RNA–Protein interactions for RNA: ENST00000310397.12

SNED1-201, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SNED1, Length 8,174 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-201ENST00000310397 CHIC2Q9UKJ5 165 aa17.38■□□□□ 0.37
SNED1-201ENST00000310397 TRIM44Q96DX7 344 aaPredicted RBP17.38■□□□□ 0.37
SNED1-201ENST00000310397 SUPT16HQ9Y5B9 1047 aaKnown RBP17.37■□□□□ 0.37
SNED1-201ENST00000310397 PPP4R2Q9NY27 417 aa17.35■□□□□ 0.37
SNED1-201ENST00000310397 TSPY4P0CV99 314 aa17.34■□□□□ 0.37
SNED1-201ENST00000310397 TSPY10P0CW01 314 aa17.34■□□□□ 0.37
SNED1-201ENST00000310397 HIRIP3Q9BW71 556 aaPredicted RBP17.34■□□□□ 0.37
SNED1-201ENST00000310397 ERICH6BQ5W0A0 696 aa17.34■□□□□ 0.37
SNED1-201ENST00000310397 ARXQ96QS3 562 aa17.33■□□□□ 0.36
SNED1-201ENST00000310397 MYH16Q9H6N6 1097 aa17.33■□□□□ 0.36
SNED1-201ENST00000310397 GOLGA6L22H0YM25 854 aa17.32■□□□□ 0.36
SNED1-201ENST00000310397 NACADO15069 1562 aa17.3■□□□□ 0.36
SNED1-201ENST00000310397 WRNQ14191 1432 aaPredicted RBP eCLIP17.29■□□□□ 0.36
SNED1-201ENST00000310397 NOP58Q9Y2X3 529 aaKnown RBP17.29■□□□□ 0.36
SNED1-201ENST00000310397 KDM2AQ9Y2K7 1162 aa17.29■□□□□ 0.36
SNED1-201ENST00000310397 CHGAP10645 457 aaKnown RBP17.24■□□□□ 0.35
SNED1-201ENST00000310397 TIMELESSQ9UNS1 1208 aa17.24■□□□□ 0.35
SNED1-201ENST00000310397 KIF27Q86VH2 1401 aa17.23■□□□□ 0.35
SNED1-201ENST00000310397 TNNT2P45379 298 aaPredicted RBP17.22■□□□□ 0.35
SNED1-201ENST00000310397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.35
SNED1-201ENST00000310397 CDCA8Q53HL2 280 aa17.22■□□□□ 0.35
SNED1-201ENST00000310397 RRP7BPQ9NSQ0 103 aa17.21■□□□□ 0.35
SNED1-201ENST00000310397 STAG3Q9UJ98 1225 aa17.21■□□□□ 0.35
SNED1-201ENST00000310397 NCLP19338 710 aaKnown RBP17.21■□□□□ 0.34
SNED1-201ENST00000310397 BAZ1AQ9NRL2 1556 aaPredicted RBP17.2■□□□□ 0.34
SNED1-201ENST00000310397 CCER2I3L3R5 266 aa17.2■□□□□ 0.34
SNED1-201ENST00000310397 CCNB3Q8WWL7 1395 aa17.19■□□□□ 0.34
SNED1-201ENST00000310397 ESF1Q9H501 851 aaKnown RBP17.18■□□□□ 0.34
SNED1-201ENST00000310397 FHAD1B1AJZ9 1412 aa17.17■□□□□ 0.34
SNED1-201ENST00000310397 KNSTRNQ9Y448 316 aa17.15■□□□□ 0.34
SNED1-201ENST00000310397 RBM19Q9Y4C8 960 aaKnown RBP17.12■□□□□ 0.33
SNED1-201ENST00000310397 BAZ1BQ9UIG0 1483 aaKnown RBP17.12■□□□□ 0.33
SNED1-201ENST00000310397 CASC1Q6TDU7 716 aa17.11■□□□□ 0.33
SNED1-201ENST00000310397 CFAP53Q96M91 514 aa17.11■□□□□ 0.33
SNED1-201ENST00000310397 FTSJ3Q8IY81 847 aaKnown RBP17.1■□□□□ 0.33
SNED1-201ENST00000310397 B4GALNT3Q6L9W6 998 aa17.08■□□□□ 0.33
SNED1-201ENST00000310397 CARD11Q9BXL7 1154 aa17.08■□□□□ 0.32
SNED1-201ENST00000310397 LAS1LQ9Y4W2 734 aaKnown RBP17.08■□□□□ 0.32
SNED1-201ENST00000310397 PTMAP06454 111 aaKnown RBP17.06■□□□□ 0.32
SNED1-201ENST00000310397 DEKP35659 375 aaKnown RBP17.06■□□□□ 0.32
SNED1-201ENST00000310397 VPS8Q8N3P4 1428 aa17.06■□□□□ 0.32
SNED1-201ENST00000310397 NAP1L5Q96NT1 182 aaPredicted RBP17.06■□□□□ 0.32
SNED1-201ENST00000310397 CHMP4BQ9H444 224 aaKnown RBP17.05■□□□□ 0.32
SNED1-201ENST00000310397 NPM1P06748 294 aaKnown RBP eCLIP17.05■□□□□ 0.32
SNED1-201ENST00000310397 MS4A1P11836 297 aa17.05■□□□□ 0.32
SNED1-201ENST00000310397 DNTTIP2Q5QJE6 756 aaKnown RBP17.04■□□□□ 0.32
SNED1-201ENST00000310397 SIN3AQ96ST3 1273 aa17.04■□□□□ 0.32
SNED1-201ENST00000310397 L1TD1Q5T7N2 865 aaKnown RBP17.03■□□□□ 0.32
SNED1-201ENST00000310397 SETD5Q9C0A6 1442 aa17.03■□□□□ 0.32
SNED1-201ENST00000310397 PLEKHD1A6NEE1 506 aa17■□□□□ 0.31
SNED1-201ENST00000310397 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
SNED1-201ENST00000310397 RTN4Q9NQC3 1192 aaKnown RBP16.99■□□□□ 0.31
SNED1-201ENST00000310397 CFDP1Q9UEE9 299 aaPredicted RBP16.99■□□□□ 0.31
SNED1-201ENST00000310397 RGS3P49796 1198 aa16.99■□□□□ 0.31
SNED1-201ENST00000310397 RGL3Q3MIN7 710 aa16.97■□□□□ 0.31
SNED1-201ENST00000310397 ZRSR1Q15695 479 aaKnown RBP16.97■□□□□ 0.31
SNED1-201ENST00000310397 ARHGAP35Q9NRY4 1499 aa16.96■□□□□ 0.31
SNED1-201ENST00000310397 HSP90AB1P08238 724 aaKnown RBP16.95■□□□□ 0.3
SNED1-201ENST00000310397 CFAP44Q96MT7 982 aa16.92■□□□□ 0.3
SNED1-201ENST00000310397 NUDCQ9Y266 331 aa16.92■□□□□ 0.3
SNED1-201ENST00000310397 HSCBQ8IWL3 235 aa16.91■□□□□ 0.3
SNED1-201ENST00000310397 PNNQ9H307 717 aaKnown RBP16.91■□□□□ 0.3
SNED1-201ENST00000310397 MAPK8IP3Q9UPT6 1336 aa16.91■□□□□ 0.3
SNED1-201ENST00000310397 SOGA1O94964 1423 aa16.91■□□□□ 0.3
SNED1-201ENST00000310397 TCERG1O14776 1098 aaKnown RBP16.9■□□□□ 0.3
SNED1-201ENST00000310397 TSHZ2Q9NRE2 1034 aa16.9■□□□□ 0.3
SNED1-201ENST00000310397 CDK11BP21127 795 aaKnown RBP16.9■□□□□ 0.3
SNED1-201ENST00000310397 PTMSP20962 102 aa16.89■□□□□ 0.29
SNED1-201ENST00000310397 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
SNED1-201ENST00000310397 MSNP26038 577 aaKnown RBP16.88■□□□□ 0.29
SNED1-201ENST00000310397 TMF1P82094 1093 aa16.88■□□□□ 0.29
SNED1-201ENST00000310397 FRAT1Q92837 279 aaPredicted RBP16.88■□□□□ 0.29
SNED1-201ENST00000310397 CHAF1AQ13111 956 aaPredicted RBP16.87■□□□□ 0.29
SNED1-201ENST00000310397 SENP3-EIF4A1A0A087X0R7 540 aa16.86■□□□□ 0.29
SNED1-201ENST00000310397 GOLGA6L6A8MZA4 724 aa16.85■□□□□ 0.29
SNED1-201ENST00000310397 RAB3GAP2Q9H2M9 1393 aa16.85■□□□□ 0.29
SNED1-201ENST00000310397 NRDCO43847 1150 aa16.84■□□□□ 0.29
SNED1-201ENST00000310397 CC2D1BQ5T0F9 858 aaKnown RBP16.84■□□□□ 0.29
SNED1-201ENST00000310397 ARID4BQ4LE39 1312 aaPredicted RBP16.83■□□□□ 0.28
SNED1-201ENST00000310397 KTN1Q86UP2 1357 aaKnown RBP16.83■□□□□ 0.28
SNED1-201ENST00000310397 NEUROD2Q15784 382 aa16.83■□□□□ 0.28
SNED1-201ENST00000310397 IPO9Q96P70 1041 aaKnown RBP16.83■□□□□ 0.28
SNED1-201ENST00000310397 RCAN3Q9UKA8 241 aa16.82■□□□□ 0.28
SNED1-201ENST00000310397 CECR2Q9BXF3 1484 aa16.82■□□□□ 0.28
SNED1-201ENST00000310397 CARMIL1Q5VZK9 1371 aa16.81■□□□□ 0.28
SNED1-201ENST00000310397 HSPA5P11021 654 aaKnown RBP16.81■□□□□ 0.28
SNED1-201ENST00000310397 RALBP1Q15311 655 aa16.81■□□□□ 0.28
SNED1-201ENST00000310397 USP35Q9P2H5 1018 aa16.8■□□□□ 0.28
SNED1-201ENST00000310397 WIZO95785 1651 aa16.8■□□□□ 0.28
SNED1-201ENST00000310397 DCAF11Q8TEB1 546 aa16.79■□□□□ 0.28
SNED1-201ENST00000310397 GBP4Q96PP9 640 aa16.79■□□□□ 0.28
SNED1-201ENST00000310397 CUX2O14529 1486 aa16.78■□□□□ 0.28
SNED1-201ENST00000310397 CCDC88BA6NC98 1476 aa16.78■□□□□ 0.28
SNED1-201ENST00000310397 PPP1R15AO75807 674 aaPredicted RBP16.77■□□□□ 0.28
SNED1-201ENST00000310397 MROH2BQ7Z745 1585 aa16.76■□□□□ 0.27
SNED1-201ENST00000310397 HAP1P54257 671 aaPredicted RBP16.76■□□□□ 0.27
SNED1-201ENST00000310397 MCCP23508 829 aa16.76■□□□□ 0.27
SNED1-201ENST00000310397 FMN1Q68DA7 1419 aa16.75■□□□□ 0.27
SNED1-201ENST00000310397 PLCB2Q00722 1185 aa16.75■□□□□ 0.27
SNED1-201ENST00000310397 KCNH8Q96L42 1107 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms