RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SLC24A1O60721 1099 aa20.39■□□□□ 0.86
NPHP4-201ENST00000378156 ANP32AP39687 249 aaKnown RBP20.38■□□□□ 0.85
NPHP4-201ENST00000378156 WIZO95785 1651 aa20.38■□□□□ 0.85
NPHP4-201ENST00000378156 KCNH8Q96L42 1107 aa20.37■□□□□ 0.85
NPHP4-201ENST00000378156 KDM2AQ9Y2K7 1162 aa20.37■□□□□ 0.85
NPHP4-201ENST00000378156 SIN3AQ96ST3 1273 aa20.33■□□□□ 0.85
NPHP4-201ENST00000378156 PLPPR3Q6T4P5 718 aa20.31■□□□□ 0.84
NPHP4-201ENST00000378156 MRS2Q9HD23 443 aa20.3■□□□□ 0.84
NPHP4-201ENST00000378156 VPS8Q8N3P4 1428 aa20.3■□□□□ 0.84
NPHP4-201ENST00000378156 CFDP1Q9UEE9 299 aaPredicted RBP20.29■□□□□ 0.84
NPHP4-201ENST00000378156 IRX6P78412 446 aaPredicted RBP20.28■□□□□ 0.84
NPHP4-201ENST00000378156 CCNB3Q8WWL7 1395 aa20.27■□□□□ 0.84
NPHP4-201ENST00000378156 TMC1Q8TDI8 760 aa20.27■□□□□ 0.84
NPHP4-201ENST00000378156 SALL2Q9Y467 1007 aaPredicted RBP20.27■□□□□ 0.83
NPHP4-201ENST00000378156 EIF4G2P78344 907 aaKnown RBP eCLIP20.26■□□□□ 0.832e-7■■■■■ 44.3
NPHP4-201ENST00000378156 KANK4Q5T7N3 995 aaPredicted RBP20.26■□□□□ 0.83
NPHP4-201ENST00000378156 BCL11AQ9H165 835 aa20.26■□□□□ 0.83
NPHP4-201ENST00000378156 ERCC6Q03468 1493 aa20.25■□□□□ 0.83
NPHP4-201ENST00000378156 CARMIL1Q5VZK9 1371 aa20.24■□□□□ 0.83
NPHP4-201ENST00000378156 TOP2AP11388 1531 aaKnown RBP20.22■□□□□ 0.83
NPHP4-201ENST00000378156 CUX2O14529 1486 aa20.22■□□□□ 0.83
NPHP4-201ENST00000378156 NPM2Q86SE8 214 aaKnown RBP20.21■□□□□ 0.83
NPHP4-201ENST00000378156 GLIPR1L2Q4G1C9 344 aa20.15■□□□□ 0.82
NPHP4-201ENST00000378156 EIF5BO60841 1220 aaKnown RBP20.15■□□□□ 0.82
NPHP4-201ENST00000378156 FHAD1B1AJZ9 1412 aa20.14■□□□□ 0.82
NPHP4-201ENST00000378156 SMARCA2P51531 1590 aa20.14■□□□□ 0.82
NPHP4-201ENST00000378156 RGL3Q3MIN7 710 aa20.14■□□□□ 0.81
NPHP4-201ENST00000378156 CCDC136Q96JN2 1154 aa20.13■□□□□ 0.81
NPHP4-201ENST00000378156 RUSC2Q8N2Y8 1516 aa20.12■□□□□ 0.81
NPHP4-201ENST00000378156 WDR43Q15061 677 aaKnown RBP eCLIP20.11■□□□□ 0.81
NPHP4-201ENST00000378156 ANP32BQ92688 251 aaKnown RBP20.07■□□□□ 0.8
NPHP4-201ENST00000378156 SENP3-EIF4A1A0A087X0R7 540 aa20.06■□□□□ 0.8
NPHP4-201ENST00000378156 SUPT16HQ9Y5B9 1047 aaKnown RBP20.06■□□□□ 0.8
NPHP4-201ENST00000378156 RAPGEF2Q9Y4G8 1499 aa20.04■□□□□ 0.8
NPHP4-201ENST00000378156 PDS5BQ9NTI5 1447 aa20.03■□□□□ 0.8
NPHP4-201ENST00000378156 SETD5Q9C0A6 1442 aa20.03■□□□□ 0.8
NPHP4-201ENST00000378156 PPP1R15AO75807 674 aaPredicted RBP20.01■□□□□ 0.79
NPHP4-201ENST00000378156 SENP3Q9H4L4 574 aaPredicted RBP20■□□□□ 0.79
NPHP4-201ENST00000378156 EIF4G1Q04637 1599 aaKnown RBP20■□□□□ 0.79
NPHP4-201ENST00000378156 SMARCA4P51532 1647 aa20■□□□□ 0.79
NPHP4-201ENST00000378156 RAB3GAP2Q9H2M9 1393 aa19.99■□□□□ 0.79
NPHP4-201ENST00000378156 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.99■□□□□ 0.79
NPHP4-201ENST00000378156 TDRD9Q8NDG6 1382 aaKnown RBP19.98■□□□□ 0.79
NPHP4-201ENST00000378156 CARD11Q9BXL7 1154 aa19.97■□□□□ 0.79
NPHP4-201ENST00000378156 TIMELESSQ9UNS1 1208 aa19.96■□□□□ 0.79
NPHP4-201ENST00000378156 ATAD2BQ9ULI0 1458 aa19.94■□□□□ 0.78
NPHP4-201ENST00000378156 CADPSQ9ULU8 1353 aa19.94■□□□□ 0.78
NPHP4-201ENST00000378156 CDCA8Q53HL2 280 aa19.93■□□□□ 0.78
NPHP4-201ENST00000378156 NBR1Q14596 966 aa19.92■□□□□ 0.78
NPHP4-201ENST00000378156 UPF2Q9HAU5 1272 aaKnown RBP19.92■□□□□ 0.78
NPHP4-201ENST00000378156 ARHGAP35Q9NRY4 1499 aa19.91■□□□□ 0.78
NPHP4-201ENST00000378156 ARID4BQ4LE39 1312 aaPredicted RBP19.9■□□□□ 0.78
NPHP4-201ENST00000378156 KNSTRNQ9Y448 316 aa19.87■□□□□ 0.77
NPHP4-201ENST00000378156 CARMIL2Q6F5E8 1435 aa19.84■□□□□ 0.77
NPHP4-201ENST00000378156 HSP90AA1P07900 732 aaKnown RBP19.84■□□□□ 0.77
NPHP4-201ENST00000378156 FOXD1Q16676 465 aa19.84■□□□□ 0.77
NPHP4-201ENST00000378156 DHX57Q6P158 1386 aaKnown RBP19.84■□□□□ 0.77
NPHP4-201ENST00000378156 CCER2I3L3R5 266 aa19.83■□□□□ 0.77
NPHP4-201ENST00000378156 HSPA5P11021 654 aaKnown RBP19.83■□□□□ 0.76
NPHP4-201ENST00000378156 FMN1Q68DA7 1419 aa19.81■□□□□ 0.76
NPHP4-201ENST00000378156 FHOD3Q2V2M9 1422 aa19.79■□□□□ 0.76
NPHP4-201ENST00000378156 ANP32EQ9BTT0 268 aa19.79■□□□□ 0.76
NPHP4-201ENST00000378156 CFAP53Q96M91 514 aa19.79■□□□□ 0.76
NPHP4-201ENST00000378156 DCAF11Q8TEB1 546 aa19.78■□□□□ 0.76
NPHP4-201ENST00000378156 C14orf37Q86TY3 774 aa19.78■□□□□ 0.76
NPHP4-201ENST00000378156 PPP4R2Q9NY27 417 aa19.77■□□□□ 0.76
NPHP4-201ENST00000378156 B4GALNT3Q6L9W6 998 aa19.74■□□□□ 0.75
NPHP4-201ENST00000378156 POGKQ9P215 609 aa19.73■□□□□ 0.75
NPHP4-201ENST00000378156 PLEKHG5O94827 1062 aa19.73■□□□□ 0.75
NPHP4-201ENST00000378156 KANK1Q14678 1352 aa19.72■□□□□ 0.75
NPHP4-201ENST00000378156 MPHOSPH9Q99550 1183 aa19.72■□□□□ 0.75
NPHP4-201ENST00000378156 PKD2Q13563 968 aa19.71■□□□□ 0.75
NPHP4-201ENST00000378156 ZBTB7CA1YPR0 619 aa19.71■□□□□ 0.75
NPHP4-201ENST00000378156 PPM1GO15355 546 aaPredicted RBP19.7■□□□□ 0.74
NPHP4-201ENST00000378156 EFCAB2Q5VUJ9 269 aa19.68■□□□□ 0.74
NPHP4-201ENST00000378156 TMF1P82094 1093 aa19.66■□□□□ 0.74
NPHP4-201ENST00000378156 MYH16Q9H6N6 1097 aa19.66■□□□□ 0.74
NPHP4-201ENST00000378156 CC2D1BQ5T0F9 858 aaKnown RBP19.66■□□□□ 0.74
NPHP4-201ENST00000378156 GGT6Q6P531 493 aa19.65■□□□□ 0.74
NPHP4-201ENST00000378156 JPH4Q96JJ6 628 aa19.64■□□□□ 0.73
NPHP4-201ENST00000378156 L3MBTL2Q969R5 705 aa19.63■□□□□ 0.73
NPHP4-201ENST00000378156 NUDCQ9Y266 331 aa19.63■□□□□ 0.73
NPHP4-201ENST00000378156 NEUROD2Q15784 382 aa19.62■□□□□ 0.73
NPHP4-201ENST00000378156 RBM19Q9Y4C8 960 aaKnown RBP19.62■□□□□ 0.73
NPHP4-201ENST00000378156 MLECQ14165 292 aa19.62■□□□□ 0.73
NPHP4-201ENST00000378156 FANCD2Q9BXW9 1451 aa19.61■□□□□ 0.73
NPHP4-201ENST00000378156 NUP155O75694 1391 aa19.6■□□□□ 0.73
NPHP4-201ENST00000378156 ANKRD30AQ9BXX3 1397 aa19.6■□□□□ 0.73
NPHP4-201ENST00000378156 TNNT2P45379 298 aaPredicted RBP19.6■□□□□ 0.73
NPHP4-201ENST00000378156 DDRGK1Q96HY6 314 aa19.6■□□□□ 0.73
NPHP4-201ENST00000378156 KIF21BO75037 1637 aa19.59■□□□□ 0.73
NPHP4-201ENST00000378156 IGF1RP08069 1367 aa19.59■□□□□ 0.73
NPHP4-201ENST00000378156 TSHZ2Q9NRE2 1034 aa19.58■□□□□ 0.73
NPHP4-201ENST00000378156 A0A0G2JS52 829 aa19.58■□□□□ 0.72
NPHP4-201ENST00000378156 MAPK8IP3Q9UPT6 1336 aa19.58■□□□□ 0.72
NPHP4-201ENST00000378156 TRHP20396 242 aaPredicted RBP19.56■□□□□ 0.72
NPHP4-201ENST00000378156 HDGFP51858 240 aaKnown RBP19.56■□□□□ 0.72
NPHP4-201ENST00000378156 HAP1P54257 671 aaPredicted RBP19.53■□□□□ 0.72
NPHP4-201ENST00000378156 HNRNPMP52272 730 aaKnown RBP eCLIP19.53■□□□□ 0.729e-7■■■■■ 28.6
NPHP4-201ENST00000378156 RSPH4AQ5TD94 716 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms