RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 SALL2Q9Y467 1007 aaPredicted RBP21.45■■□□□ 1.02
USP42-201ENST00000306177 KCNH8Q96L42 1107 aa21.44■■□□□ 1.02
USP42-201ENST00000306177 MRS2Q9HD23 443 aa21.44■■□□□ 1.02
USP42-201ENST00000306177 WDR43Q15061 677 aaKnown RBP eCLIP21.42■■□□□ 1.02
USP42-201ENST00000306177 EIF4G2P78344 907 aaKnown RBP eCLIP21.41■■□□□ 1.02
USP42-201ENST00000306177 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.39■■□□□ 1.02
USP42-201ENST00000306177 UPF2Q9HAU5 1272 aaKnown RBP21.39■■□□□ 1.01
USP42-201ENST00000306177 HIRIP3Q9BW71 556 aaPredicted RBP21.37■■□□□ 1.01
USP42-201ENST00000306177 MROH2BQ7Z745 1585 aa21.37■■□□□ 1.01
USP42-201ENST00000306177 MIER1Q8N108 512 aa21.35■■□□□ 1.01
USP42-201ENST00000306177 CCDC136Q96JN2 1154 aa21.35■■□□□ 1.01
USP42-201ENST00000306177 CFDP1Q9UEE9 299 aaPredicted RBP21.35■■□□□ 1.01
USP42-201ENST00000306177 ERCC6Q03468 1493 aa21.35■■□□□ 1.01
USP42-201ENST00000306177 SOGA1O94964 1423 aa21.32■■□□□ 1
USP42-201ENST00000306177 HSP90AA1P07900 732 aaKnown RBP21.32■■□□□ 1
USP42-201ENST00000306177 CUX2O14529 1486 aa21.3■■□□□ 1
USP42-201ENST00000306177 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
USP42-201ENST00000306177 CARMIL1Q5VZK9 1371 aa21.28■■□□□ 1
USP42-201ENST00000306177 FHAD1B1AJZ9 1412 aa21.22■□□□□ 0.99
USP42-201ENST00000306177 RGL3Q3MIN7 710 aa21.21■□□□□ 0.99
USP42-201ENST00000306177 SMARCA2P51531 1590 aa21.21■□□□□ 0.99
USP42-201ENST00000306177 ANP32BQ92688 251 aaKnown RBP21.21■□□□□ 0.99
USP42-201ENST00000306177 ABCC8Q09428 1581 aa21.18■□□□□ 0.98
USP42-201ENST00000306177 PPP1R15AO75807 674 aaPredicted RBP21.16■□□□□ 0.98
USP42-201ENST00000306177 CCNB3Q8WWL7 1395 aa21.15■□□□□ 0.98
USP42-201ENST00000306177 EIF4G1Q04637 1599 aaKnown RBP21.14■□□□□ 0.98
USP42-201ENST00000306177 SENP3Q9H4L4 574 aaPredicted RBP21.13■□□□□ 0.97
USP42-201ENST00000306177 IRX6P78412 446 aaPredicted RBP21.13■□□□□ 0.97
USP42-201ENST00000306177 CDCA8Q53HL2 280 aa21.12■□□□□ 0.97
USP42-201ENST00000306177 SIN3AQ96ST3 1273 aa21.09■□□□□ 0.97
USP42-201ENST00000306177 MYH16Q9H6N6 1097 aa21.08■□□□□ 0.97
USP42-201ENST00000306177 CARD11Q9BXL7 1154 aa21.08■□□□□ 0.97
USP42-201ENST00000306177 VPS8Q8N3P4 1428 aa21.07■□□□□ 0.96
USP42-201ENST00000306177 SCAF1Q9H7N4 1312 aaKnown RBP21.07■□□□□ 0.96
USP42-201ENST00000306177 TOP2AP11388 1531 aaKnown RBP21.06■□□□□ 0.96
USP42-201ENST00000306177 KNSTRNQ9Y448 316 aa21.05■□□□□ 0.96
USP42-201ENST00000306177 WIZO95785 1651 aa21.05■□□□□ 0.96
USP42-201ENST00000306177 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
USP42-201ENST00000306177 CFAP53Q96M91 514 aa21.04■□□□□ 0.96
USP42-201ENST00000306177 C14orf37Q86TY3 774 aa20.98■□□□□ 0.95
USP42-201ENST00000306177 TDRD9Q8NDG6 1382 aaKnown RBP20.98■□□□□ 0.95
USP42-201ENST00000306177 ARID4BQ4LE39 1312 aaPredicted RBP20.98■□□□□ 0.95
USP42-201ENST00000306177 NBR1Q14596 966 aa20.97■□□□□ 0.95
USP42-201ENST00000306177 ZBTB7CA1YPR0 619 aa20.95■□□□□ 0.94
USP42-201ENST00000306177 KANK4Q5T7N3 995 aaPredicted RBP20.95■□□□□ 0.94
USP42-201ENST00000306177 ARHGAP35Q9NRY4 1499 aa20.93■□□□□ 0.94
USP42-201ENST00000306177 CADPSQ9ULU8 1353 aa20.91■□□□□ 0.94
USP42-201ENST00000306177 SETD5Q9C0A6 1442 aa20.89■□□□□ 0.93
USP42-201ENST00000306177 TIMELESSQ9UNS1 1208 aa20.89■□□□□ 0.93
USP42-201ENST00000306177 CARMIL2Q6F5E8 1435 aa20.88■□□□□ 0.93
USP42-201ENST00000306177 ATAD2BQ9ULI0 1458 aa20.88■□□□□ 0.93
USP42-201ENST00000306177 DDRGK1Q96HY6 314 aa20.88■□□□□ 0.93
USP42-201ENST00000306177 PLEKHG5O94827 1062 aa20.87■□□□□ 0.93
USP42-201ENST00000306177 FMN1Q68DA7 1419 aa20.87■□□□□ 0.93
USP42-201ENST00000306177 SENP3-EIF4A1A0A087X0R7 540 aa20.87■□□□□ 0.93
USP42-201ENST00000306177 SUPT16HQ9Y5B9 1047 aaKnown RBP20.87■□□□□ 0.93
USP42-201ENST00000306177 BECN1Q14457 450 aa20.86■□□□□ 0.93
USP42-201ENST00000306177 PPM1GO15355 546 aaPredicted RBP20.86■□□□□ 0.93
USP42-201ENST00000306177 A0A0G2JS52 829 aa20.85■□□□□ 0.93
USP42-201ENST00000306177 POGKQ9P215 609 aa20.85■□□□□ 0.93
USP42-201ENST00000306177 DCAF11Q8TEB1 546 aa20.84■□□□□ 0.93
USP42-201ENST00000306177 NUDCQ9Y266 331 aa20.84■□□□□ 0.93
USP42-201ENST00000306177 MAPK8IP3Q9UPT6 1336 aa20.83■□□□□ 0.93
USP42-201ENST00000306177 SMARCA4P51532 1647 aa20.83■□□□□ 0.92
USP42-201ENST00000306177 EIF5BO60841 1220 aaKnown RBP20.82■□□□□ 0.92
USP42-201ENST00000306177 KANK1Q14678 1352 aa20.81■□□□□ 0.92
USP42-201ENST00000306177 FTSJ3Q8IY81 847 aaKnown RBP20.81■□□□□ 0.92
USP42-201ENST00000306177 ARXQ96QS3 562 aa20.8■□□□□ 0.92
USP42-201ENST00000306177 NEUROD2Q15784 382 aa20.79■□□□□ 0.92
USP42-201ENST00000306177 RAPGEF2Q9Y4G8 1499 aa20.79■□□□□ 0.92
USP42-201ENST00000306177 TMF1P82094 1093 aa20.79■□□□□ 0.92
USP42-201ENST00000306177 CC2D1BQ5T0F9 858 aaKnown RBP20.77■□□□□ 0.92
USP42-201ENST00000306177 PKD2Q13563 968 aa20.75■□□□□ 0.91
USP42-201ENST00000306177 HAP1P54257 671 aaPredicted RBP20.74■□□□□ 0.91
USP42-201ENST00000306177 PPP4R2Q9NY27 417 aa20.74■□□□□ 0.91
USP42-201ENST00000306177 RAB3GAP2Q9H2M9 1393 aa20.73■□□□□ 0.91
USP42-201ENST00000306177 FHOD3Q2V2M9 1422 aa20.73■□□□□ 0.91
USP42-201ENST00000306177 LAS1LQ9Y4W2 734 aaKnown RBP20.72■□□□□ 0.91
USP42-201ENST00000306177 TNNT2P45379 298 aaPredicted RBP20.72■□□□□ 0.91
USP42-201ENST00000306177 FOXD1Q16676 465 aa20.71■□□□□ 0.91
USP42-201ENST00000306177 CASC1Q6TDU7 716 aa20.69■□□□□ 0.9
USP42-201ENST00000306177 ANP32EQ9BTT0 268 aa20.69■□□□□ 0.9
USP42-201ENST00000306177 GOLGA6L22H0YM25 854 aa20.69■□□□□ 0.9
USP42-201ENST00000306177 NCLP19338 710 aaKnown RBP20.69■□□□□ 0.9
USP42-201ENST00000306177 PNNQ9H307 717 aaKnown RBP20.67■□□□□ 0.9
USP42-201ENST00000306177 HSPA5P11021 654 aaKnown RBP20.67■□□□□ 0.9
USP42-201ENST00000306177 EFCAB2Q5VUJ9 269 aa20.67■□□□□ 0.9
USP42-201ENST00000306177 CCER2I3L3R5 266 aa20.67■□□□□ 0.9
USP42-201ENST00000306177 MLECQ14165 292 aa20.67■□□□□ 0.9
USP42-201ENST00000306177 GGT6Q6P531 493 aa20.67■□□□□ 0.9
USP42-201ENST00000306177 U2SURPO15042 1029 aaKnown RBP20.66■□□□□ 0.9
USP42-201ENST00000306177 FRAT1Q92837 279 aaPredicted RBP20.66■□□□□ 0.9
USP42-201ENST00000306177 MPHOSPH9Q99550 1183 aa20.66■□□□□ 0.9
USP42-201ENST00000306177 CHMP4BQ9H444 224 aaKnown RBP20.66■□□□□ 0.9
USP42-201ENST00000306177 MS4A1P11836 297 aa20.65■□□□□ 0.9
USP42-201ENST00000306177 ANKRD30AQ9BXX3 1397 aa20.65■□□□□ 0.9
USP42-201ENST00000306177 HDGFP51858 240 aaKnown RBP20.64■□□□□ 0.89
USP42-201ENST00000306177 NUP155O75694 1391 aa20.64■□□□□ 0.89
USP42-201ENST00000306177 FANCD2Q9BXW9 1451 aa20.63■□□□□ 0.89
USP42-201ENST00000306177 RUSC2Q8N2Y8 1516 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms