RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 PLCB2Q00722 1185 aa17.04■□□□□ 0.32
USP47-202ENST00000339865 DDRGK1Q96HY6 314 aa17.03■□□□□ 0.32
USP47-202ENST00000339865 MYH16Q9H6N6 1097 aa17.02■□□□□ 0.31
USP47-202ENST00000339865 ARID4BQ4LE39 1312 aaPredicted RBP17.01■□□□□ 0.31
USP47-202ENST00000339865 ARID3CA6NKF2 412 aa16.97■□□□□ 0.31
USP47-202ENST00000339865 CLSTN1O94985 981 aa16.97■□□□□ 0.31
USP47-202ENST00000339865 TMC1Q8TDI8 760 aa16.97■□□□□ 0.31
USP47-202ENST00000339865 TAOK2Q9UL54 1235 aa16.96■□□□□ 0.31
USP47-202ENST00000339865 DDX10Q13206 875 aaKnown RBP16.91■□□□□ 0.3
USP47-202ENST00000339865 CHAF1AQ13111 956 aaPredicted RBP16.91■□□□□ 0.3
USP47-202ENST00000339865 ARID3AQ99856 593 aa16.9■□□□□ 0.3
USP47-202ENST00000339865 TNNT3P45378 269 aaPredicted RBP16.9■□□□□ 0.3
USP47-202ENST00000339865 WDR43Q15061 677 aaKnown RBP eCLIP16.88■□□□□ 0.296e-6■■■□□ 14.9
USP47-202ENST00000339865 GOLGA6L6A8MZA4 724 aa16.88■□□□□ 0.29
USP47-202ENST00000339865 LAS1LQ9Y4W2 734 aaKnown RBP16.86■□□□□ 0.29
USP47-202ENST00000339865 MSNP26038 577 aaKnown RBP16.84■□□□□ 0.29
USP47-202ENST00000339865 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.83■□□□□ 0.28
USP47-202ENST00000339865 NRDCO43847 1150 aa16.82■□□□□ 0.28
USP47-202ENST00000339865 CASC1Q6TDU7 716 aa16.79■□□□□ 0.28
USP47-202ENST00000339865 PPM1GO15355 546 aaPredicted RBP16.77■□□□□ 0.27
USP47-202ENST00000339865 TONSLQ96HA7 1378 aa16.76■□□□□ 0.27
USP47-202ENST00000339865 DRC7Q8IY82 874 aa16.76■□□□□ 0.27
USP47-202ENST00000339865 NPM1P06748 294 aaKnown RBP eCLIP16.75■□□□□ 0.27
USP47-202ENST00000339865 ZNF777Q9ULD5 760 aaPredicted RBP16.74■□□□□ 0.27
USP47-202ENST00000339865 MRS2Q9HD23 443 aa16.73■□□□□ 0.27
USP47-202ENST00000339865 NOC3LQ8WTT2 800 aaKnown RBP16.72■□□□□ 0.27
USP47-202ENST00000339865 HSP90AB1P08238 724 aaKnown RBP16.71■□□□□ 0.27
USP47-202ENST00000339865 ISY1Q9ULR0 285 aaKnown RBP16.71■□□□□ 0.27
USP47-202ENST00000339865 LMOD2Q6P5Q4 547 aa16.69■□□□□ 0.26
USP47-202ENST00000339865 CALRP27797 417 aaKnown RBP16.69■□□□□ 0.26
USP47-202ENST00000339865 NAP1L2Q9ULW6 460 aaPredicted RBP16.68■□□□□ 0.26
USP47-202ENST00000339865 NOP58Q9Y2X3 529 aaKnown RBP16.68■□□□□ 0.26
USP47-202ENST00000339865 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
USP47-202ENST00000339865 FGD1P98174 961 aa16.66■□□□□ 0.26
USP47-202ENST00000339865 L1TD1Q5T7N2 865 aaKnown RBP16.66■□□□□ 0.26
USP47-202ENST00000339865 DEKP35659 375 aaKnown RBP16.65■□□□□ 0.26
USP47-202ENST00000339865 AEBP2Q6ZN18 517 aaPredicted RBP16.64■□□□□ 0.25
USP47-202ENST00000339865 PNNQ9H307 717 aaKnown RBP16.64■□□□□ 0.25
USP47-202ENST00000339865 GOLGA6L4A6NEF3 574 aa16.64■□□□□ 0.25
USP47-202ENST00000339865 FTSJ3Q8IY81 847 aaKnown RBP16.63■□□□□ 0.25
USP47-202ENST00000339865 FBXO3Q9UK99 471 aa16.62■□□□□ 0.25
USP47-202ENST00000339865 SENP3-EIF4A1A0A087X0R7 540 aa16.62■□□□□ 0.25
USP47-202ENST00000339865 P3H3Q8IVL6 736 aa16.61■□□□□ 0.25
USP47-202ENST00000339865 KIAA2012Q0VF49 1180 aa16.6■□□□□ 0.25
USP47-202ENST00000339865 A0A0U1RQG5 324 aaPredicted RBP16.6■□□□□ 0.25
USP47-202ENST00000339865 ANO8Q9HCE9 1232 aaPredicted RBP16.59■□□□□ 0.25
USP47-202ENST00000339865 KCNJ4P48050 445 aa16.57■□□□□ 0.24
USP47-202ENST00000339865 PHF23Q9BUL5 403 aaPredicted RBP16.57■□□□□ 0.24
USP47-202ENST00000339865 GOLGA6L1Q8N7Z2 621 aa16.57■□□□□ 0.24
USP47-202ENST00000339865 SPRYD3Q8NCJ5 442 aa16.57■□□□□ 0.24
USP47-202ENST00000339865 RGS3P49796 1198 aa16.56■□□□□ 0.24
USP47-202ENST00000339865 KDM2AQ9Y2K7 1162 aa16.55■□□□□ 0.24
USP47-202ENST00000339865 SUPT16HQ9Y5B9 1047 aaKnown RBP16.55■□□□□ 0.24
USP47-202ENST00000339865 HIRIP3Q9BW71 556 aaPredicted RBP16.55■□□□□ 0.24
USP47-202ENST00000339865 MIER1Q8N108 512 aa16.55■□□□□ 0.24
USP47-202ENST00000339865 GOLGA2Q08379 1002 aa16.53■□□□□ 0.24
USP47-202ENST00000339865 PDE4CQ08493 712 aa16.53■□□□□ 0.24
USP47-202ENST00000339865 SETQ01105 290 aaPredicted RBP16.5■□□□□ 0.23
USP47-202ENST00000339865 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.49■□□□□ 0.238e-7■□□□□ 9
USP47-202ENST00000339865 HSCBQ8IWL3 235 aa16.49■□□□□ 0.23
USP47-202ENST00000339865 GZF1Q9H116 711 aaPredicted RBP16.48■□□□□ 0.23
USP47-202ENST00000339865 PPP1R15AO75807 674 aaPredicted RBP16.46■□□□□ 0.23
USP47-202ENST00000339865 PTMSP20962 102 aa16.45■□□□□ 0.22
USP47-202ENST00000339865 OS9Q13438 667 aaPredicted RBP16.45■□□□□ 0.22
USP47-202ENST00000339865 PATL2C9JE40 543 aaKnown RBP16.44■□□□□ 0.22
USP47-202ENST00000339865 DCAF8L1A6NGE4 600 aa16.44■□□□□ 0.22
USP47-202ENST00000339865 HSP90AA2PQ14568 343 aaPredicted RBP16.43■□□□□ 0.22
USP47-202ENST00000339865 GNL2Q13823 731 aaKnown RBP16.43■□□□□ 0.22
USP47-202ENST00000339865 CNKSR2Q8WXI2 1034 aa16.41■□□□□ 0.22
USP47-202ENST00000339865 CCDC9Q9Y3X0 531 aaKnown RBP16.4■□□□□ 0.22
USP47-202ENST00000339865 FRAT1Q92837 279 aaPredicted RBP16.4■□□□□ 0.22
USP47-202ENST00000339865 VSIG10Q8N0Z9 540 aa16.38■□□□□ 0.21
USP47-202ENST00000339865 NEUROD2Q15784 382 aa16.38■□□□□ 0.21
USP47-202ENST00000339865 B4GALNT3Q6L9W6 998 aa16.37■□□□□ 0.21
USP47-202ENST00000339865 KLHL34Q8N239 644 aa16.35■□□□□ 0.21
USP47-202ENST00000339865 PABPN1Q86U42 306 aaKnown RBP eCLIP16.35■□□□□ 0.21
USP47-202ENST00000339865 TMX4Q9H1E5 349 aaPredicted RBP16.34■□□□□ 0.21
USP47-202ENST00000339865 MCCP23508 829 aa16.33■□□□□ 0.21
USP47-202ENST00000339865 USP35Q9P2H5 1018 aa16.33■□□□□ 0.21
USP47-202ENST00000339865 PPP4R2Q9NY27 417 aa16.33■□□□□ 0.2
USP47-202ENST00000339865 CHIC2Q9UKJ5 165 aa16.33■□□□□ 0.2
USP47-202ENST00000339865 CREBRFQ8IUR6 639 aa16.3■□□□□ 0.2
USP47-202ENST00000339865 G3V3G9 751 aa16.3■□□□□ 0.2
USP47-202ENST00000339865 DCAF8Q5TAQ9 597 aa16.3■□□□□ 0.2
USP47-202ENST00000339865 TAF7LQ5H9L4 462 aa16.3■□□□□ 0.2
USP47-202ENST00000339865 EIF4G2P78344 907 aaKnown RBP eCLIP16.29■□□□□ 0.22e-7■■■■□ 23
USP47-202ENST00000339865 GBP4Q96PP9 640 aa16.29■□□□□ 0.2
USP47-202ENST00000339865 CFAP53Q96M91 514 aa16.29■□□□□ 0.2
USP47-202ENST00000339865 ZNF771Q7L3S4 317 aaPredicted RBP16.29■□□□□ 0.2
USP47-202ENST00000339865 TPM4P67936 248 aa16.28■□□□□ 0.2
USP47-202ENST00000339865 WWC1Q8IX03 1113 aa16.27■□□□□ 0.2
USP47-202ENST00000339865 APPP05067 770 aa16.26■□□□□ 0.19
USP47-202ENST00000339865 SYAP1Q96A49 352 aaPredicted RBP16.26■□□□□ 0.19
USP47-202ENST00000339865 SLKQ9H2G2 1235 aaPredicted RBP16.25■□□□□ 0.19
USP47-202ENST00000339865 RRP12Q5JTH9 1297 aaKnown RBP16.24■□□□□ 0.19
USP47-202ENST00000339865 CEP89Q96ST8 783 aa16.24■□□□□ 0.19
USP47-202ENST00000339865 KNSTRNQ9Y448 316 aa16.23■□□□□ 0.19
USP47-202ENST00000339865 MAPK8IP3Q9UPT6 1336 aa16.23■□□□□ 0.19
USP47-202ENST00000339865 CCAR2Q8N163 923 aaKnown RBP16.22■□□□□ 0.19
USP47-202ENST00000339865 CHMP4BQ9H444 224 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms