RNA–Protein interactions for RNA: ENST00000361373.8

LDB3-202, Transcript of LIM domain binding 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB3, Length 5,297 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-202ENST00000361373 PDS5BQ9NTI5 1447 aa18.17■□□□□ 0.5
LDB3-202ENST00000361373 CARMIL1Q5VZK9 1371 aa18.17■□□□□ 0.5
LDB3-202ENST00000361373 PPP1R15AO75807 674 aaPredicted RBP18.14■□□□□ 0.49
LDB3-202ENST00000361373 HNRNPUQ00839 825 aaKnown RBP eCLIP18.14■□□□□ 0.49
LDB3-202ENST00000361373 CUX2O14529 1486 aa18.14■□□□□ 0.49
LDB3-202ENST00000361373 WDR43Q15061 677 aaKnown RBP eCLIP18.14■□□□□ 0.49
LDB3-202ENST00000361373 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.12■□□□□ 0.49
LDB3-202ENST00000361373 CDCA8Q53HL2 280 aa18.11■□□□□ 0.49
LDB3-202ENST00000361373 FAM9BQ8IZU0 186 aa18.1■□□□□ 0.49
LDB3-202ENST00000361373 MROH2BQ7Z745 1585 aa18.07■□□□□ 0.48
LDB3-202ENST00000361373 ANP32AP39687 249 aaKnown RBP18.06■□□□□ 0.48
LDB3-202ENST00000361373 CCNB3Q8WWL7 1395 aa18.06■□□□□ 0.48
LDB3-202ENST00000361373 MRS2Q9HD23 443 aa18.06■□□□□ 0.48
LDB3-202ENST00000361373 CCDC88BA6NC98 1476 aa18.05■□□□□ 0.48
LDB3-202ENST00000361373 BCL11AQ9H165 835 aa18.05■□□□□ 0.48
LDB3-202ENST00000361373 ARID4BQ4LE39 1312 aaPredicted RBP18.03■□□□□ 0.48
LDB3-202ENST00000361373 CARMIL2Q6F5E8 1435 aa18.01■□□□□ 0.47
LDB3-202ENST00000361373 UPF2Q9HAU5 1272 aaKnown RBP18■□□□□ 0.47
LDB3-202ENST00000361373 RGL3Q3MIN7 710 aa17.99■□□□□ 0.47
LDB3-202ENST00000361373 SOGA1O94964 1423 aa17.97■□□□□ 0.47
LDB3-202ENST00000361373 EIF4G1Q04637 1599 aaKnown RBP17.96■□□□□ 0.47
LDB3-202ENST00000361373 FKBP8Q14318 412 aa17.95■□□□□ 0.46
LDB3-202ENST00000361373 CADPSQ9ULU8 1353 aa17.95■□□□□ 0.46
LDB3-202ENST00000361373 C14orf37Q86TY3 774 aa17.94■□□□□ 0.46
LDB3-202ENST00000361373 CFAP53Q96M91 514 aa17.94■□□□□ 0.46
LDB3-202ENST00000361373 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
LDB3-202ENST00000361373 KANK1Q14678 1352 aa17.93■□□□□ 0.46
LDB3-202ENST00000361373 SALL2Q9Y467 1007 aaPredicted RBP17.92■□□□□ 0.46
LDB3-202ENST00000361373 TIMELESSQ9UNS1 1208 aa17.92■□□□□ 0.46
LDB3-202ENST00000361373 CARD11Q9BXL7 1154 aa17.91■□□□□ 0.46
LDB3-202ENST00000361373 KNSTRNQ9Y448 316 aa17.9■□□□□ 0.46
LDB3-202ENST00000361373 NPM2Q86SE8 214 aaKnown RBP17.9■□□□□ 0.46
LDB3-202ENST00000361373 HDGFP51858 240 aaKnown RBP17.89■□□□□ 0.45
LDB3-202ENST00000361373 SCAF1Q9H7N4 1312 aaKnown RBP17.89■□□□□ 0.45
LDB3-202ENST00000361373 FMN1Q68DA7 1419 aa17.89■□□□□ 0.45
LDB3-202ENST00000361373 VPS8Q8N3P4 1428 aa17.88■□□□□ 0.45
LDB3-202ENST00000361373 CCDC136Q96JN2 1154 aa17.88■□□□□ 0.45
LDB3-202ENST00000361373 HSP90AA1P07900 732 aaKnown RBP17.86■□□□□ 0.45
LDB3-202ENST00000361373 TDRD9Q8NDG6 1382 aaKnown RBP17.85■□□□□ 0.45
LDB3-202ENST00000361373 MYH16Q9H6N6 1097 aa17.85■□□□□ 0.45
LDB3-202ENST00000361373 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.45
LDB3-202ENST00000361373 HIRIP3Q9BW71 556 aaPredicted RBP17.83■□□□□ 0.44
LDB3-202ENST00000361373 POGKQ9P215 609 aa17.83■□□□□ 0.44
LDB3-202ENST00000361373 ARHGAP35Q9NRY4 1499 aa17.82■□□□□ 0.44
LDB3-202ENST00000361373 EFCAB2Q5VUJ9 269 aa17.8■□□□□ 0.44
LDB3-202ENST00000361373 MIER1Q8N108 512 aa17.79■□□□□ 0.44
LDB3-202ENST00000361373 NUDCQ9Y266 331 aa17.78■□□□□ 0.44
LDB3-202ENST00000361373 ABCC8Q09428 1581 aa17.77■□□□□ 0.44
LDB3-202ENST00000361373 HAP1P54257 671 aaPredicted RBP17.77■□□□□ 0.44
LDB3-202ENST00000361373 RAPGEF2Q9Y4G8 1499 aa17.75■□□□□ 0.43
LDB3-202ENST00000361373 ZBTB7CA1YPR0 619 aa17.74■□□□□ 0.43
LDB3-202ENST00000361373 TRHP20396 242 aaPredicted RBP17.74■□□□□ 0.43
LDB3-202ENST00000361373 SETD5Q9C0A6 1442 aa17.74■□□□□ 0.43
LDB3-202ENST00000361373 RSPH4AQ5TD94 716 aa17.74■□□□□ 0.43
LDB3-202ENST00000361373 ANP32BQ92688 251 aaKnown RBP17.73■□□□□ 0.43
LDB3-202ENST00000361373 TMF1P82094 1093 aa17.73■□□□□ 0.43
LDB3-202ENST00000361373 WIZO95785 1651 aa17.72■□□□□ 0.43
LDB3-202ENST00000361373 SIN3AQ96ST3 1273 aa17.71■□□□□ 0.43
LDB3-202ENST00000361373 SENP3Q9H4L4 574 aaPredicted RBP17.71■□□□□ 0.43
LDB3-202ENST00000361373 SMARCA4P51532 1647 aa17.71■□□□□ 0.43
LDB3-202ENST00000361373 DCAF11Q8TEB1 546 aa17.7■□□□□ 0.42
LDB3-202ENST00000361373 PNNQ9H307 717 aaKnown RBP17.7■□□□□ 0.42
LDB3-202ENST00000361373 MAPK8IP3Q9UPT6 1336 aa17.7■□□□□ 0.42
LDB3-202ENST00000361373 ANKRD30AQ9BXX3 1397 aa17.69■□□□□ 0.42
LDB3-202ENST00000361373 A0A0G2JS52 829 aa17.69■□□□□ 0.42
LDB3-202ENST00000361373 EIF5BO60841 1220 aaKnown RBP17.66■□□□□ 0.42
LDB3-202ENST00000361373 PPM1GO15355 546 aaPredicted RBP17.66■□□□□ 0.42
LDB3-202ENST00000361373 GGT6Q6P531 493 aa17.64■□□□□ 0.42
LDB3-202ENST00000361373 JPH4Q96JJ6 628 aa17.64■□□□□ 0.42
LDB3-202ENST00000361373 PKD2Q13563 968 aa17.64■□□□□ 0.41
LDB3-202ENST00000361373 FANCD2Q9BXW9 1451 aa17.63■□□□□ 0.41
LDB3-202ENST00000361373 CHMP4BQ9H444 224 aaKnown RBP17.63■□□□□ 0.41
LDB3-202ENST00000361373 CCDC18Q5T9S5 1454 aa17.62■□□□□ 0.41
LDB3-202ENST00000361373 MLECQ14165 292 aa17.62■□□□□ 0.41
LDB3-202ENST00000361373 KANK4Q5T7N3 995 aaPredicted RBP17.62■□□□□ 0.41
LDB3-202ENST00000361373 PLEKHG5O94827 1062 aa17.61■□□□□ 0.41
LDB3-202ENST00000361373 MS4A1P11836 297 aa17.6■□□□□ 0.41
LDB3-202ENST00000361373 LMOD2Q6P5Q4 547 aa17.58■□□□□ 0.41
LDB3-202ENST00000361373 NUP155O75694 1391 aa17.58■□□□□ 0.41
LDB3-202ENST00000361373 FTSJ3Q8IY81 847 aaKnown RBP17.56■□□□□ 0.4
LDB3-202ENST00000361373 SRPK2P78362 688 aaKnown RBP17.56■□□□□ 0.4
LDB3-202ENST00000361373 MPHOSPH9Q99550 1183 aa17.55■□□□□ 0.4
LDB3-202ENST00000361373 SPAG9O60271 1321 aaKnown RBP17.54■□□□□ 0.4
LDB3-202ENST00000361373 FHOD3Q2V2M9 1422 aa17.54■□□□□ 0.4
LDB3-202ENST00000361373 BECN1Q14457 450 aa17.52■□□□□ 0.39
LDB3-202ENST00000361373 HDGFL2Q7Z4V5 671 aaPredicted RBP17.51■□□□□ 0.39
LDB3-202ENST00000361373 U2SURPO15042 1029 aaKnown RBP17.5■□□□□ 0.39
LDB3-202ENST00000361373 KIF3BO15066 747 aa17.5■□□□□ 0.39
LDB3-202ENST00000361373 CC2D1BQ5T0F9 858 aaKnown RBP17.5■□□□□ 0.39
LDB3-202ENST00000361373 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
LDB3-202ENST00000361373 NEUROD2Q15784 382 aa17.5■□□□□ 0.39
LDB3-202ENST00000361373 NCAPD3P42695 1498 aa17.5■□□□□ 0.39
LDB3-202ENST00000361373 DDRGK1Q96HY6 314 aa17.5■□□□□ 0.39
LDB3-202ENST00000361373 MORC1Q86VD1 984 aa17.5■□□□□ 0.39
LDB3-202ENST00000361373 CCER2I3L3R5 266 aa17.49■□□□□ 0.39
LDB3-202ENST00000361373 IRX6P78412 446 aaPredicted RBP17.49■□□□□ 0.39
LDB3-202ENST00000361373 CASC1Q6TDU7 716 aa17.49■□□□□ 0.39
LDB3-202ENST00000361373 PTPRGP23470 1445 aa17.48■□□□□ 0.39
LDB3-202ENST00000361373 EIF3AQ14152 1382 aaKnown RBP17.48■□□□□ 0.39
LDB3-202ENST00000361373 TNNT2P45379 298 aaPredicted RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms