGA3Q08378 1498 aa14.62□□□□□ -0.07
USP6NL-202ENST00000379237 HSP90AA2PQ14568 343 aaPredicted RBP14.61□□□□□ -0.07
USP6NL-202ENST00000379237 SOGA1O94964 1423 aa14.6□□□□□ -0.07
USP6NL-202ENST00000379237 HSP90AA1P07900 732 aaKnown RBP14.6□□□□□ -0.07
USP6NL-202ENST00000379237 ARID4BQ4LE39 1312 aaPredicted RBP14.6□□□□□ -0.07
USP6NL-202ENST00000379237 PPP1R15AO75807 674 aaPredicted RBP14.54□□□□□ -0.08
USP6NL-202ENST00000379237 BAZ1BQ9UIG0 1483 aaKnown RBP14.54□□□□□ -0.08
USP6NL-202ENST00000379237 A0A0U1RQG5 324 aaPredicted RBP14.54□□□□□ -0.08
USP6NL-202ENST00000379237 PNNQ9H307 717 aaKnown RBP14.54□□□□□ -0.08
USP6NL-202ENST00000379237 ZMYND15Q9H091 742 aa14.53□□□□□ -0.08
USP6NL-202ENST00000379237 ABCC9O60706 1549 aa14.53□□□□□ -0.08
USP6NL-202ENST00000379237 EEA1Q15075 1411 aa14.52□□□□□ -0.09
USP6NL-202ENST00000379237 FRAT1Q92837 279 aaPredicted RBP14.52□□□□□ -0.09
USP6NL-202ENST00000379237 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
USP6NL-202ENST00000379237 VPS8Q8N3P4 1428 aa14.5□□□□□ -0.09
USP6NL-202ENST00000379237 SLC4A3P48751 1232 aa14.5□□□□□ -0.09
USP6NL-202ENST00000379237 CCDC88BA6NC98 1476 aa14.5□□□□□ -0.09
USP6NL-202ENST00000379237 SCRIBQ14160 1630 aa14.5□□□□□ -0.09
USP6NL-202ENST00000379237 TCERG1O14776 1098 aaKnown RBP14.48□□□□□ -0.09
USP6NL-202ENST00000379237 PLEKHG5O94827 1062 aa14.47□□□□□ -0.09
USP6NL-202ENST00000379237 PDE4AP27815 886 aa14.47□□□□□ -0.09
USP6NL-202ENST00000379237 NFKBIBQ15653 356 aa14.47□□□□□ -0.09
USP6NL-202ENST00000379237 KANK4Q5T7N3 995 aaPredicted RBP14.47□□□□□ -0.09
USP6NL-202ENST00000379237 FAM43AQ8N2R8 423 aa14.45□□□□□ -0.1
USP6NL-202ENST00000379237 RAB3GAP2Q9H2M9 1393 aa14.45□□□□□ -0.1
USP6NL-202ENST00000379237 CCNB3Q8WWL7 1395 aa14.44□□□□□ -0.1
USP6NL-202ENST00000379237 ABCC8Q09428 1581 aa14.44□□□□□ -0.1
USP6NL-202ENST00000379237 EIF4G2P78344 907 aaKnown RBP eCLIP14.43□□□□□ -0.1
USP6NL-202ENST00000379237 TMC1Q8TDI8 760 aa14.43□□□□□ -0.1
USP6NL-202ENST00000379237 L1TD1Q5T7N2 865 aaKnown RBP14.42□□□□□ -0.1
USP6NL-202ENST00000379237 TRIM44Q96DX7 344 aaPredicted RBP14.42□□□□□ -0.1
USP6NL-202ENST00000379237 C11orf95C9JLR9 678 aaPredicted RBP14.41□□□□□ -0.1
USP6NL-202ENST00000379237 SLC24A1O60721 1099 aa14.4□□□□□ -0.1
USP6NL-202ENST00000379237 CEP164Q9UPV0 1460 aa14.4□□□□□ -0.1
USP6NL-202ENST00000379237 WASHC2AQ641Q2 1341 aa14.39□□□□□ -0.11
USP6NL-202ENST00000379237 ZNF326Q5BKZ1 582 aaKnown RBP14.38□□□□□ -0.11
USP6NL-202ENST00000379237 NUDCQ9Y266 331 aa14.38□□□□□ -0.11
USP6NL-202ENST00000379237 ZBED9Q6R2W3 1325 aa14.37□□□□□ -0.11
USP6NL-202ENST00000379237 RUSC2Q8N2Y8 1516 aa14.35□□□□□ -0.11
USP6NL-202ENST00000379237 HSPA5P11021 654 aaKnown RBP14.33□□□□□ -0.12
USP6NL-202ENST00000379237 RGS3P49796 1198 aa14.33□□□□□ -0.12
USP6NL-202ENST00000379237 ANP32BQ92688 251 aaKnown RBP14.33□□□□□ -0.12
USP6NL-202ENST00000379237 GZF1Q9H116 711 aaPredicted RBP14.33□□□□□ -0.12
USP6NL-202ENST00000379237 SETD5Q9C0A6 1442 aa14.33□□□□□ -0.12
USP6NL-202ENST00000379237 WASHC2CQ9Y4E1 1318 aa14.33□□□□□ -0.12
USP6NL-202ENST00000379237 BECN1Q14457 450 aa14.33□□□□□ -0.12
USP6NL-202ENST00000379237 ARID3AQ99856 593 aa14.33□□□□□ -0.12
USP6NL-202ENST00000379237 FRAT2O75474 233 aaPredicted RBP14.32□□□□□ -0.12
USP6NL-202ENST00000379237 SLKQ9H2G2 1235 aaPredicted RBP14.31□□□□□ -0.12
USP6NL-202ENST00000379237 RRP9O43818 475 aaKnown RBP14.31□□□□□ -0.12
USP6NL-202ENST00000379237 EXOC6Q8TAG9 804 aa14.3□□□□□ -0.12
USP6NL-202ENST00000379237 CECR2Q9BXF3 1484 aa14.29□□□□□ -0.12
USP6NL-202ENST00000379237 UPF2Q9HAU5 1272 aaKnown RBP14.29□□□□□ -0.12
USP6NL-202ENST00000379237 CCDC184Q52MB2 194 aa14.28□□□□□ -0.12
USP6NL-202ENST00000379237 P3H3Q8IVL6 736 aa14.28□□□□□ -0.12
USP6NL-202ENST00000379237 GOLGA6L3A6NEY3 463 aa14.27□□□□□ -0.12
USP6NL-202ENST00000379237 AKNAQ7Z591 1439 aa14.27□□□□□ -0.12
USP6NL-202ENST00000379237 PRKRIP1Q9H875 184 aaPredicted RBP14.27□□□□□ -0.12
USP6NL-202ENST00000379237 BACH2Q9BYV9 841 aa14.26□□□□□ -0.13
USP6NL-202ENST00000379237 MS4A1P11836 297 aa14.26□□□□□ -0.13
USP6NL-202ENST00000379237 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
USP6NL-202ENST00000379237 TNNT2P45379 298 aaPredicted RBP14.24□□□□□ -0.13
USP6NL-202ENST00000379237 RCAN3Q9UKA8 241 aa14.24□□□□□ -0.13
USP6NL-202ENST00000379237 SPRYD3Q8NCJ5 442 aa14.21□□□□□ -0.13
USP6NL-202ENST00000379237 NACADO15069 1562 aa14.2□□□□□ -0.14
USP6NL-202ENST00000379237 MROH2BQ7Z745 1585 aa14.2□□□□□ -0.14
USP6NL-202ENST00000379237 MYH16Q9H6N6 1097 aa14.2□□□□□ -0.14
USP6NL-202ENST00000379237 CANXP27824 592 aaKnown RBP14.19□□□□□ -0.14
USP6NL-202ENST00000379237 RRP1P56182 461 aaKnown RBP14.19□□□□□ -0.14
USP6NL-202ENST00000379237 AMER1Q5JTC6 1135 aaPredicted RBP14.19□□□□□ -0.14
USP6NL-202ENST00000379237 POGKQ9P215 609 aa14.16□□□□□ -0.14
USP6NL-202ENST00000379237 CHIC2Q9UKJ5 165 aa14.16□□□□□ -0.14
USP6NL-202ENST00000379237 PLIN1O60240 522 aa14.15□□□□□ -0.14
USP6NL-202ENST00000379237 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.14□□□□□ -0.15
USP6NL-202ENST00000379237 MSNP26038 577 aaKnown RBP14.14□□□□□ -0.15
USP6NL-202ENST00000379237 RBM10P98175 930 aaKnown RBP14.13□□□□□ -0.15
USP6NL-202ENST00000379237 FAM161AQ3B820 660 aa14.13□□□□□ -0.15
USP6NL-202ENST00000379237 DCAF11Q8TEB1 546 aa14.13□□□□□ -0.15
USP6NL-202ENST00000379237 RRAGDQ9NQL2 400 aaPredicted RBP14.13□□□□□ -0.15
USP6NL-202ENST00000379237 FAM13BQ9NYF5 915 aa14.13□□□□□ -0.15
USP6NL-202ENST00000379237 SKAP1Q86WV1 359 aa14.13□□□□□ -0.15
USP6NL-202ENST00000379237 RAPGEF2Q9Y4G8 1499 aa14.12□□□□□ -0.15
USP6NL-202ENST00000379237 NCLP19338 710 aaKnown RBP14.11□□□□□ -0.15
USP6NL-202ENST00000379237 WIZO95785 1651 aa14.11□□□□□ -0.15
USP6NL-202ENST00000379237 PDE4CQ08493 712 aa14.1□□□□□ -0.15
USP6NL-202ENST00000379237 RRP7BPQ9NSQ0 103 aa14.1□□□□□ -0.15
USP6NL-202ENST00000379237 CDK11BP21127 795 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms