RNA–Protein interactions for RNA: ENST00000353414.8

COL11A1-201, Transcript of collagen type XI alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL11A1, Length 7,173 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-201ENST00000353414 AMER1Q5JTC6 1135 aaPredicted RBP13.43□□□□□ -0.26
COL11A1-201ENST00000353414 AEBP2Q6ZN18 517 aaPredicted RBP13.42□□□□□ -0.26
COL11A1-201ENST00000353414 WDR43Q15061 677 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL11A1-201ENST00000353414 ERCC6Q03468 1493 aa13.41□□□□□ -0.26
COL11A1-201ENST00000353414 KCNH8Q96L42 1107 aa13.4□□□□□ -0.26
COL11A1-201ENST00000353414 PPP1R15AO75807 674 aaPredicted RBP13.39□□□□□ -0.27
COL11A1-201ENST00000353414 TMC1Q8TDI8 760 aa13.39□□□□□ -0.27
COL11A1-201ENST00000353414 LAS1LQ9Y4W2 734 aaKnown RBP13.37□□□□□ -0.27
COL11A1-201ENST00000353414 TONSLQ96HA7 1378 aa13.36□□□□□ -0.27
COL11A1-201ENST00000353414 NCLP19338 710 aaKnown RBP13.35□□□□□ -0.27
COL11A1-201ENST00000353414 CCDC136Q96JN2 1154 aa13.35□□□□□ -0.27
COL11A1-201ENST00000353414 MYH16Q9H6N6 1097 aa13.34□□□□□ -0.27
COL11A1-201ENST00000353414 CLSTN1O94985 981 aa13.33□□□□□ -0.28
COL11A1-201ENST00000353414 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.31□□□□□ -0.28
COL11A1-201ENST00000353414 RGL3Q3MIN7 710 aa13.3□□□□□ -0.28
COL11A1-201ENST00000353414 SOX12O15370 315 aa13.29□□□□□ -0.28
COL11A1-201ENST00000353414 NAP1L2Q9ULW6 460 aaPredicted RBP13.28□□□□□ -0.28
COL11A1-201ENST00000353414 TNNT2P45379 298 aaPredicted RBP13.28□□□□□ -0.28
COL11A1-201ENST00000353414 CHMP7Q8WUX9 453 aaPredicted RBP13.27□□□□□ -0.28
COL11A1-201ENST00000353414 NEUROD2Q15784 382 aa13.27□□□□□ -0.29
COL11A1-201ENST00000353414 ISY1Q9ULR0 285 aaKnown RBP13.25□□□□□ -0.29
COL11A1-201ENST00000353414 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.24□□□□□ -0.29
COL11A1-201ENST00000353414 MRS2Q9HD23 443 aa13.23□□□□□ -0.29
COL11A1-201ENST00000353414 PLCB2Q00722 1185 aa13.23□□□□□ -0.29
COL11A1-201ENST00000353414 ACIN1Q9UKV3 1341 aaKnown RBP13.23□□□□□ -0.29
COL11A1-201ENST00000353414 RRP7BPQ9NSQ0 103 aa13.23□□□□□ -0.29
COL11A1-201ENST00000353414 ANO8Q9HCE9 1232 aaPredicted RBP13.22□□□□□ -0.29
COL11A1-201ENST00000353414 MLECQ14165 292 aa13.19□□□□□ -0.3
COL11A1-201ENST00000353414 ZRSR1Q15695 479 aaKnown RBP13.18□□□□□ -0.3
COL11A1-201ENST00000353414 RTN4Q9NQC3 1192 aaKnown RBP13.18□□□□□ -0.3
COL11A1-201ENST00000353414 DNTTIP2Q5QJE6 756 aaKnown RBP13.17□□□□□ -0.3
COL11A1-201ENST00000353414 PTMAP06454 111 aaKnown RBP13.17□□□□□ -0.3
COL11A1-201ENST00000353414 TSPY4P0CV99 314 aa13.16□□□□□ -0.3
COL11A1-201ENST00000353414 TSPY10P0CW01 314 aa13.16□□□□□ -0.3
COL11A1-201ENST00000353414 GOLGA2Q08379 1002 aa13.16□□□□□ -0.3
COL11A1-201ENST00000353414 CSRNP3Q8WYN3 585 aa13.15□□□□□ -0.3
COL11A1-201ENST00000353414 OS9Q13438 667 aaPredicted RBP13.14□□□□□ -0.31
COL11A1-201ENST00000353414 RB1CC1Q8TDY2 1594 aa13.14□□□□□ -0.31
COL11A1-201ENST00000353414 TRIM44Q96DX7 344 aaPredicted RBP13.13□□□□□ -0.31
COL11A1-201ENST00000353414 PDE4CQ08493 712 aa13.13□□□□□ -0.31
COL11A1-201ENST00000353414 FTSJ3Q8IY81 847 aaKnown RBP13.12□□□□□ -0.31
COL11A1-201ENST00000353414 PRM3Q9NNZ6 103 aa13.11□□□□□ -0.31
COL11A1-201ENST00000353414 ZNF330Q9Y3S2 320 aaPredicted RBP13.11□□□□□ -0.31
COL11A1-201ENST00000353414 FGD1P98174 961 aa13.1□□□□□ -0.31
COL11A1-201ENST00000353414 SAFB2Q14151 953 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL11A1-201ENST00000353414 SPRYD3Q8NCJ5 442 aa13.09□□□□□ -0.31
COL11A1-201ENST00000353414 FRAT1Q92837 279 aaPredicted RBP13.09□□□□□ -0.31
COL11A1-201ENST00000353414 ERICH6BQ5W0A0 696 aa13.07□□□□□ -0.32
COL11A1-201ENST00000353414 CC2D1BQ5T0F9 858 aaKnown RBP13.06□□□□□ -0.32
COL11A1-201ENST00000353414 POGKQ9P215 609 aa13.06□□□□□ -0.32
COL11A1-201ENST00000353414 U2SURPO15042 1029 aaKnown RBP13.06□□□□□ -0.32
COL11A1-201ENST00000353414 KCNJ4P48050 445 aa13.06□□□□□ -0.32
COL11A1-201ENST00000353414 CASC1Q6TDU7 716 aa13.05□□□□□ -0.32
COL11A1-201ENST00000353414 RGS3P49796 1198 aa13.04□□□□□ -0.32
COL11A1-201ENST00000353414 CCDC9Q9Y3X0 531 aaKnown RBP13.04□□□□□ -0.32
COL11A1-201ENST00000353414 NAP1L5Q96NT1 182 aaPredicted RBP13.03□□□□□ -0.32
COL11A1-201ENST00000353414 APBB1O00213 710 aa13.03□□□□□ -0.32
COL11A1-201ENST00000353414 MTUS2Q5JR59 1369 aa13.03□□□□□ -0.32
COL11A1-201ENST00000353414 BECN1Q14457 450 aa13.02□□□□□ -0.32
COL11A1-201ENST00000353414 PAK3O75914 559 aaPredicted RBP13□□□□□ -0.33
COL11A1-201ENST00000353414 GOLGA6L22H0YM25 854 aa13□□□□□ -0.33
COL11A1-201ENST00000353414 MIER1Q8N108 512 aa13□□□□□ -0.33
COL11A1-201ENST00000353414 FBXO3Q9UK99 471 aa12.99□□□□□ -0.33
COL11A1-201ENST00000353414 MAPK8IP3Q9UPT6 1336 aa12.99□□□□□ -0.33
COL11A1-201ENST00000353414 KNSTRNQ9Y448 316 aa12.99□□□□□ -0.33
COL11A1-201ENST00000353414 CFAP53Q96M91 514 aa12.98□□□□□ -0.33
COL11A1-201ENST00000353414 ARID3AQ99856 593 aa12.98□□□□□ -0.33
COL11A1-201ENST00000353414 HSP90AB1P08238 724 aaKnown RBP12.97□□□□□ -0.33
COL11A1-201ENST00000353414 STK26Q9P289 416 aa12.97□□□□□ -0.33
COL11A1-201ENST00000353414 EIF4G2P78344 907 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL11A1-201ENST00000353414 SUPT16HQ9Y5B9 1047 aaKnown RBP12.95□□□□□ -0.34
COL11A1-201ENST00000353414 DRC7Q8IY82 874 aa12.92□□□□□ -0.34
COL11A1-201ENST00000353414 CARD11Q9BXL7 1154 aa12.92□□□□□ -0.34
COL11A1-201ENST00000353414 DDRGK1Q96HY6 314 aa12.91□□□□□ -0.34
COL11A1-201ENST00000353414 GNL2Q13823 731 aaKnown RBP12.91□□□□□ -0.34
COL11A1-201ENST00000353414 WWC1Q8IX03 1113 aa12.9□□□□□ -0.34
COL11A1-201ENST00000353414 PLEKHD1A6NEE1 506 aa12.9□□□□□ -0.34
COL11A1-201ENST00000353414 SRPK2P78362 688 aaKnown RBP12.9□□□□□ -0.34
COL11A1-201ENST00000353414 CSB-PGBD3P0DP91 1061 aa12.9□□□□□ -0.34
COL11A1-201ENST00000353414 CHMP3Q9Y3E7 222 aa12.89□□□□□ -0.35
COL11A1-201ENST00000353414 CCDC180Q9P1Z9 1646 aa12.89□□□□□ -0.35
COL11A1-201ENST00000353414 CREBRFQ8IUR6 639 aa12.88□□□□□ -0.35
COL11A1-201ENST00000353414 GOLGA6L4A6NEF3 574 aa12.87□□□□□ -0.35
COL11A1-201ENST00000353414 G3V3G9 751 aa12.87□□□□□ -0.35
COL11A1-201ENST00000353414 DCAF8Q5TAQ9 597 aa12.87□□□□□ -0.35
COL11A1-201ENST00000353414 B4GALNT3Q6L9W6 998 aa12.85□□□□□ -0.35
COL11A1-201ENST00000353414 NUTM2DQ5VT03 806 aaPredicted RBP12.84□□□□□ -0.35
COL11A1-201ENST00000353414 NUDCQ9Y266 331 aa12.84□□□□□ -0.35
COL11A1-201ENST00000353414 GOLGA6L6A8MZA4 724 aa12.84□□□□□ -0.35
COL11A1-201ENST00000353414 NUTM2FA1L443 756 aa12.83□□□□□ -0.36
COL11A1-201ENST00000353414 CFDP1Q9UEE9 299 aaPredicted RBP12.83□□□□□ -0.36
COL11A1-201ENST00000353414 VPS53Q5VIR6 699 aa12.83□□□□□ -0.36
COL11A1-201ENST00000353414 NOC3LQ8WTT2 800 aaKnown RBP12.83□□□□□ -0.36
COL11A1-201ENST00000353414 MSH5O43196 834 aa12.82□□□□□ -0.36
COL11A1-201ENST00000353414 PHF23Q9BUL5 403 aaPredicted RBP12.82□□□□□ -0.36
COL11A1-201ENST00000353414 HSP90B1P14625 803 aaKnown RBP12.81□□□□□ -0.36
COL11A1-201ENST00000353414 KLHL34Q8N239 644 aa12.81□□□□□ -0.36
COL11A1-201ENST00000353414 RTF1Q92541 710 aaKnown RBP12.81□□□□□ -0.36
COL11A1-201ENST00000353414 TMX4Q9H1E5 349 aaPredicted RBP12.81□□□□□ -0.36
COL11A1-201ENST00000353414 GGT6Q6P531 493 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms