RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 TMX4Q9H1E5 349 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-202ENST00000339701 CUX1P39880 1505 aa4.49□□□□□ -1.69
CSMD3-202ENST00000339701 PBRM1Q86U86 1689 aa4.48□□□□□ -1.69
CSMD3-202ENST00000339701 MAP3K1Q13233 1512 aa4.48□□□□□ -1.69
CSMD3-202ENST00000339701 ANO8Q9HCE9 1232 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-202ENST00000339701 RSF1Q96T23 1441 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-202ENST00000339701 CEP164Q9UPV0 1460 aa4.47□□□□□ -1.69
CSMD3-202ENST00000339701 ZNF316A6NFI3 1004 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-202ENST00000339701 FAM135AQ9P2D6 1515 aa4.47□□□□□ -1.69
CSMD3-202ENST00000339701 OSCARQ8IYS5 282 aa4.46□□□□□ -1.69
CSMD3-202ENST00000339701 TRIM44Q96DX7 344 aaPredicted RBP4.46□□□□□ -1.7
CSMD3-202ENST00000339701 CHGAP10645 457 aaKnown RBP4.46□□□□□ -1.7
CSMD3-202ENST00000339701 SCAPERQ9BY12 1400 aa4.46□□□□□ -1.7
CSMD3-202ENST00000339701 TRIM26Q12899 539 aaPredicted RBP4.46□□□□□ -1.7
CSMD3-202ENST00000339701 TOP2BQ02880 1626 aa4.45□□□□□ -1.7
CSMD3-202ENST00000339701 SENP3Q9H4L4 574 aaPredicted RBP4.45□□□□□ -1.7
CSMD3-202ENST00000339701 NESP48681 1621 aa4.45□□□□□ -1.7
CSMD3-202ENST00000339701 CCDC18Q5T9S5 1454 aa4.45□□□□□ -1.7
CSMD3-202ENST00000339701 ZBTB47Q9UFB7 747 aaPredicted RBP4.45□□□□□ -1.7
CSMD3-202ENST00000339701 PDS5BQ9NTI5 1447 aa4.44□□□□□ -1.7
CSMD3-202ENST00000339701 USP35Q9P2H5 1018 aa4.44□□□□□ -1.7
CSMD3-202ENST00000339701 POLR3GLQ9BT43 218 aa4.43□□□□□ -1.7
CSMD3-202ENST00000339701 NCAPD3P42695 1498 aa4.43□□□□□ -1.7
CSMD3-202ENST00000339701 CSRNP3Q8WYN3 585 aa4.43□□□□□ -1.7
CSMD3-202ENST00000339701 CFAP44Q96MT7 982 aa4.43□□□□□ -1.7
CSMD3-202ENST00000339701 EIF4G1Q04637 1599 aaKnown RBP4.43□□□□□ -1.7
CSMD3-202ENST00000339701 DNMBPQ6XZF7 1577 aa4.43□□□□□ -1.7
CSMD3-202ENST00000339701 CCDC9Q9Y3X0 531 aaKnown RBP4.43□□□□□ -1.7
CSMD3-202ENST00000339701 CECR2Q9BXF3 1484 aa4.43□□□□□ -1.7
CSMD3-202ENST00000339701 KRI1Q8N9T8 703 aaKnown RBP4.43□□□□□ -1.7
CSMD3-202ENST00000339701 TNNT2P45379 298 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-202ENST00000339701 ZNF777Q9ULD5 760 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-202ENST00000339701 UPF2Q9HAU5 1272 aaKnown RBP4.41□□□□□ -1.7
CSMD3-202ENST00000339701 HMGB2P26583 209 aaKnown RBP4.41□□□□□ -1.7
CSMD3-202ENST00000339701 EIF4G2P78344 907 aaKnown RBP eCLIP4.41□□□□□ -1.7
CSMD3-202ENST00000339701 KCNH8Q96L42 1107 aa4.4□□□□□ -1.7
CSMD3-202ENST00000339701 HECW1Q76N89 1606 aa4.4□□□□□ -1.7
CSMD3-202ENST00000339701 CYB5RLQ6IPT4 315 aa4.4□□□□□ -1.7
CSMD3-202ENST00000339701 L1TD1Q5T7N2 865 aaKnown RBP4.4□□□□□ -1.71
CSMD3-202ENST00000339701 TRIM52Q96A61 297 aa4.4□□□□□ -1.71
CSMD3-202ENST00000339701 KIF27Q86VH2 1401 aa4.4□□□□□ -1.71
CSMD3-202ENST00000339701 SUPT6HQ7KZ85 1726 aaKnown RBP4.39□□□□□ -1.71
CSMD3-202ENST00000339701 LMOD2Q6P5Q4 547 aa4.39□□□□□ -1.71
CSMD3-202ENST00000339701 CFAP43Q8NDM7 1665 aa4.39□□□□□ -1.71
CSMD3-202ENST00000339701 FMN1Q68DA7 1419 aa4.39□□□□□ -1.71
CSMD3-202ENST00000339701 LOC105371045A0A1W2PR82 267 aa4.39□□□□□ -1.71
CSMD3-202ENST00000339701 ZBTB7CA1YPR0 619 aa4.39□□□□□ -1.71
CSMD3-202ENST00000339701 WRNQ14191 1432 aaPredicted RBP eCLIP4.38□□□□□ -1.71
CSMD3-202ENST00000339701 CHMP4BQ9H444 224 aaKnown RBP4.38□□□□□ -1.71
CSMD3-202ENST00000339701 ADGBQ8N7X0 1667 aa4.38□□□□□ -1.71
CSMD3-202ENST00000339701 AQRO60306 1485 aaKnown RBP eCLIP4.38□□□□□ -1.71
CSMD3-202ENST00000339701 POLR1AO95602 1720 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-202ENST00000339701 ZNF326Q5BKZ1 582 aaKnown RBP4.38□□□□□ -1.71
CSMD3-202ENST00000339701 TSPY4P0CV99 314 aa4.37□□□□□ -1.71
CSMD3-202ENST00000339701 TSPY10P0CW01 314 aa4.37□□□□□ -1.71
CSMD3-202ENST00000339701 TIMELESSQ9UNS1 1208 aa4.37□□□□□ -1.71
CSMD3-202ENST00000339701 ITGAEP38570 1179 aa4.37□□□□□ -1.71
CSMD3-202ENST00000339701 DMRT2Q9Y5R5 561 aa4.37□□□□□ -1.71
CSMD3-202ENST00000339701 ANP32AP39687 249 aaKnown RBP4.37□□□□□ -1.71
CSMD3-202ENST00000339701 EID1Q9Y6B2 187 aa4.37□□□□□ -1.71
CSMD3-202ENST00000339701 ATAD2BQ9ULI0 1458 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 PLEKHG5O94827 1062 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 GCC2Q8IWJ2 1684 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 PLEKHH2Q8IVE3 1493 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 HMGB3O15347 200 aaKnown RBP4.36□□□□□ -1.71
CSMD3-202ENST00000339701 MLECQ14165 292 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 CHMP4AQ9BY43 222 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 NRDCO43847 1150 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 PPP1R1BQ9UD71 204 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-202ENST00000339701 FAM50AQ14320 339 aaKnown RBP4.36□□□□□ -1.71
CSMD3-202ENST00000339701 STAC3Q96MF2 364 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 ARXQ96QS3 562 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 PLEKHD1A6NEE1 506 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 CLIP1P30622 1438 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 MROH2BQ7Z745 1585 aa4.36□□□□□ -1.71
CSMD3-202ENST00000339701 GTF3C3Q9Y5Q9 886 aa4.35□□□□□ -1.71
CSMD3-202ENST00000339701 GOLGA2Q08379 1002 aa4.35□□□□□ -1.71
CSMD3-202ENST00000339701 A0A0U1RQG5 324 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-202ENST00000339701 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-202ENST00000339701 MAGI1Q96QZ7 1491 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-202ENST00000339701 WDR7Q9Y4E6 1490 aa4.34□□□□□ -1.71
CSMD3-202ENST00000339701 CADPSQ9ULU8 1353 aa4.34□□□□□ -1.71
CSMD3-202ENST00000339701 ARID3CA6NKF2 412 aa4.34□□□□□ -1.71
CSMD3-202ENST00000339701 CCDC88BA6NC98 1476 aa4.34□□□□□ -1.71
CSMD3-202ENST00000339701 PTMSP20962 102 aa4.34□□□□□ -1.71
CSMD3-202ENST00000339701 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.34□□□□□ -1.71
CSMD3-202ENST00000339701 G3V3G9 751 aa4.33□□□□□ -1.72
CSMD3-202ENST00000339701 DCAF8Q5TAQ9 597 aa4.33□□□□□ -1.72
CSMD3-202ENST00000339701 PKNOX2Q96KN3 472 aa4.33□□□□□ -1.72
CSMD3-202ENST00000339701 CDK11BP21127 795 aaKnown RBP4.33□□□□□ -1.72
CSMD3-202ENST00000339701 WASHC2AQ641Q2 1341 aa4.33□□□□□ -1.72
CSMD3-202ENST00000339701 FYCO1Q9BQS8 1478 aa4.33□□□□□ -1.72
CSMD3-202ENST00000339701 HMGB1P09429 215 aaKnown RBP4.32□□□□□ -1.72
CSMD3-202ENST00000339701 KLHL34Q8N239 644 aa4.32□□□□□ -1.72
CSMD3-202ENST00000339701 SYNJ1O43426 1573 aa4.32□□□□□ -1.72
CSMD3-202ENST00000339701 ERICH6BQ5W0A0 696 aa4.32□□□□□ -1.72
CSMD3-202ENST00000339701 CFTRP13569 1480 aa4.32□□□□□ -1.72
CSMD3-202ENST00000339701 PRKCSHP14314 528 aaPredicted RBP4.32□□□□□ -1.72
CSMD3-202ENST00000339701 C16orf71Q8IYS4 520 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-202ENST00000339701 EHBP1L1Q8N3D4 1523 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms