RNA–Protein interactions for RNA: ENST00000355133.7

SCN8A-202, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 1 (best) BASIC

Gene SCN8A, Length 5,820 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-202ENST00000355133 PPP1R15AO75807 674 aaPredicted RBP17.63■□□□□ 0.41
SCN8A-202ENST00000355133 NBR1Q14596 966 aa17.59■□□□□ 0.41
SCN8A-202ENST00000355133 DCAF1Q9Y4B6 1507 aa17.58■□□□□ 0.41
SCN8A-202ENST00000355133 MYH16Q9H6N6 1097 aa17.58■□□□□ 0.4
SCN8A-202ENST00000355133 CLIP1P30622 1438 aa17.57■□□□□ 0.4
SCN8A-202ENST00000355133 RGL3Q3MIN7 710 aa17.56■□□□□ 0.4
SCN8A-202ENST00000355133 ZCCHC6Q5VYS8 1495 aaKnown RBP17.56■□□□□ 0.4
SCN8A-202ENST00000355133 EIF4G2P78344 907 aaKnown RBP eCLIP17.56■□□□□ 0.4
SCN8A-202ENST00000355133 MIER1Q8N108 512 aa17.53■□□□□ 0.4
SCN8A-202ENST00000355133 PLEKHD1A6NEE1 506 aa17.53■□□□□ 0.4
SCN8A-202ENST00000355133 SENP3-EIF4A1A0A087X0R7 540 aa17.52■□□□□ 0.4
SCN8A-202ENST00000355133 ARID4BQ4LE39 1312 aaPredicted RBP17.5■□□□□ 0.39
SCN8A-202ENST00000355133 HAP1P54257 671 aaPredicted RBP17.46■□□□□ 0.39
SCN8A-202ENST00000355133 PPM1GO15355 546 aaPredicted RBP17.45■□□□□ 0.38
SCN8A-202ENST00000355133 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
SCN8A-202ENST00000355133 CFDP1Q9UEE9 299 aaPredicted RBP17.41■□□□□ 0.38
SCN8A-202ENST00000355133 CFAP53Q96M91 514 aa17.4■□□□□ 0.38
SCN8A-202ENST00000355133 KNSTRNQ9Y448 316 aa17.39■□□□□ 0.37
SCN8A-202ENST00000355133 CDK11BP21127 795 aaKnown RBP17.36■□□□□ 0.37
SCN8A-202ENST00000355133 CARD11Q9BXL7 1154 aa17.36■□□□□ 0.37
SCN8A-202ENST00000355133 GOLGA3Q08378 1498 aa17.36■□□□□ 0.37
SCN8A-202ENST00000355133 NEUROD2Q15784 382 aa17.36■□□□□ 0.37
SCN8A-202ENST00000355133 CEP162Q5TB80 1403 aa17.35■□□□□ 0.37
SCN8A-202ENST00000355133 LAS1LQ9Y4W2 734 aaKnown RBP17.34■□□□□ 0.37
SCN8A-202ENST00000355133 LMOD2Q6P5Q4 547 aa17.34■□□□□ 0.37
SCN8A-202ENST00000355133 CDCA8Q53HL2 280 aa17.33■□□□□ 0.36
SCN8A-202ENST00000355133 BECN1Q14457 450 aa17.32■□□□□ 0.36
SCN8A-202ENST00000355133 NCLP19338 710 aaKnown RBP17.31■□□□□ 0.36
SCN8A-202ENST00000355133 POGKQ9P215 609 aa17.3■□□□□ 0.36
SCN8A-202ENST00000355133 FTSJ3Q8IY81 847 aaKnown RBP17.3■□□□□ 0.36
SCN8A-202ENST00000355133 TNNT2P45379 298 aaPredicted RBP17.29■□□□□ 0.36
SCN8A-202ENST00000355133 TPRNQ4KMQ1 711 aa17.29■□□□□ 0.36
SCN8A-202ENST00000355133 RB1CC1Q8TDY2 1594 aa17.28■□□□□ 0.36
SCN8A-202ENST00000355133 WRNQ14191 1432 aaPredicted RBP eCLIP17.28■□□□□ 0.36
SCN8A-202ENST00000355133 DDRGK1Q96HY6 314 aa17.28■□□□□ 0.36
SCN8A-202ENST00000355133 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.36
SCN8A-202ENST00000355133 EEA1Q15075 1411 aa17.25■□□□□ 0.35
SCN8A-202ENST00000355133 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
SCN8A-202ENST00000355133 KIF27Q86VH2 1401 aa17.24■□□□□ 0.35
SCN8A-202ENST00000355133 SIN3AQ96ST3 1273 aa17.24■□□□□ 0.35
SCN8A-202ENST00000355133 SUPT16HQ9Y5B9 1047 aaKnown RBP17.24■□□□□ 0.35
SCN8A-202ENST00000355133 GOLGA6L22H0YM25 854 aa17.23■□□□□ 0.35
SCN8A-202ENST00000355133 CC2D1BQ5T0F9 858 aaKnown RBP17.23■□□□□ 0.35
SCN8A-202ENST00000355133 CASC1Q6TDU7 716 aa17.23■□□□□ 0.35
SCN8A-202ENST00000355133 NUDCQ9Y266 331 aa17.22■□□□□ 0.35
SCN8A-202ENST00000355133 GLIPR1L2Q4G1C9 344 aa17.22■□□□□ 0.35
SCN8A-202ENST00000355133 ERCC6Q03468 1493 aa17.21■□□□□ 0.35
SCN8A-202ENST00000355133 FRAT1Q92837 279 aaPredicted RBP17.21■□□□□ 0.35
SCN8A-202ENST00000355133 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.34
SCN8A-202ENST00000355133 TULP1O00294 542 aaPredicted RBP17.2■□□□□ 0.34
SCN8A-202ENST00000355133 TAOK2Q9UL54 1235 aa17.2■□□□□ 0.34
SCN8A-202ENST00000355133 U2SURPO15042 1029 aaKnown RBP17.19■□□□□ 0.34
SCN8A-202ENST00000355133 TRIM44Q96DX7 344 aaPredicted RBP17.19■□□□□ 0.34
SCN8A-202ENST00000355133 NPHP1O15259 732 aa17.18■□□□□ 0.34
SCN8A-202ENST00000355133 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
SCN8A-202ENST00000355133 ZRSR1Q15695 479 aaKnown RBP17.18■□□□□ 0.34
SCN8A-202ENST00000355133 MLECQ14165 292 aa17.16■□□□□ 0.34
SCN8A-202ENST00000355133 RGS3P49796 1198 aa17.16■□□□□ 0.34
SCN8A-202ENST00000355133 CEP164Q9UPV0 1460 aa17.14■□□□□ 0.33
SCN8A-202ENST00000355133 SOX12O15370 315 aa17.14■□□□□ 0.33
SCN8A-202ENST00000355133 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
SCN8A-202ENST00000355133 TNIKQ9UKE5 1360 aa17.13■□□□□ 0.33
SCN8A-202ENST00000355133 OS9Q13438 667 aaPredicted RBP17.13■□□□□ 0.33
SCN8A-202ENST00000355133 PTMAP06454 111 aaKnown RBP17.13■□□□□ 0.33
SCN8A-202ENST00000355133 DCAF11Q8TEB1 546 aa17.12■□□□□ 0.33
SCN8A-202ENST00000355133 TRHP20396 242 aaPredicted RBP17.12■□□□□ 0.33
SCN8A-202ENST00000355133 ANP32EQ9BTT0 268 aa17.11■□□□□ 0.33
SCN8A-202ENST00000355133 SAFB2Q14151 953 aaKnown RBP eCLIP17.1■□□□□ 0.33
SCN8A-202ENST00000355133 EIF4G1Q04637 1599 aaKnown RBP17.1■□□□□ 0.33
SCN8A-202ENST00000355133 TMF1P82094 1093 aa17.07■□□□□ 0.32
SCN8A-202ENST00000355133 SRPK2P78362 688 aaKnown RBP17.07■□□□□ 0.32
SCN8A-202ENST00000355133 KANK1Q14678 1352 aa17.06■□□□□ 0.32
SCN8A-202ENST00000355133 FGD1P98174 961 aa17.05■□□□□ 0.32
SCN8A-202ENST00000355133 NAP1L2Q9ULW6 460 aaPredicted RBP17.05■□□□□ 0.32
SCN8A-202ENST00000355133 KCNJ4P48050 445 aa17.04■□□□□ 0.32
SCN8A-202ENST00000355133 PPP4R2Q9NY27 417 aa17.04■□□□□ 0.32
SCN8A-202ENST00000355133 PLCB2Q00722 1185 aa17.03■□□□□ 0.32
SCN8A-202ENST00000355133 DNTTIP2Q5QJE6 756 aaKnown RBP17.03■□□□□ 0.32
SCN8A-202ENST00000355133 PNNQ9H307 717 aaKnown RBP17.03■□□□□ 0.32
SCN8A-202ENST00000355133 GOLGA2Q08379 1002 aa17.02■□□□□ 0.32
SCN8A-202ENST00000355133 CHMP4BQ9H444 224 aaKnown RBP17.02■□□□□ 0.32
SCN8A-202ENST00000355133 HSP90AB1P08238 724 aaKnown RBP17.01■□□□□ 0.31
SCN8A-202ENST00000355133 GGT6Q6P531 493 aa17.01■□□□□ 0.31
SCN8A-202ENST00000355133 MORC1Q86VD1 984 aa17.01■□□□□ 0.31
SCN8A-202ENST00000355133 STK26Q9P289 416 aa17.01■□□□□ 0.31
SCN8A-202ENST00000355133 MS4A1P11836 297 aa17■□□□□ 0.31
SCN8A-202ENST00000355133 HDGFP51858 240 aaKnown RBP17■□□□□ 0.31
SCN8A-202ENST00000355133 CARMIL1Q5VZK9 1371 aa16.99■□□□□ 0.31
SCN8A-202ENST00000355133 B4GALNT3Q6L9W6 998 aa16.99■□□□□ 0.31
SCN8A-202ENST00000355133 NACADO15069 1562 aa16.98■□□□□ 0.31
SCN8A-202ENST00000355133 FHAD1B1AJZ9 1412 aa16.97■□□□□ 0.31
SCN8A-202ENST00000355133 CUX2O14529 1486 aa16.97■□□□□ 0.31
SCN8A-202ENST00000355133 FOXD1Q16676 465 aa16.95■□□□□ 0.3
SCN8A-202ENST00000355133 RTF1Q92541 710 aaKnown RBP16.93■□□□□ 0.3
SCN8A-202ENST00000355133 PKD2Q13563 968 aa16.92■□□□□ 0.3
SCN8A-202ENST00000355133 HSPA5P11021 654 aaKnown RBP16.92■□□□□ 0.3
SCN8A-202ENST00000355133 PAK3O75914 559 aaPredicted RBP16.91■□□□□ 0.3
SCN8A-202ENST00000355133 APBB1O00213 710 aa16.9■□□□□ 0.3
SCN8A-202ENST00000355133 SOGA1O94964 1423 aa16.9■□□□□ 0.3
SCN8A-202ENST00000355133 NOP58Q9Y2X3 529 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms