RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
RFFL-201ENST00000315249 RTL5Q5HYW3 569 aaPredicted RBP18.31■□□□□ 0.52
RFFL-201ENST00000315249 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
RFFL-201ENST00000315249 BAZ1AQ9NRL2 1556 aaPredicted RBP18.29■□□□□ 0.52
RFFL-201ENST00000315249 LMOD2Q6P5Q4 547 aa18.29■□□□□ 0.52
RFFL-201ENST00000315249 DCAF1Q9Y4B6 1507 aa18.26■□□□□ 0.51
RFFL-201ENST00000315249 WDR43Q15061 677 aaKnown RBP eCLIP18.25■□□□□ 0.51
RFFL-201ENST00000315249 CECR2Q9BXF3 1484 aa18.24■□□□□ 0.51
RFFL-201ENST00000315249 HIRIP3Q9BW71 556 aaPredicted RBP18.24■□□□□ 0.51
RFFL-201ENST00000315249 GOLGA3Q08378 1498 aa18.22■□□□□ 0.51
RFFL-201ENST00000315249 ARXQ96QS3 562 aa18.2■□□□□ 0.5
RFFL-201ENST00000315249 PPM1GO15355 546 aaPredicted RBP18.18■□□□□ 0.5
RFFL-201ENST00000315249 HNRNPUQ00839 825 aaKnown RBP eCLIP18.17■□□□□ 0.5
RFFL-201ENST00000315249 CUX2O14529 1486 aa18.16■□□□□ 0.5
RFFL-201ENST00000315249 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.49
RFFL-201ENST00000315249 POGKQ9P215 609 aa18.13■□□□□ 0.49
RFFL-201ENST00000315249 EEA1Q15075 1411 aa18.11■□□□□ 0.49
RFFL-201ENST00000315249 CEP162Q5TB80 1403 aa18.11■□□□□ 0.49
RFFL-201ENST00000315249 GTF3C3Q9Y5Q9 886 aa18.1■□□□□ 0.49
RFFL-201ENST00000315249 CARMIL1Q5VZK9 1371 aa18.08■□□□□ 0.49
RFFL-201ENST00000315249 EIF4G2P78344 907 aaKnown RBP eCLIP18.07■□□□□ 0.48
RFFL-201ENST00000315249 GGT6Q6P531 493 aa18.07■□□□□ 0.48
RFFL-201ENST00000315249 CEP164Q9UPV0 1460 aa18.06■□□□□ 0.48
RFFL-201ENST00000315249 CCNB3Q8WWL7 1395 aa18.05■□□□□ 0.48
RFFL-201ENST00000315249 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
RFFL-201ENST00000315249 MRS2Q9HD23 443 aa18.05■□□□□ 0.48
RFFL-201ENST00000315249 HSP90AA1P07900 732 aaKnown RBP18.04■□□□□ 0.48
RFFL-201ENST00000315249 TDRD9Q8NDG6 1382 aaKnown RBP18.03■□□□□ 0.48
RFFL-201ENST00000315249 SOGA1O94964 1423 aa18.02■□□□□ 0.48
RFFL-201ENST00000315249 NPHP1O15259 732 aa18■□□□□ 0.47
RFFL-201ENST00000315249 KANK1Q14678 1352 aa17.99■□□□□ 0.47
RFFL-201ENST00000315249 CARD11Q9BXL7 1154 aa17.98■□□□□ 0.47
RFFL-201ENST00000315249 SOX12O15370 315 aa17.98■□□□□ 0.47
RFFL-201ENST00000315249 CARMIL2Q6F5E8 1435 aa17.98■□□□□ 0.47
RFFL-201ENST00000315249 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.98■□□□□ 0.47
RFFL-201ENST00000315249 SENP3-EIF4A1A0A087X0R7 540 aa17.97■□□□□ 0.47
RFFL-201ENST00000315249 TNNT2P45379 298 aaPredicted RBP17.97■□□□□ 0.47
RFFL-201ENST00000315249 HDGFP51858 240 aaKnown RBP17.97■□□□□ 0.47
RFFL-201ENST00000315249 KNSTRNQ9Y448 316 aa17.96■□□□□ 0.47
RFFL-201ENST00000315249 SAFB2Q14151 953 aaKnown RBP eCLIP17.96■□□□□ 0.47
RFFL-201ENST00000315249 MROH2BQ7Z745 1585 aa17.95■□□□□ 0.46
RFFL-201ENST00000315249 CCDC88BA6NC98 1476 aa17.94■□□□□ 0.46
RFFL-201ENST00000315249 CFAP53Q96M91 514 aa17.94■□□□□ 0.46
RFFL-201ENST00000315249 FKBP8Q14318 412 aa17.94■□□□□ 0.46
RFFL-201ENST00000315249 CDCA8Q53HL2 280 aa17.94■□□□□ 0.46
RFFL-201ENST00000315249 MYH16Q9H6N6 1097 aa17.94■□□□□ 0.46
RFFL-201ENST00000315249 UPF2Q9HAU5 1272 aaKnown RBP17.93■□□□□ 0.46
RFFL-201ENST00000315249 LAS1LQ9Y4W2 734 aaKnown RBP17.93■□□□□ 0.46
RFFL-201ENST00000315249 ANP32AP39687 249 aaKnown RBP17.92■□□□□ 0.46
RFFL-201ENST00000315249 CYB5RLQ6IPT4 315 aa17.92■□□□□ 0.46
RFFL-201ENST00000315249 ABCC8Q09428 1581 aa17.92■□□□□ 0.46
RFFL-201ENST00000315249 FHAD1B1AJZ9 1412 aa17.92■□□□□ 0.46
RFFL-201ENST00000315249 STK26Q9P289 416 aa17.91■□□□□ 0.46
RFFL-201ENST00000315249 WIZO95785 1651 aa17.9■□□□□ 0.46
RFFL-201ENST00000315249 TNIKQ9UKE5 1360 aa17.88■□□□□ 0.45
RFFL-201ENST00000315249 NEUROD2Q15784 382 aa17.88■□□□□ 0.45
RFFL-201ENST00000315249 ACIN1Q9UKV3 1341 aaKnown RBP17.88■□□□□ 0.45
RFFL-201ENST00000315249 SRPK2P78362 688 aaKnown RBP17.87■□□□□ 0.45
RFFL-201ENST00000315249 DCAF11Q8TEB1 546 aa17.87■□□□□ 0.45
RFFL-201ENST00000315249 MYO15BQ96JP2 1530 aa17.85■□□□□ 0.45
RFFL-201ENST00000315249 CCDC136Q96JN2 1154 aa17.84■□□□□ 0.45
RFFL-201ENST00000315249 PAK3O75914 559 aaPredicted RBP17.83■□□□□ 0.45
RFFL-201ENST00000315249 SIN3AQ96ST3 1273 aa17.82■□□□□ 0.44
RFFL-201ENST00000315249 EFCAB2Q5VUJ9 269 aa17.81■□□□□ 0.44
RFFL-201ENST00000315249 U2SURPO15042 1029 aaKnown RBP17.81■□□□□ 0.44
RFFL-201ENST00000315249 MAPK8IP3Q9UPT6 1336 aa17.81■□□□□ 0.44
RFFL-201ENST00000315249 AEBP2Q6ZN18 517 aaPredicted RBP17.8■□□□□ 0.44
RFFL-201ENST00000315249 CC2D1BQ5T0F9 858 aaKnown RBP17.8■□□□□ 0.44
RFFL-201ENST00000315249 IRX6P78412 446 aaPredicted RBP17.79■□□□□ 0.44
RFFL-201ENST00000315249 CADPSQ9ULU8 1353 aa17.79■□□□□ 0.44
RFFL-201ENST00000315249 NUDCQ9Y266 331 aa17.78■□□□□ 0.44
RFFL-201ENST00000315249 JPH4Q96JJ6 628 aa17.77■□□□□ 0.44
RFFL-201ENST00000315249 OSCARQ8IYS5 282 aa17.76■□□□□ 0.43
RFFL-201ENST00000315249 CCDC9Q9Y3X0 531 aaKnown RBP17.76■□□□□ 0.43
RFFL-201ENST00000315249 KIF3BO15066 747 aa17.75■□□□□ 0.43
RFFL-201ENST00000315249 HNRNPMP52272 730 aaKnown RBP eCLIP17.74■□□□□ 0.432e-6■■■■□ 21.2
RFFL-201ENST00000315249 FOXD1Q16676 465 aa17.73■□□□□ 0.43
RFFL-201ENST00000315249 NUTM2DQ5VT03 806 aaPredicted RBP17.72■□□□□ 0.43
RFFL-201ENST00000315249 FTSJ3Q8IY81 847 aaKnown RBP17.7■□□□□ 0.42
RFFL-201ENST00000315249 ARHGAP35Q9NRY4 1499 aa17.7■□□□□ 0.42
RFFL-201ENST00000315249 EID1Q9Y6B2 187 aa17.7■□□□□ 0.42
RFFL-201ENST00000315249 TMF1P82094 1093 aa17.7■□□□□ 0.42
RFFL-201ENST00000315249 CSB-PGBD3P0DP91 1061 aa17.7■□□□□ 0.42
RFFL-201ENST00000315249 PKD2Q13563 968 aa17.7■□□□□ 0.42
RFFL-201ENST00000315249 WASHC2CQ9Y4E1 1318 aa17.68■□□□□ 0.42
RFFL-201ENST00000315249 TOP2AP11388 1531 aaKnown RBP17.67■□□□□ 0.42
RFFL-201ENST00000315249 MIER1Q8N108 512 aa17.66■□□□□ 0.42
RFFL-201ENST00000315249 FANCD2Q9BXW9 1451 aa17.66■□□□□ 0.42
RFFL-201ENST00000315249 ANP32BQ92688 251 aaKnown RBP17.66■□□□□ 0.42
RFFL-201ENST00000315249 SPAG9O60271 1321 aaKnown RBP17.66■□□□□ 0.42
RFFL-201ENST00000315249 ATAD2BQ9ULI0 1458 aa17.65■□□□□ 0.42
RFFL-201ENST00000315249 FMN1Q68DA7 1419 aa17.63■□□□□ 0.41
RFFL-201ENST00000315249 SMARCA4P51532 1647 aa17.63■□□□□ 0.41
RFFL-201ENST00000315249 TULP1O00294 542 aaPredicted RBP17.63■□□□□ 0.41
RFFL-201ENST00000315249 NUTM2FA1L443 756 aa17.63■□□□□ 0.41
RFFL-201ENST00000315249 GOLGA2Q08379 1002 aa17.63■□□□□ 0.41
RFFL-201ENST00000315249 TAOK2Q9UL54 1235 aa17.62■□□□□ 0.41
RFFL-201ENST00000315249 NUP155O75694 1391 aa17.62■□□□□ 0.41
RFFL-201ENST00000315249 HDGFL2Q7Z4V5 671 aaPredicted RBP17.61■□□□□ 0.41
RFFL-201ENST00000315249 MORC1Q86VD1 984 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms