RNA–Protein interactions for RNA: ENST00000303407.11

BRD3-201, Transcript of bromodomain containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene BRD3, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD3-201ENST00000303407 SALL2Q9Y467 1007 aaPredicted RBP22.13■■□□□ 1.13
BRD3-201ENST00000303407 MRS2Q9HD23 443 aa22.13■■□□□ 1.13
BRD3-201ENST00000303407 NPM1P06748 294 aaKnown RBP eCLIP22.12■■□□□ 1.13
BRD3-201ENST00000303407 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
BRD3-201ENST00000303407 EIF4G2P78344 907 aaKnown RBP eCLIP22.1■■□□□ 1.13
BRD3-201ENST00000303407 ABCC8Q09428 1581 aa22.09■■□□□ 1.13
BRD3-201ENST00000303407 STAG3Q9UJ98 1225 aa22.09■■□□□ 1.13
BRD3-201ENST00000303407 ESF1Q9H501 851 aaKnown RBP22.06■■□□□ 1.12
BRD3-201ENST00000303407 CCDC136Q96JN2 1154 aa22■■□□□ 1.11
BRD3-201ENST00000303407 WDR43Q15061 677 aaKnown RBP eCLIP21.99■■□□□ 1.11
BRD3-201ENST00000303407 PLEKHD1A6NEE1 506 aa21.99■■□□□ 1.11
BRD3-201ENST00000303407 IRX6P78412 446 aaPredicted RBP21.99■■□□□ 1.11
BRD3-201ENST00000303407 WIZO95785 1651 aa21.98■■□□□ 1.11
BRD3-201ENST00000303407 CUX2O14529 1486 aa21.96■■□□□ 1.11
BRD3-201ENST00000303407 CCNB3Q8WWL7 1395 aa21.94■■□□□ 1.1
BRD3-201ENST00000303407 KCNH8Q96L42 1107 aa21.93■■□□□ 1.1
BRD3-201ENST00000303407 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
BRD3-201ENST00000303407 SIN3AQ96ST3 1273 aa21.93■■□□□ 1.1
BRD3-201ENST00000303407 CFDP1Q9UEE9 299 aaPredicted RBP21.92■■□□□ 1.1
BRD3-201ENST00000303407 TOP2AP11388 1531 aaKnown RBP21.92■■□□□ 1.1
BRD3-201ENST00000303407 FHAD1B1AJZ9 1412 aa21.92■■□□□ 1.1
BRD3-201ENST00000303407 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.9■■□□□ 1.1
BRD3-201ENST00000303407 SMARCA2P51531 1590 aa21.89■■□□□ 1.1
BRD3-201ENST00000303407 VPS8Q8N3P4 1428 aa21.89■■□□□ 1.09
BRD3-201ENST00000303407 EIF4G1Q04637 1599 aaKnown RBP21.88■■□□□ 1.09
BRD3-201ENST00000303407 PLPPR3Q6T4P5 718 aa21.87■■□□□ 1.09
BRD3-201ENST00000303407 RGL3Q3MIN7 710 aa21.84■■□□□ 1.09
BRD3-201ENST00000303407 UPF2Q9HAU5 1272 aaKnown RBP21.83■■□□□ 1.09
BRD3-201ENST00000303407 ERCC6Q03468 1493 aa21.8■■□□□ 1.08
BRD3-201ENST00000303407 CARD11Q9BXL7 1154 aa21.77■■□□□ 1.07
BRD3-201ENST00000303407 KANK4Q5T7N3 995 aaPredicted RBP21.75■■□□□ 1.07
BRD3-201ENST00000303407 ARHGAP35Q9NRY4 1499 aa21.75■■□□□ 1.07
BRD3-201ENST00000303407 SETD5Q9C0A6 1442 aa21.74■■□□□ 1.07
BRD3-201ENST00000303407 HSP90AA1P07900 732 aaKnown RBP21.74■■□□□ 1.07
BRD3-201ENST00000303407 NBR1Q14596 966 aa21.72■■□□□ 1.07
BRD3-201ENST00000303407 SENP3Q9H4L4 574 aaPredicted RBP21.72■■□□□ 1.07
BRD3-201ENST00000303407 SENP3-EIF4A1A0A087X0R7 540 aa21.71■■□□□ 1.07
BRD3-201ENST00000303407 SUPT16HQ9Y5B9 1047 aaKnown RBP21.7■■□□□ 1.06
BRD3-201ENST00000303407 SMARCA4P51532 1647 aa21.66■■□□□ 1.06
BRD3-201ENST00000303407 KNSTRNQ9Y448 316 aa21.64■■□□□ 1.05
BRD3-201ENST00000303407 CDCA8Q53HL2 280 aa21.63■■□□□ 1.05
BRD3-201ENST00000303407 TIMELESSQ9UNS1 1208 aa21.62■■□□□ 1.05
BRD3-201ENST00000303407 PPP1R15AO75807 674 aaPredicted RBP21.58■■□□□ 1.05
BRD3-201ENST00000303407 RAB3GAP2Q9H2M9 1393 aa21.58■■□□□ 1.05
BRD3-201ENST00000303407 ANP32BQ92688 251 aaKnown RBP21.57■■□□□ 1.04
BRD3-201ENST00000303407 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
BRD3-201ENST00000303407 FMN1Q68DA7 1419 aa21.54■■□□□ 1.04
BRD3-201ENST00000303407 CFAP53Q96M91 514 aa21.53■■□□□ 1.04
BRD3-201ENST00000303407 PDS5BQ9NTI5 1447 aa21.53■■□□□ 1.04
BRD3-201ENST00000303407 ATAD2BQ9ULI0 1458 aa21.53■■□□□ 1.04
BRD3-201ENST00000303407 MYH16Q9H6N6 1097 aa21.52■■□□□ 1.04
BRD3-201ENST00000303407 DCAF11Q8TEB1 546 aa21.52■■□□□ 1.04
BRD3-201ENST00000303407 TDRD9Q8NDG6 1382 aaKnown RBP21.51■■□□□ 1.03
BRD3-201ENST00000303407 HSPA5P11021 654 aaKnown RBP21.51■■□□□ 1.03
BRD3-201ENST00000303407 CC2D1BQ5T0F9 858 aaKnown RBP21.51■■□□□ 1.03
BRD3-201ENST00000303407 RUSC2Q8N2Y8 1516 aa21.5■■□□□ 1.03
BRD3-201ENST00000303407 PPP4R2Q9NY27 417 aa21.49■■□□□ 1.03
BRD3-201ENST00000303407 CCER2I3L3R5 266 aa21.49■■□□□ 1.03
BRD3-201ENST00000303407 DDRGK1Q96HY6 314 aa21.49■■□□□ 1.03
BRD3-201ENST00000303407 FOXD1Q16676 465 aa21.47■■□□□ 1.03
BRD3-201ENST00000303407 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
BRD3-201ENST00000303407 FHOD3Q2V2M9 1422 aa21.45■■□□□ 1.02
BRD3-201ENST00000303407 TMF1P82094 1093 aa21.42■■□□□ 1.02
BRD3-201ENST00000303407 ARXQ96QS3 562 aa21.42■■□□□ 1.02
BRD3-201ENST00000303407 ZBTB7CA1YPR0 619 aa21.42■■□□□ 1.02
BRD3-201ENST00000303407 CARMIL2Q6F5E8 1435 aa21.41■■□□□ 1.02
BRD3-201ENST00000303407 PKD2Q13563 968 aa21.41■■□□□ 1.02
BRD3-201ENST00000303407 NEUROD2Q15784 382 aa21.4■■□□□ 1.02
BRD3-201ENST00000303407 MPHOSPH9Q99550 1183 aa21.4■■□□□ 1.02
BRD3-201ENST00000303407 KANK1Q14678 1352 aa21.4■■□□□ 1.02
BRD3-201ENST00000303407 PPM1GO15355 546 aaPredicted RBP21.39■■□□□ 1.02
BRD3-201ENST00000303407 C14orf37Q86TY3 774 aa21.39■■□□□ 1.02
BRD3-201ENST00000303407 BECN1Q14457 450 aa21.39■■□□□ 1.01
BRD3-201ENST00000303407 TNNT2P45379 298 aaPredicted RBP21.37■■□□□ 1.01
BRD3-201ENST00000303407 ARID4BQ4LE39 1312 aaPredicted RBP21.36■■□□□ 1.01
BRD3-201ENST00000303407 EIF5BO60841 1220 aaKnown RBP21.35■■□□□ 1.01
BRD3-201ENST00000303407 FTSJ3Q8IY81 847 aaKnown RBP21.35■■□□□ 1.01
BRD3-201ENST00000303407 ANP32EQ9BTT0 268 aa21.35■■□□□ 1.01
BRD3-201ENST00000303407 POGKQ9P215 609 aa21.35■■□□□ 1.01
BRD3-201ENST00000303407 B4GALNT3Q6L9W6 998 aa21.34■■□□□ 1.01
BRD3-201ENST00000303407 MAPK8IP3Q9UPT6 1336 aa21.34■■□□□ 1.01
BRD3-201ENST00000303407 PLEKHG5O94827 1062 aa21.34■■□□□ 1.01
BRD3-201ENST00000303407 NUDCQ9Y266 331 aa21.31■■□□□ 1
BRD3-201ENST00000303407 LAS1LQ9Y4W2 734 aaKnown RBP21.3■■□□□ 1
BRD3-201ENST00000303407 ANKRD30AQ9BXX3 1397 aa21.3■■□□□ 1
BRD3-201ENST00000303407 FRAT1Q92837 279 aaPredicted RBP21.28■■□□□ 1
BRD3-201ENST00000303407 NUP155O75694 1391 aa21.28■■□□□ 1
BRD3-201ENST00000303407 DHX57Q6P158 1386 aaKnown RBP21.28■■□□□ 1
BRD3-201ENST00000303407 ROCK2O75116 1388 aaKnown RBP21.27■■□□□ 1
BRD3-201ENST00000303407 KTN1Q86UP2 1357 aaKnown RBP21.25■□□□□ 0.99
BRD3-201ENST00000303407 FANCD2Q9BXW9 1451 aa21.25■□□□□ 0.99
BRD3-201ENST00000303407 RGS3P49796 1198 aa21.25■□□□□ 0.99
BRD3-201ENST00000303407 CCDC18Q5T9S5 1454 aa21.24■□□□□ 0.99
BRD3-201ENST00000303407 U2SURPO15042 1029 aaKnown RBP21.23■□□□□ 0.99
BRD3-201ENST00000303407 NOP58Q9Y2X3 529 aaKnown RBP21.2■□□□□ 0.99
BRD3-201ENST00000303407 L3MBTL2Q969R5 705 aa21.2■□□□□ 0.98
BRD3-201ENST00000303407 MORC1Q86VD1 984 aa21.18■□□□□ 0.98
BRD3-201ENST00000303407 HNRNPMP52272 730 aaKnown RBP eCLIP21.17■□□□□ 0.982e-6■■■■■ 30.5
BRD3-201ENST00000303407 CASC1Q6TDU7 716 aa21.16■□□□□ 0.98
BRD3-201ENST00000303407 SRPK2P78362 688 aaKnown RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms