RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 PPM1GO15355 546 aaPredicted RBP15.87■□□□□ 0.13
PTPN1-201ENST00000371621 A0A0U1RQG5 324 aaPredicted RBP15.84■□□□□ 0.13
PTPN1-201ENST00000371621 NACADO15069 1562 aa15.84■□□□□ 0.13
PTPN1-201ENST00000371621 ZNF326Q5BKZ1 582 aaKnown RBP15.84■□□□□ 0.13
PTPN1-201ENST00000371621 IPO9Q96P70 1041 aaKnown RBP15.83■□□□□ 0.13
PTPN1-201ENST00000371621 BRPF3Q9ULD4 1205 aa15.82■□□□□ 0.12
PTPN1-201ENST00000371621 SIN3AQ96ST3 1273 aa15.8■□□□□ 0.12
PTPN1-201ENST00000371621 AMER1Q5JTC6 1135 aaPredicted RBP15.8■□□□□ 0.12
PTPN1-201ENST00000371621 PODXL2Q9NZ53 605 aa15.8■□□□□ 0.12
PTPN1-201ENST00000371621 ARID3AQ99856 593 aa15.79■□□□□ 0.12
PTPN1-201ENST00000371621 CEP162Q5TB80 1403 aa15.78■□□□□ 0.12
PTPN1-201ENST00000371621 UBE2Q2Q8WVN8 375 aa15.78■□□□□ 0.12
PTPN1-201ENST00000371621 HSP90AA2PQ14568 343 aaPredicted RBP15.73■□□□□ 0.11
PTPN1-201ENST00000371621 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
PTPN1-201ENST00000371621 HSP90AA1P07900 732 aaKnown RBP15.72■□□□□ 0.11
PTPN1-201ENST00000371621 SLC4A3P48751 1232 aa15.72■□□□□ 0.11
PTPN1-201ENST00000371621 MROH2BQ7Z745 1585 aa15.71■□□□□ 0.11
PTPN1-201ENST00000371621 TONSLQ96HA7 1378 aa15.71■□□□□ 0.11
PTPN1-201ENST00000371621 RSPH6AQ9H0K4 717 aa15.69■□□□□ 0.1
PTPN1-201ENST00000371621 PNNQ9H307 717 aaKnown RBP15.68■□□□□ 0.1
PTPN1-201ENST00000371621 DDRGK1Q96HY6 314 aa15.68■□□□□ 0.1
PTPN1-201ENST00000371621 TRIM44Q96DX7 344 aaPredicted RBP15.67■□□□□ 0.1
PTPN1-201ENST00000371621 GSE1Q14687 1217 aa15.66■□□□□ 0.1
PTPN1-201ENST00000371621 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
PTPN1-201ENST00000371621 TMC1Q8TDI8 760 aa15.64■□□□□ 0.09
PTPN1-201ENST00000371621 ANP32BQ92688 251 aaKnown RBP15.63■□□□□ 0.09
PTPN1-201ENST00000371621 GZF1Q9H116 711 aaPredicted RBP15.62■□□□□ 0.09
PTPN1-201ENST00000371621 CCER2I3L3R5 266 aa15.61■□□□□ 0.09
PTPN1-201ENST00000371621 RGS3P49796 1198 aa15.61■□□□□ 0.09
PTPN1-201ENST00000371621 P3H3Q8IVL6 736 aa15.6■□□□□ 0.09
PTPN1-201ENST00000371621 WIZO95785 1651 aa15.58■□□□□ 0.08
PTPN1-201ENST00000371621 CANXP27824 592 aaKnown RBP15.56■□□□□ 0.08
PTPN1-201ENST00000371621 CLIP1P30622 1438 aa15.56■□□□□ 0.08
PTPN1-201ENST00000371621 SPRYD3Q8NCJ5 442 aa15.55■□□□□ 0.08
PTPN1-201ENST00000371621 SLKQ9H2G2 1235 aaPredicted RBP15.55■□□□□ 0.08
PTPN1-201ENST00000371621 ZMYND15Q9H091 742 aa15.54■□□□□ 0.08
PTPN1-201ENST00000371621 USP35Q9P2H5 1018 aa15.54■□□□□ 0.08
PTPN1-201ENST00000371621 PLEKHG5O94827 1062 aa15.53■□□□□ 0.08
PTPN1-201ENST00000371621 UPF2Q9HAU5 1272 aaKnown RBP15.52■□□□□ 0.08
PTPN1-201ENST00000371621 ZBTB7CA1YPR0 619 aa15.52■□□□□ 0.07
PTPN1-201ENST00000371621 FRAT1Q92837 279 aaPredicted RBP15.52■□□□□ 0.07
PTPN1-201ENST00000371621 TNIKQ9UKE5 1360 aa15.49■□□□□ 0.07
PTPN1-201ENST00000371621 BAZ1AQ9NRL2 1556 aaPredicted RBP15.48■□□□□ 0.07
PTPN1-201ENST00000371621 TNNT2P45379 298 aaPredicted RBP15.48■□□□□ 0.07
PTPN1-201ENST00000371621 EIF4G2P78344 907 aaKnown RBP eCLIP15.47■□□□□ 0.074e-6■□□□□ 10.5
PTPN1-201ENST00000371621 PDE4AP27815 886 aa15.46■□□□□ 0.07
PTPN1-201ENST00000371621 NFKBIBQ15653 356 aa15.46■□□□□ 0.06
PTPN1-201ENST00000371621 BECN1Q14457 450 aa15.44■□□□□ 0.06
PTPN1-201ENST00000371621 L1TD1Q5T7N2 865 aaKnown RBP15.43■□□□□ 0.06
PTPN1-201ENST00000371621 SLC4A1APQ9BWU0 796 aaKnown RBP15.43■□□□□ 0.06
PTPN1-201ENST00000371621 TCERG1O14776 1098 aaKnown RBP15.4■□□□□ 0.06
PTPN1-201ENST00000371621 CDK11BP21127 795 aaKnown RBP15.4■□□□□ 0.06
PTPN1-201ENST00000371621 CHIC2Q9UKJ5 165 aa15.4■□□□□ 0.06
PTPN1-201ENST00000371621 DNTTIP2Q5QJE6 756 aaKnown RBP15.4■□□□□ 0.06
PTPN1-201ENST00000371621 NCLP19338 710 aaKnown RBP15.39■□□□□ 0.05
PTPN1-201ENST00000371621 DHX57Q6P158 1386 aaKnown RBP15.37■□□□□ 0.05
PTPN1-201ENST00000371621 SOGA1O94964 1423 aa15.37■□□□□ 0.05
PTPN1-201ENST00000371621 GOLGA3Q08378 1498 aa15.36■□□□□ 0.05
PTPN1-201ENST00000371621 FRAT2O75474 233 aaPredicted RBP15.36■□□□□ 0.05
PTPN1-201ENST00000371621 CCDC88BA6NC98 1476 aa15.35■□□□□ 0.05
PTPN1-201ENST00000371621 KANK4Q5T7N3 995 aaPredicted RBP15.35■□□□□ 0.05
PTPN1-201ENST00000371621 ABCC8Q09428 1581 aa15.35■□□□□ 0.05
PTPN1-201ENST00000371621 GOLGA6L3A6NEY3 463 aa15.34■□□□□ 0.05
PTPN1-201ENST00000371621 ARID3CA6NKF2 412 aa15.34■□□□□ 0.05
PTPN1-201ENST00000371621 EXOC6Q8TAG9 804 aa15.33■□□□□ 0.04
PTPN1-201ENST00000371621 FAM13BQ9NYF5 915 aa15.33■□□□□ 0.04
PTPN1-201ENST00000371621 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.32■□□□□ 0.04
PTPN1-201ENST00000371621 MYH16Q9H6N6 1097 aa15.31■□□□□ 0.04
PTPN1-201ENST00000371621 TPRNQ4KMQ1 711 aa15.3■□□□□ 0.04
PTPN1-201ENST00000371621 MSNP26038 577 aaKnown RBP15.3■□□□□ 0.04
PTPN1-201ENST00000371621 SMARCA4P51532 1647 aa15.29■□□□□ 0.04
PTPN1-201ENST00000371621 HSPA5P11021 654 aaKnown RBP15.29■□□□□ 0.04
PTPN1-201ENST00000371621 FAM43AQ8N2R8 423 aa15.29■□□□□ 0.04
PTPN1-201ENST00000371621 PPP1R15AO75807 674 aaPredicted RBP15.28■□□□□ 0.04
PTPN1-201ENST00000371621 PLIN1O60240 522 aa15.28■□□□□ 0.04
PTPN1-201ENST00000371621 NUDCQ9Y266 331 aa15.28■□□□□ 0.04
PTPN1-201ENST00000371621 PTMAP06454 111 aaKnown RBP15.27■□□□□ 0.04
PTPN1-201ENST00000371621 SLC24A1O60721 1099 aa15.26■□□□□ 0.03
PTPN1-201ENST00000371621 RCAN3Q9UKA8 241 aa15.26■□□□□ 0.03
PTPN1-201ENST00000371621 RBM10P98175 930 aaKnown RBP15.25■□□□□ 0.03
PTPN1-201ENST00000371621 RRP7BPQ9NSQ0 103 aa15.24■□□□□ 0.03
PTPN1-201ENST00000371621 TOP2AP11388 1531 aaKnown RBP15.24■□□□□ 0.03
PTPN1-201ENST00000371621 CCNB3Q8WWL7 1395 aa15.23■□□□□ 0.03
PTPN1-201ENST00000371621 SKAP1Q86WV1 359 aa15.22■□□□□ 0.03
PTPN1-201ENST00000371621 KDM2AQ9Y2K7 1162 aa15.22■□□□□ 0.03
PTPN1-201ENST00000371621 RAB3GAP2Q9H2M9 1393 aa15.22■□□□□ 0.03
PTPN1-201ENST00000371621 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
PTPN1-201ENST00000371621 CCDC184Q52MB2 194 aa15.21■□□□□ 0.02
PTPN1-201ENST00000371621 PLCB2Q00722 1185 aa15.18■□□□□ 0.02
PTPN1-201ENST00000371621 MAPK8IP2Q13387 824 aaPredicted RBP15.18■□□□□ 0.02
PTPN1-201ENST00000371621 RRP9O43818 475 aaKnown RBP15.18■□□□□ 0.02
PTPN1-201ENST00000371621 EEA1Q15075 1411 aa15.17■□□□□ 0.02
PTPN1-201ENST00000371621 VPS8Q8N3P4 1428 aa15.17■□□□□ 0.02
PTPN1-201ENST00000371621 WDR43Q15061 677 aaKnown RBP eCLIP15.16■□□□□ 0.02
PTPN1-201ENST00000371621 GOLGA6L22H0YM25 854 aa15.16■□□□□ 0.02
PTPN1-201ENST00000371621 ZBED9Q6R2W3 1325 aa15.16■□□□□ 0.02
PTPN1-201ENST00000371621 PRKRIP1Q9H875 184 aaPredicted RBP15.15■□□□□ 0.02
PTPN1-201ENST00000371621 POGKQ9P215 609 aa15.15■□□□□ 0.02
PTPN1-201ENST00000371621 UNC13AQ9UPW8 1703 aa15.15■□□□□ 0.02
PTPN1-201ENST00000371621 SMARCA2P51531 1590 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms