RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 GRIN2BQ13224 1484 aa23.02■■□□□ 1.28
TPM3-205ENST00000328159 ZNF608Q9ULD9 1512 aaPredicted RBP23.02■■□□□ 1.28
TPM3-205ENST00000328159 ADAMTS12P58397 1594 aa23■■□□□ 1.27
TPM3-205ENST00000328159 FHAD1B1AJZ9 1412 aa23■■□□□ 1.27
TPM3-205ENST00000328159 EFCAB5A4FU69 1503 aa22.99■■□□□ 1.27
TPM3-205ENST00000328159 EIF4G3O43432 1585 aaKnown RBP22.95■■□□□ 1.26
TPM3-205ENST00000328159 FHOD3Q2V2M9 1422 aa22.87■■□□□ 1.25
TPM3-205ENST00000328159 P3H3Q8IVL6 736 aa22.87■■□□□ 1.25
TPM3-205ENST00000328159 SAMD9Q5K651 1589 aa22.87■■□□□ 1.25
TPM3-205ENST00000328159 SNAPC4Q5SXM2 1469 aa22.86■■□□□ 1.25
TPM3-205ENST00000328159 MAP3K1Q13233 1512 aa22.85■■□□□ 1.25
TPM3-205ENST00000328159 PCF11O94913 1555 aaKnown RBP22.84■■□□□ 1.25
TPM3-205ENST00000328159 KANK4Q5T7N3 995 aaPredicted RBP22.84■■□□□ 1.25
TPM3-205ENST00000328159 TIAM1Q13009 1591 aa22.82■■□□□ 1.24
TPM3-205ENST00000328159 IQGAP2Q13576 1575 aa22.8■■□□□ 1.24
TPM3-205ENST00000328159 MAGI1Q96QZ7 1491 aaPredicted RBP22.79■■□□□ 1.24
TPM3-205ENST00000328159 FYCO1Q9BQS8 1478 aa22.78■■□□□ 1.24
TPM3-205ENST00000328159 CFAP43Q8NDM7 1665 aa22.77■■□□□ 1.24
TPM3-205ENST00000328159 FMN1Q68DA7 1419 aa22.77■■□□□ 1.24
TPM3-205ENST00000328159 CASKIN1Q8WXD9 1431 aa22.77■■□□□ 1.24
TPM3-205ENST00000328159 GRIN2AQ12879 1464 aa22.76■■□□□ 1.23
TPM3-205ENST00000328159 ZEB1P37275 1124 aaPredicted RBP22.75■■□□□ 1.23
TPM3-205ENST00000328159 SYNJ2O15056 1496 aa22.71■■□□□ 1.23
TPM3-205ENST00000328159 LRRC9Q6ZRR7 1453 aa22.7■■□□□ 1.22
TPM3-205ENST00000328159 KIAA0586Q9BVV6 1533 aa22.69■■□□□ 1.22
TPM3-205ENST00000328159 UGGT2Q9NYU1 1516 aa22.69■■□□□ 1.22
TPM3-205ENST00000328159 ATP1B4Q9UN42 357 aaPredicted RBP22.67■■□□□ 1.22
TPM3-205ENST00000328159 RRBP1Q9P2E9 1410 aaKnown RBP22.66■■□□□ 1.22
TPM3-205ENST00000328159 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.65■■□□□ 1.22
TPM3-205ENST00000328159 CHMP7Q8WUX9 453 aaPredicted RBP22.64■■□□□ 1.22
TPM3-205ENST00000328159 HNRNPUL2Q1KMD3 747 aaKnown RBP22.63■■□□□ 1.21
TPM3-205ENST00000328159 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
TPM3-205ENST00000328159 CCER1Q8TC90 406 aaPredicted RBP22.61■■□□□ 1.21
TPM3-205ENST00000328159 LRRIQ1Q96JM4 1722 aa22.6■■□□□ 1.21
TPM3-205ENST00000328159 KIAA0556O60303 1618 aa22.57■■□□□ 1.2
TPM3-205ENST00000328159 FBLN2P98095 1184 aa22.57■■□□□ 1.2
TPM3-205ENST00000328159 NUP160Q12769 1436 aa22.57■■□□□ 1.2
TPM3-205ENST00000328159 CCNB3Q8WWL7 1395 aa22.56■■□□□ 1.2
TPM3-205ENST00000328159 DISP1Q96F81 1524 aa22.56■■□□□ 1.2
TPM3-205ENST00000328159 HECW1Q76N89 1606 aa22.53■■□□□ 1.2
TPM3-205ENST00000328159 PHLDB1Q86UU1 1377 aa22.51■■□□□ 1.19
TPM3-205ENST00000328159 CCDC18Q5T9S5 1454 aa22.5■■□□□ 1.19
TPM3-205ENST00000328159 MTUS2Q5JR59 1369 aa22.47■■□□□ 1.19
TPM3-205ENST00000328159 EHBP1L1Q8N3D4 1523 aa22.44■■□□□ 1.18
TPM3-205ENST00000328159 EPRSP07814 1512 aaKnown RBP22.43■■□□□ 1.18
TPM3-205ENST00000328159 CHD1O14646 1710 aa22.43■■□□□ 1.18
TPM3-205ENST00000328159 SUPT6HQ7KZ85 1726 aaKnown RBP22.41■■□□□ 1.18
TPM3-205ENST00000328159 JPH4Q96JJ6 628 aa22.4■■□□□ 1.18
TPM3-205ENST00000328159 CARMIL2Q6F5E8 1435 aa22.4■■□□□ 1.18
TPM3-205ENST00000328159 RAPGEF6Q8TEU7 1601 aa22.39■■□□□ 1.18
TPM3-205ENST00000328159 MAGI3Q5TCQ9 1506 aa22.38■■□□□ 1.17
TPM3-205ENST00000328159 NCOA2Q15596 1464 aa22.37■■□□□ 1.17
TPM3-205ENST00000328159 CDK13Q14004 1512 aaKnown RBP22.37■■□□□ 1.17
TPM3-205ENST00000328159 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.34■■□□□ 1.173e-7■■□□□ 11.8
TPM3-205ENST00000328159 FGD6Q6ZV73 1430 aa22.33■■□□□ 1.17
TPM3-205ENST00000328159 ITGAEP38570 1179 aa22.33■■□□□ 1.17
TPM3-205ENST00000328159 FAM50AQ14320 339 aaKnown RBP22.33■■□□□ 1.17
TPM3-205ENST00000328159 NUP153P49790 1475 aaKnown RBP22.33■■□□□ 1.16
TPM3-205ENST00000328159 ARHGEF11O15085 1522 aa22.32■■□□□ 1.16
TPM3-205ENST00000328159 MYOM3Q5VTT5 1437 aa22.3■■□□□ 1.16
TPM3-205ENST00000328159 ARID3CA6NKF2 412 aa22.27■■□□□ 1.16
TPM3-205ENST00000328159 PLB1Q6P1J6 1458 aa22.27■■□□□ 1.15
TPM3-205ENST00000328159 PRG4Q92954 1404 aaPredicted RBP22.25■■□□□ 1.15
TPM3-205ENST00000328159 SHROOM2Q13796 1616 aa22.23■■□□□ 1.15
TPM3-205ENST00000328159 ABCA8O94911 1581 aa22.22■■□□□ 1.15
TPM3-205ENST00000328159 DHX57Q6P158 1386 aaKnown RBP22.22■■□□□ 1.15
TPM3-205ENST00000328159 PTPN23Q9H3S7 1636 aa22.21■■□□□ 1.15
TPM3-205ENST00000328159 SETD5Q9C0A6 1442 aa22.19■■□□□ 1.14
TPM3-205ENST00000328159 CDK11AQ9UQ88 783 aaPredicted RBP22.19■■□□□ 1.14
TPM3-205ENST00000328159 RAB3GAP2Q9H2M9 1393 aa22.18■■□□□ 1.14
TPM3-205ENST00000328159 TCOF1Q13428 1488 aaKnown RBP22.16■■□□□ 1.14
TPM3-205ENST00000328159 CLSPNQ9HAW4 1339 aa22.16■■□□□ 1.14
TPM3-205ENST00000328159 PTPRGP23470 1445 aa22.14■■□□□ 1.13
TPM3-205ENST00000328159 MIA2Q96PC5 1412 aa22.14■■□□□ 1.13
TPM3-205ENST00000328159 TROQ12816 1431 aaPredicted RBP22.13■■□□□ 1.13
TPM3-205ENST00000328159 CLASP1Q7Z460 1538 aa22.13■■□□□ 1.13
TPM3-205ENST00000328159 ADCY10Q96PN6 1610 aa22.1■■□□□ 1.13
TPM3-205ENST00000328159 PTPRKQ15262 1439 aa22.1■■□□□ 1.13
TPM3-205ENST00000328159 ATP10BO94823 1461 aa22.08■■□□□ 1.13
TPM3-205ENST00000328159 ERCC6L2Q5T890 1561 aa22.07■■□□□ 1.12
TPM3-205ENST00000328159 KIF14Q15058 1648 aa22.04■■□□□ 1.12
TPM3-205ENST00000328159 HFM1A2PYH4 1435 aa22.03■■□□□ 1.12
TPM3-205ENST00000328159 ITSN2Q9NZM3 1697 aa22.03■■□□□ 1.12
TPM3-205ENST00000328159 UACAQ9BZF9 1416 aa22.03■■□□□ 1.12
TPM3-205ENST00000328159 PLEKHD1A6NEE1 506 aa22■■□□□ 1.11
TPM3-205ENST00000328159 MAPKBP1O60336 1514 aa21.98■■□□□ 1.11
TPM3-205ENST00000328159 NAIPQ13075 1403 aa21.97■■□□□ 1.11
TPM3-205ENST00000328159 GPATCH8Q9UKJ3 1502 aaKnown RBP21.97■■□□□ 1.11
TPM3-205ENST00000328159 ABCC2Q92887 1545 aa21.96■■□□□ 1.11
TPM3-205ENST00000328159 DNMT1P26358 1616 aaKnown RBP21.95■■□□□ 1.1
TPM3-205ENST00000328159 GCC2Q8IWJ2 1684 aa21.95■■□□□ 1.1
TPM3-205ENST00000328159 AKNAQ7Z591 1439 aa21.94■■□□□ 1.1
TPM3-205ENST00000328159 ABCC10Q5T3U5 1492 aa21.94■■□□□ 1.1
TPM3-205ENST00000328159 DAPK1P53355 1430 aa21.92■■□□□ 1.1
TPM3-205ENST00000328159 CDC42BPAQ5VT25 1732 aa21.92■■□□□ 1.1
TPM3-205ENST00000328159 CFDP1Q9UEE9 299 aaPredicted RBP21.92■■□□□ 1.1
TPM3-205ENST00000328159 CAMSAP2Q08AD1 1489 aa21.91■■□□□ 1.1
TPM3-205ENST00000328159 ZNF644Q9H582 1327 aaPredicted RBP21.91■■□□□ 1.1
TPM3-205ENST00000328159 CHIC2Q9UKJ5 165 aa21.9■■□□□ 1.1
TPM3-205ENST00000328159 ABCC5O15440 1437 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms