RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 HIRIP3Q9BW71 556 aaPredicted RBP26.38■■□□□ 1.81
LMO4-202ENST00000370544 UPF2Q9HAU5 1272 aaKnown RBP26.38■■□□□ 1.81
LMO4-202ENST00000370544 EIF4G2P78344 907 aaKnown RBP eCLIP26.37■■□□□ 1.81
LMO4-202ENST00000370544 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.37■■□□□ 1.81
LMO4-202ENST00000370544 HSP90AA1P07900 732 aaKnown RBP26.34■■□□□ 1.81
LMO4-202ENST00000370544 CCDC136Q96JN2 1154 aa26.33■■□□□ 1.81
LMO4-202ENST00000370544 CEP164Q9UPV0 1460 aa26.32■■□□□ 1.8
LMO4-202ENST00000370544 MIER1Q8N108 512 aa26.31■■□□□ 1.8
LMO4-202ENST00000370544 TNIKQ9UKE5 1360 aa26.3■■□□□ 1.8
LMO4-202ENST00000370544 BAZ1AQ9NRL2 1556 aaPredicted RBP26.24■■□□□ 1.79
LMO4-202ENST00000370544 CFDP1Q9UEE9 299 aaPredicted RBP26.22■■□□□ 1.79
LMO4-202ENST00000370544 PPP1R15AO75807 674 aaPredicted RBP26.18■■□□□ 1.78
LMO4-202ENST00000370544 RGL3Q3MIN7 710 aa26.17■■□□□ 1.78
LMO4-202ENST00000370544 ANP32BQ92688 251 aaKnown RBP26.17■■□□□ 1.78
LMO4-202ENST00000370544 SENP3Q9H4L4 574 aaPredicted RBP26.17■■□□□ 1.78
LMO4-202ENST00000370544 SCAF1Q9H7N4 1312 aaKnown RBP26.13■■□□□ 1.77
LMO4-202ENST00000370544 IRX6P78412 446 aaPredicted RBP26.12■■□□□ 1.77
LMO4-202ENST00000370544 ERCC6Q03468 1493 aa26.09■■□□□ 1.77
LMO4-202ENST00000370544 CECR2Q9BXF3 1484 aa26.08■■□□□ 1.77
LMO4-202ENST00000370544 MYH16Q9H6N6 1097 aa26.04■■□□□ 1.76
LMO4-202ENST00000370544 CDCA8Q53HL2 280 aa26.02■■□□□ 1.76
LMO4-202ENST00000370544 ZBTB7CA1YPR0 619 aa26.01■■□□□ 1.76
LMO4-202ENST00000370544 CARD11Q9BXL7 1154 aa26.01■■□□□ 1.75
LMO4-202ENST00000370544 C14orf37Q86TY3 774 aa26.01■■□□□ 1.75
LMO4-202ENST00000370544 KNSTRNQ9Y448 316 aa25.97■■□□□ 1.75
LMO4-202ENST00000370544 FHAD1B1AJZ9 1412 aa25.96■■□□□ 1.75
LMO4-202ENST00000370544 CFAP53Q96M91 514 aa25.96■■□□□ 1.75
LMO4-202ENST00000370544 ARID4BQ4LE39 1312 aaPredicted RBP25.95■■□□□ 1.74
LMO4-202ENST00000370544 PLEKHG5O94827 1062 aa25.94■■□□□ 1.74
LMO4-202ENST00000370544 CUX2O14529 1486 aa25.94■■□□□ 1.74
LMO4-202ENST00000370544 CARMIL1Q5VZK9 1371 aa25.93■■□□□ 1.74
LMO4-202ENST00000370544 CCNB3Q8WWL7 1395 aa25.93■■□□□ 1.74
LMO4-202ENST00000370544 SIN3AQ96ST3 1273 aa25.92■■□□□ 1.74
LMO4-202ENST00000370544 EIF4G1Q04637 1599 aaKnown RBP25.92■■□□□ 1.74
LMO4-202ENST00000370544 NBR1Q14596 966 aa25.91■■□□□ 1.74
LMO4-202ENST00000370544 SOGA1O94964 1423 aa25.9■■□□□ 1.74
LMO4-202ENST00000370544 A0A0G2JS52 829 aa25.89■■□□□ 1.73
LMO4-202ENST00000370544 SENP3-EIF4A1A0A087X0R7 540 aa25.84■■□□□ 1.73
LMO4-202ENST00000370544 PPM1GO15355 546 aaPredicted RBP25.81■■□□□ 1.72
LMO4-202ENST00000370544 CCDC88BA6NC98 1476 aa25.77■■□□□ 1.72
LMO4-202ENST00000370544 ARXQ96QS3 562 aa25.76■■□□□ 1.71
LMO4-202ENST00000370544 POGKQ9P215 609 aa25.76■■□□□ 1.71
LMO4-202ENST00000370544 MROH2BQ7Z745 1585 aa25.76■■□□□ 1.71
LMO4-202ENST00000370544 DDRGK1Q96HY6 314 aa25.73■■□□□ 1.71
LMO4-202ENST00000370544 SUPT16HQ9Y5B9 1047 aaKnown RBP25.73■■□□□ 1.71
LMO4-202ENST00000370544 MAPK8IP3Q9UPT6 1336 aa25.72■■□□□ 1.71
LMO4-202ENST00000370544 BECN1Q14457 450 aa25.72■■□□□ 1.71
LMO4-202ENST00000370544 EIF5BO60841 1220 aaKnown RBP25.72■■□□□ 1.71
LMO4-202ENST00000370544 NEUROD2Q15784 382 aa25.71■■□□□ 1.71
LMO4-202ENST00000370544 HAP1P54257 671 aaPredicted RBP25.7■■□□□ 1.71
LMO4-202ENST00000370544 NUDCQ9Y266 331 aa25.7■■□□□ 1.71
LMO4-202ENST00000370544 ABCC8Q09428 1581 aa25.7■■□□□ 1.7
LMO4-202ENST00000370544 FTSJ3Q8IY81 847 aaKnown RBP25.69■■□□□ 1.7
LMO4-202ENST00000370544 KANK1Q14678 1352 aa25.69■■□□□ 1.7
LMO4-202ENST00000370544 VPS8Q8N3P4 1428 aa25.68■■□□□ 1.7
LMO4-202ENST00000370544 SMARCA2P51531 1590 aa25.68■■□□□ 1.7
LMO4-202ENST00000370544 DCAF11Q8TEB1 546 aa25.68■■□□□ 1.7
LMO4-202ENST00000370544 ARHGAP35Q9NRY4 1499 aa25.67■■□□□ 1.7
LMO4-202ENST00000370544 CC2D1BQ5T0F9 858 aaKnown RBP25.67■■□□□ 1.7
LMO4-202ENST00000370544 LAS1LQ9Y4W2 734 aaKnown RBP25.64■■□□□ 1.7
LMO4-202ENST00000370544 SETD5Q9C0A6 1442 aa25.64■■□□□ 1.69
LMO4-202ENST00000370544 TNNT2P45379 298 aaPredicted RBP25.63■■□□□ 1.69
LMO4-202ENST00000370544 TMF1P82094 1093 aa25.63■■□□□ 1.69
LMO4-202ENST00000370544 TIMELESSQ9UNS1 1208 aa25.62■■□□□ 1.69
LMO4-202ENST00000370544 PDS5BQ9NTI5 1447 aa25.57■■□□□ 1.68
LMO4-202ENST00000370544 KANK4Q5T7N3 995 aaPredicted RBP25.55■■□□□ 1.68
LMO4-202ENST00000370544 CASC1Q6TDU7 716 aa25.55■■□□□ 1.68
LMO4-202ENST00000370544 CARMIL2Q6F5E8 1435 aa25.55■■□□□ 1.68
LMO4-202ENST00000370544 LMOD2Q6P5Q4 547 aa25.55■■□□□ 1.68
LMO4-202ENST00000370544 NCLP19338 710 aaKnown RBP25.54■■□□□ 1.68
LMO4-202ENST00000370544 U2SURPO15042 1029 aaKnown RBP25.54■■□□□ 1.68
LMO4-202ENST00000370544 PPP4R2Q9NY27 417 aa25.54■■□□□ 1.68
LMO4-202ENST00000370544 FRAT1Q92837 279 aaPredicted RBP25.53■■□□□ 1.68
LMO4-202ENST00000370544 GOLGA6L22H0YM25 854 aa25.51■■□□□ 1.67
LMO4-202ENST00000370544 PKD2Q13563 968 aa25.49■■□□□ 1.67
LMO4-202ENST00000370544 TDRD9Q8NDG6 1382 aaKnown RBP25.49■■□□□ 1.67
LMO4-202ENST00000370544 PNNQ9H307 717 aaKnown RBP25.49■■□□□ 1.67
LMO4-202ENST00000370544 FMN1Q68DA7 1419 aa25.48■■□□□ 1.67
LMO4-202ENST00000370544 TOP2AP11388 1531 aaKnown RBP25.48■■□□□ 1.67
LMO4-202ENST00000370544 MLECQ14165 292 aa25.48■■□□□ 1.67
LMO4-202ENST00000370544 HSPA5P11021 654 aaKnown RBP25.47■■□□□ 1.67
LMO4-202ENST00000370544 HDGFP51858 240 aaKnown RBP25.46■■□□□ 1.67
LMO4-202ENST00000370544 SRPK2P78362 688 aaKnown RBP25.45■■□□□ 1.66
LMO4-202ENST00000370544 ANP32EQ9BTT0 268 aa25.45■■□□□ 1.66
LMO4-202ENST00000370544 CHMP4BQ9H444 224 aaKnown RBP25.44■■□□□ 1.66
LMO4-202ENST00000370544 RGS3P49796 1198 aa25.44■■□□□ 1.66
LMO4-202ENST00000370544 MS4A1P11836 297 aa25.44■■□□□ 1.66
LMO4-202ENST00000370544 FOXD1Q16676 465 aa25.43■■□□□ 1.66
LMO4-202ENST00000370544 GGT6Q6P531 493 aa25.42■■□□□ 1.66
LMO4-202ENST00000370544 WIZO95785 1651 aa25.42■■□□□ 1.66
LMO4-202ENST00000370544 CCER2I3L3R5 266 aa25.4■■□□□ 1.66
LMO4-202ENST00000370544 MORC1Q86VD1 984 aa25.4■■□□□ 1.66
LMO4-202ENST00000370544 RAB3GAP2Q9H2M9 1393 aa25.39■■□□□ 1.65
LMO4-202ENST00000370544 SAFB2Q14151 953 aaKnown RBP eCLIP25.38■■□□□ 1.65
LMO4-202ENST00000370544 MPHOSPH9Q99550 1183 aa25.36■■□□□ 1.65
LMO4-202ENST00000370544 TRHP20396 242 aaPredicted RBP25.35■■□□□ 1.65
LMO4-202ENST00000370544 TRIM44Q96DX7 344 aaPredicted RBP25.34■■□□□ 1.65
LMO4-202ENST00000370544 ANKRD30AQ9BXX3 1397 aa25.34■■□□□ 1.65
LMO4-202ENST00000370544 NUP155O75694 1391 aa25.33■■□□□ 1.65
LMO4-202ENST00000370544 KTN1Q86UP2 1357 aaKnown RBP25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms