RNA–Protein interactions for RNA: ENST00000369089.3

PRDM1-201, Transcript of PR/SET domain 1, humanhuman

TSL 1 (best) BASIC

Gene PRDM1, Length 4,675 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM1-201ENST00000369089 HNRNPUQ00839 825 aaKnown RBP eCLIP13.97□□□□□ -0.17
PRDM1-201ENST00000369089 ARXQ96QS3 562 aa13.96□□□□□ -0.17
PRDM1-201ENST00000369089 CNGB1Q14028 1251 aaPredicted RBP13.96□□□□□ -0.17
PRDM1-201ENST00000369089 PPP4R2Q9NY27 417 aa13.96□□□□□ -0.18
PRDM1-201ENST00000369089 USP35Q9P2H5 1018 aa13.95□□□□□ -0.18
PRDM1-201ENST00000369089 ZMYND15Q9H091 742 aa13.9□□□□□ -0.18
PRDM1-201ENST00000369089 L1TD1Q5T7N2 865 aaKnown RBP13.9□□□□□ -0.18
PRDM1-201ENST00000369089 RSF1Q96T23 1441 aaPredicted RBP13.89□□□□□ -0.19
PRDM1-201ENST00000369089 RB1CC1Q8TDY2 1594 aa13.88□□□□□ -0.19
PRDM1-201ENST00000369089 AMER1Q5JTC6 1135 aaPredicted RBP13.88□□□□□ -0.19
PRDM1-201ENST00000369089 IPO9Q96P70 1041 aaKnown RBP13.87□□□□□ -0.19
PRDM1-201ENST00000369089 ARID4BQ4LE39 1312 aaPredicted RBP13.86□□□□□ -0.19
PRDM1-201ENST00000369089 NACADO15069 1562 aa13.86□□□□□ -0.19
PRDM1-201ENST00000369089 PDIA4P13667 645 aaKnown RBP13.84□□□□□ -0.19
PRDM1-201ENST00000369089 DDX10Q13206 875 aaKnown RBP13.84□□□□□ -0.19
PRDM1-201ENST00000369089 FAM50AQ14320 339 aaKnown RBP13.84□□□□□ -0.19
PRDM1-201ENST00000369089 GSE1Q14687 1217 aa13.81□□□□□ -0.2
PRDM1-201ENST00000369089 CANXP27824 592 aaKnown RBP13.8□□□□□ -0.2
PRDM1-201ENST00000369089 RRP9O43818 475 aaKnown RBP13.78□□□□□ -0.2
PRDM1-201ENST00000369089 P3H3Q8IVL6 736 aa13.75□□□□□ -0.21
PRDM1-201ENST00000369089 B4GALNT3Q6L9W6 998 aa13.74□□□□□ -0.21
PRDM1-201ENST00000369089 POLR3GLQ9BT43 218 aa13.73□□□□□ -0.21
PRDM1-201ENST00000369089 FAM43AQ8N2R8 423 aa13.73□□□□□ -0.21
PRDM1-201ENST00000369089 FBLN2P98095 1184 aa13.72□□□□□ -0.21
PRDM1-201ENST00000369089 MSH5O43196 834 aa13.71□□□□□ -0.21
PRDM1-201ENST00000369089 PTMSP20962 102 aa13.71□□□□□ -0.21
PRDM1-201ENST00000369089 BECN1Q14457 450 aa13.71□□□□□ -0.21
PRDM1-201ENST00000369089 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.21
PRDM1-201ENST00000369089 BRPF3Q9ULD4 1205 aa13.7□□□□□ -0.22
PRDM1-201ENST00000369089 TAF7LQ5H9L4 462 aa13.68□□□□□ -0.22
PRDM1-201ENST00000369089 RBM10P98175 930 aaKnown RBP13.67□□□□□ -0.22
PRDM1-201ENST00000369089 CECR2Q9BXF3 1484 aa13.67□□□□□ -0.22
PRDM1-201ENST00000369089 DNTTIP2Q5QJE6 756 aaKnown RBP13.66□□□□□ -0.22
PRDM1-201ENST00000369089 MSNP26038 577 aaKnown RBP13.64□□□□□ -0.23
PRDM1-201ENST00000369089 FAM9BQ8IZU0 186 aa13.63□□□□□ -0.23
PRDM1-201ENST00000369089 ARID3AQ99856 593 aa13.62□□□□□ -0.23
PRDM1-201ENST00000369089 TNNT3P45378 269 aaPredicted RBP13.61□□□□□ -0.23
PRDM1-201ENST00000369089 MAP7D2Q96T17 732 aa13.61□□□□□ -0.23
PRDM1-201ENST00000369089 APPP05067 770 aa13.6□□□□□ -0.23
PRDM1-201ENST00000369089 ARID3CA6NKF2 412 aa13.59□□□□□ -0.23
PRDM1-201ENST00000369089 BAZ1AQ9NRL2 1556 aaPredicted RBP13.59□□□□□ -0.23
PRDM1-201ENST00000369089 GOLGA6L3A6NEY3 463 aa13.58□□□□□ -0.24
PRDM1-201ENST00000369089 CCER2I3L3R5 266 aa13.57□□□□□ -0.24
PRDM1-201ENST00000369089 BBXQ8WY36 941 aaPredicted RBP13.56□□□□□ -0.24
PRDM1-201ENST00000369089 BAZ1BQ9UIG0 1483 aaKnown RBP13.56□□□□□ -0.24
PRDM1-201ENST00000369089 TPM2P07951 284 aa13.55□□□□□ -0.24
PRDM1-201ENST00000369089 BCL11BQ9C0K0 894 aaPredicted RBP13.55□□□□□ -0.24
PRDM1-201ENST00000369089 WRNQ14191 1432 aaPredicted RBP eCLIP13.54□□□□□ -0.24
PRDM1-201ENST00000369089 PAK3O75914 559 aaPredicted RBP13.52□□□□□ -0.24
PRDM1-201ENST00000369089 TCERG1O14776 1098 aaKnown RBP13.52□□□□□ -0.24
PRDM1-201ENST00000369089 EEA1Q15075 1411 aa13.52□□□□□ -0.24
PRDM1-201ENST00000369089 FGD1P98174 961 aa13.52□□□□□ -0.25
PRDM1-201ENST00000369089 PTMAP06454 111 aaKnown RBP13.51□□□□□ -0.25
PRDM1-201ENST00000369089 MTERF4Q7Z6M4 381 aaKnown RBP13.51□□□□□ -0.25
PRDM1-201ENST00000369089 MYH16Q9H6N6 1097 aa13.51□□□□□ -0.25
PRDM1-201ENST00000369089 MRS2Q9HD23 443 aa13.51□□□□□ -0.25
PRDM1-201ENST00000369089 GOLGA6L22H0YM25 854 aa13.5□□□□□ -0.25
PRDM1-201ENST00000369089 CLIP1P30622 1438 aa13.49□□□□□ -0.25
PRDM1-201ENST00000369089 FAM13BQ9NYF5 915 aa13.49□□□□□ -0.25
PRDM1-201ENST00000369089 FRAT1Q92837 279 aaPredicted RBP13.49□□□□□ -0.25
PRDM1-201ENST00000369089 MROH2BQ7Z745 1585 aa13.49□□□□□ -0.25
PRDM1-201ENST00000369089 CEP162Q5TB80 1403 aa13.45□□□□□ -0.26
PRDM1-201ENST00000369089 PDCL3Q9H2J4 239 aa13.45□□□□□ -0.26
PRDM1-201ENST00000369089 PAXIP1Q6ZW49 1069 aaPredicted RBP13.44□□□□□ -0.26
PRDM1-201ENST00000369089 GOLGA3Q08378 1498 aa13.44□□□□□ -0.26
PRDM1-201ENST00000369089 ZNF777Q9ULD5 760 aaPredicted RBP13.43□□□□□ -0.26
PRDM1-201ENST00000369089 C11orf95C9JLR9 678 aaPredicted RBP13.43□□□□□ -0.26
PRDM1-201ENST00000369089 CHAF1AQ13111 956 aaPredicted RBP13.42□□□□□ -0.26
PRDM1-201ENST00000369089 NFKBIBQ15653 356 aa13.42□□□□□ -0.26
PRDM1-201ENST00000369089 NAP1L2Q9ULW6 460 aaPredicted RBP13.42□□□□□ -0.26
PRDM1-201ENST00000369089 HAP1P54257 671 aaPredicted RBP13.41□□□□□ -0.26
PRDM1-201ENST00000369089 ZNF771Q7L3S4 317 aaPredicted RBP13.41□□□□□ -0.26
PRDM1-201ENST00000369089 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.4□□□□□ -0.26
PRDM1-201ENST00000369089 GZF1Q9H116 711 aaPredicted RBP13.4□□□□□ -0.26
PRDM1-201ENST00000369089 TNIKQ9UKE5 1360 aa13.4□□□□□ -0.26
PRDM1-201ENST00000369089 AAMPQ13685 434 aa13.39□□□□□ -0.27
PRDM1-201ENST00000369089 TAF3Q5VWG9 929 aa13.39□□□□□ -0.27
PRDM1-201ENST00000369089 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.38□□□□□ -0.27
PRDM1-201ENST00000369089 KIF27Q86VH2 1401 aa13.37□□□□□ -0.27
PRDM1-201ENST00000369089 CCDC88BA6NC98 1476 aa13.36□□□□□ -0.27
PRDM1-201ENST00000369089 CEP164Q9UPV0 1460 aa13.35□□□□□ -0.27
PRDM1-201ENST00000369089 SLC4A1APQ9BWU0 796 aaKnown RBP13.34□□□□□ -0.27
PRDM1-201ENST00000369089 RGS3P49796 1198 aa13.34□□□□□ -0.27
PRDM1-201ENST00000369089 PDE4AP27815 886 aa13.34□□□□□ -0.27
PRDM1-201ENST00000369089 CALD1Q05682 793 aaKnown RBP13.34□□□□□ -0.27
PRDM1-201ENST00000369089 TONSLQ96HA7 1378 aa13.34□□□□□ -0.27
PRDM1-201ENST00000369089 KCNH8Q96L42 1107 aa13.33□□□□□ -0.27
PRDM1-201ENST00000369089 SOGA1O94964 1423 aa13.33□□□□□ -0.28
PRDM1-201ENST00000369089 MTUS2Q5JR59 1369 aa13.33□□□□□ -0.28
PRDM1-201ENST00000369089 CHMP7Q8WUX9 453 aaPredicted RBP13.32□□□□□ -0.28
PRDM1-201ENST00000369089 HIRIP3Q9BW71 556 aaPredicted RBP13.32□□□□□ -0.28
PRDM1-201ENST00000369089 CHIC2Q9UKJ5 165 aa13.31□□□□□ -0.28
PRDM1-201ENST00000369089 TMC1Q8TDI8 760 aa13.3□□□□□ -0.28
PRDM1-201ENST00000369089 BRD2P25440 801 aaKnown RBP13.3□□□□□ -0.28
PRDM1-201ENST00000369089 SLKQ9H2G2 1235 aaPredicted RBP13.3□□□□□ -0.28
PRDM1-201ENST00000369089 CHMP4BQ9H444 224 aaKnown RBP13.3□□□□□ -0.28
PRDM1-201ENST00000369089 CCDC66A2RUB6 948 aa13.3□□□□□ -0.28
PRDM1-201ENST00000369089 ZHX1Q9UKY1 873 aaPredicted RBP13.28□□□□□ -0.28
PRDM1-201ENST00000369089 PATL2C9JE40 543 aaKnown RBP13.28□□□□□ -0.28
PRDM1-201ENST00000369089 KIAA2012Q0VF49 1180 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms