RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 MYH16Q9H6N6 1097 aa20.01■□□□□ 0.79
UBE3B-202ENST00000342494 CCDC136Q96JN2 1154 aa19.98■□□□□ 0.79
UBE3B-202ENST00000342494 RGL3Q3MIN7 710 aa19.96■□□□□ 0.79
UBE3B-202ENST00000342494 CLIP1P30622 1438 aa19.96■□□□□ 0.79
UBE3B-202ENST00000342494 RSF1Q96T23 1441 aaPredicted RBP19.95■□□□□ 0.78
UBE3B-202ENST00000342494 EIF4G2P78344 907 aaKnown RBP eCLIP19.93■□□□□ 0.78
UBE3B-202ENST00000342494 CFDP1Q9UEE9 299 aaPredicted RBP19.91■□□□□ 0.78
UBE3B-202ENST00000342494 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
UBE3B-202ENST00000342494 ARXQ96QS3 562 aa19.9■□□□□ 0.78
UBE3B-202ENST00000342494 HIRIP3Q9BW71 556 aaPredicted RBP19.89■□□□□ 0.77
UBE3B-202ENST00000342494 ERCC6Q03468 1493 aa19.87■□□□□ 0.77
UBE3B-202ENST00000342494 CFAP53Q96M91 514 aa19.86■□□□□ 0.77
UBE3B-202ENST00000342494 PPM1GO15355 546 aaPredicted RBP19.85■□□□□ 0.77
UBE3B-202ENST00000342494 LMOD2Q6P5Q4 547 aa19.85■□□□□ 0.77
UBE3B-202ENST00000342494 CDCA8Q53HL2 280 aa19.83■□□□□ 0.77
UBE3B-202ENST00000342494 TRHP20396 242 aaPredicted RBP19.82■□□□□ 0.76
UBE3B-202ENST00000342494 CDK11BP21127 795 aaKnown RBP19.82■□□□□ 0.76
UBE3B-202ENST00000342494 POGKQ9P215 609 aa19.79■□□□□ 0.76
UBE3B-202ENST00000342494 KNSTRNQ9Y448 316 aa19.79■□□□□ 0.76
UBE3B-202ENST00000342494 BAZ1BQ9UIG0 1483 aaKnown RBP19.78■□□□□ 0.76
UBE3B-202ENST00000342494 DCAF1Q9Y4B6 1507 aa19.77■□□□□ 0.76
UBE3B-202ENST00000342494 GOLGA3Q08378 1498 aa19.74■□□□□ 0.75
UBE3B-202ENST00000342494 KIF27Q86VH2 1401 aa19.74■□□□□ 0.75
UBE3B-202ENST00000342494 EEA1Q15075 1411 aa19.73■□□□□ 0.75
UBE3B-202ENST00000342494 CARD11Q9BXL7 1154 aa19.73■□□□□ 0.75
UBE3B-202ENST00000342494 WRNQ14191 1432 aaPredicted RBP eCLIP19.72■□□□□ 0.75
UBE3B-202ENST00000342494 NPHP1O15259 732 aa19.72■□□□□ 0.75
UBE3B-202ENST00000342494 IRX6P78412 446 aaPredicted RBP19.71■□□□□ 0.75
UBE3B-202ENST00000342494 CCDC180Q9P1Z9 1646 aa19.71■□□□□ 0.75
UBE3B-202ENST00000342494 MAPK8IP3Q9UPT6 1336 aa19.69■□□□□ 0.74
UBE3B-202ENST00000342494 NUDCQ9Y266 331 aa19.67■□□□□ 0.74
UBE3B-202ENST00000342494 MLECQ14165 292 aa19.66■□□□□ 0.74
UBE3B-202ENST00000342494 LAS1LQ9Y4W2 734 aaKnown RBP19.66■□□□□ 0.74
UBE3B-202ENST00000342494 EIF5BO60841 1220 aaKnown RBP19.65■□□□□ 0.74
UBE3B-202ENST00000342494 NEUROD2Q15784 382 aa19.65■□□□□ 0.74
UBE3B-202ENST00000342494 CEP162Q5TB80 1403 aa19.64■□□□□ 0.73
UBE3B-202ENST00000342494 NCLP19338 710 aaKnown RBP19.63■□□□□ 0.73
UBE3B-202ENST00000342494 FTSJ3Q8IY81 847 aaKnown RBP19.63■□□□□ 0.73
UBE3B-202ENST00000342494 HDGFP51858 240 aaKnown RBP19.61■□□□□ 0.73
UBE3B-202ENST00000342494 NBR1Q14596 966 aa19.61■□□□□ 0.73
UBE3B-202ENST00000342494 SENP3-EIF4A1A0A087X0R7 540 aa19.6■□□□□ 0.73
UBE3B-202ENST00000342494 MIER1Q8N108 512 aa19.59■□□□□ 0.73
UBE3B-202ENST00000342494 TNNT2P45379 298 aaPredicted RBP19.59■□□□□ 0.73
UBE3B-202ENST00000342494 BECN1Q14457 450 aa19.59■□□□□ 0.73
UBE3B-202ENST00000342494 CASC1Q6TDU7 716 aa19.58■□□□□ 0.73
UBE3B-202ENST00000342494 CCNB3Q8WWL7 1395 aa19.58■□□□□ 0.73
UBE3B-202ENST00000342494 KANK1Q14678 1352 aa19.57■□□□□ 0.72
UBE3B-202ENST00000342494 NACADO15069 1562 aa19.56■□□□□ 0.72
UBE3B-202ENST00000342494 U2SURPO15042 1029 aaKnown RBP19.54■□□□□ 0.72
UBE3B-202ENST00000342494 ZRSR1Q15695 479 aaKnown RBP19.53■□□□□ 0.72
UBE3B-202ENST00000342494 GOLGA6L22H0YM25 854 aa19.52■□□□□ 0.72
UBE3B-202ENST00000342494 CEP164Q9UPV0 1460 aa19.52■□□□□ 0.72
UBE3B-202ENST00000342494 TULP1O00294 542 aaPredicted RBP19.51■□□□□ 0.71
UBE3B-202ENST00000342494 SOX12O15370 315 aa19.5■□□□□ 0.71
UBE3B-202ENST00000342494 OS9Q13438 667 aaPredicted RBP19.5■□□□□ 0.71
UBE3B-202ENST00000342494 DDRGK1Q96HY6 314 aa19.49■□□□□ 0.71
UBE3B-202ENST00000342494 EIF4G1Q04637 1599 aaKnown RBP19.49■□□□□ 0.71
UBE3B-202ENST00000342494 SRPK2P78362 688 aaKnown RBP19.48■□□□□ 0.71
UBE3B-202ENST00000342494 PNNQ9H307 717 aaKnown RBP19.48■□□□□ 0.71
UBE3B-202ENST00000342494 CC2D1BQ5T0F9 858 aaKnown RBP19.47■□□□□ 0.71
UBE3B-202ENST00000342494 GOLGA2Q08379 1002 aa19.47■□□□□ 0.71
UBE3B-202ENST00000342494 GGT6Q6P531 493 aa19.47■□□□□ 0.71
UBE3B-202ENST00000342494 FRAT1Q92837 279 aaPredicted RBP19.46■□□□□ 0.71
UBE3B-202ENST00000342494 DCAF11Q8TEB1 546 aa19.46■□□□□ 0.71
UBE3B-202ENST00000342494 TNIKQ9UKE5 1360 aa19.46■□□□□ 0.71
UBE3B-202ENST00000342494 CHMP4BQ9H444 224 aaKnown RBP19.45■□□□□ 0.7
UBE3B-202ENST00000342494 TMF1P82094 1093 aa19.45■□□□□ 0.7
UBE3B-202ENST00000342494 SAFB2Q14151 953 aaKnown RBP eCLIP19.44■□□□□ 0.7
UBE3B-202ENST00000342494 SIN3AQ96ST3 1273 aa19.43■□□□□ 0.7
UBE3B-202ENST00000342494 TAOK2Q9UL54 1235 aa19.43■□□□□ 0.7
UBE3B-202ENST00000342494 FHAD1B1AJZ9 1412 aa19.42■□□□□ 0.7
UBE3B-202ENST00000342494 CARMIL1Q5VZK9 1371 aa19.42■□□□□ 0.7
UBE3B-202ENST00000342494 TPRNQ4KMQ1 711 aa19.41■□□□□ 0.7
UBE3B-202ENST00000342494 FGD1P98174 961 aa19.4■□□□□ 0.7
UBE3B-202ENST00000342494 ANP32EQ9BTT0 268 aa19.4■□□□□ 0.7
UBE3B-202ENST00000342494 CUX2O14529 1486 aa19.39■□□□□ 0.69
UBE3B-202ENST00000342494 MS4A1P11836 297 aa19.39■□□□□ 0.69
UBE3B-202ENST00000342494 KCNJ4P48050 445 aa19.37■□□□□ 0.69
UBE3B-202ENST00000342494 TRIM44Q96DX7 344 aaPredicted RBP19.37■□□□□ 0.69
UBE3B-202ENST00000342494 STK26Q9P289 416 aa19.37■□□□□ 0.69
UBE3B-202ENST00000342494 MORC1Q86VD1 984 aa19.35■□□□□ 0.69
UBE3B-202ENST00000342494 NAP1L2Q9ULW6 460 aaPredicted RBP19.33■□□□□ 0.69
UBE3B-202ENST00000342494 SUPT16HQ9Y5B9 1047 aaKnown RBP19.33■□□□□ 0.69
UBE3B-202ENST00000342494 RGS3P49796 1198 aa19.33■□□□□ 0.69
UBE3B-202ENST00000342494 RTF1Q92541 710 aaKnown RBP19.33■□□□□ 0.68
UBE3B-202ENST00000342494 CARMIL2Q6F5E8 1435 aa19.33■□□□□ 0.68
UBE3B-202ENST00000342494 BAZ1AQ9NRL2 1556 aaPredicted RBP19.33■□□□□ 0.68
UBE3B-202ENST00000342494 PAK3O75914 559 aaPredicted RBP19.32■□□□□ 0.68
UBE3B-202ENST00000342494 PTMAP06454 111 aaKnown RBP19.32■□□□□ 0.68
UBE3B-202ENST00000342494 HDGFL2Q7Z4V5 671 aaPredicted RBP19.31■□□□□ 0.68
UBE3B-202ENST00000342494 CSB-PGBD3P0DP91 1061 aa19.31■□□□□ 0.68
UBE3B-202ENST00000342494 GLIPR1L2Q4G1C9 344 aa19.3■□□□□ 0.68
UBE3B-202ENST00000342494 EFCAB2Q5VUJ9 269 aa19.27■□□□□ 0.68
UBE3B-202ENST00000342494 PKD2Q13563 968 aa19.25■□□□□ 0.67
UBE3B-202ENST00000342494 PDS5BQ9NTI5 1447 aa19.25■□□□□ 0.67
UBE3B-202ENST00000342494 ISY1Q9ULR0 285 aaKnown RBP19.24■□□□□ 0.67
UBE3B-202ENST00000342494 ZNF330Q9Y3S2 320 aaPredicted RBP19.23■□□□□ 0.67
UBE3B-202ENST00000342494 CCDC9Q9Y3X0 531 aaKnown RBP19.23■□□□□ 0.67
UBE3B-202ENST00000342494 HSP90AB1P08238 724 aaKnown RBP19.21■□□□□ 0.67
UBE3B-202ENST00000342494 PLCB2Q00722 1185 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms