RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 FTSJ3Q8IY81 847 aaKnown RBP11.35□□□□□ -0.59
NIPBL-201ENST00000282516 DDX10Q13206 875 aaKnown RBP11.35□□□□□ -0.59
NIPBL-201ENST00000282516 PLPPR3Q6T4P5 718 aa11.34□□□□□ -0.59
NIPBL-201ENST00000282516 CLSTN1O94985 981 aa11.32□□□□□ -0.6
NIPBL-201ENST00000282516 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
NIPBL-201ENST00000282516 FGD1P98174 961 aa11.31□□□□□ -0.6
NIPBL-201ENST00000282516 KIAA2012Q0VF49 1180 aa11.31□□□□□ -0.6
NIPBL-201ENST00000282516 TPRNQ4KMQ1 711 aa11.31□□□□□ -0.6
NIPBL-201ENST00000282516 CHMP4BQ9H444 224 aaKnown RBP11.31□□□□□ -0.6
NIPBL-201ENST00000282516 CFAP53Q96M91 514 aa11.3□□□□□ -0.6
NIPBL-201ENST00000282516 C14orf37Q86TY3 774 aa11.3□□□□□ -0.6
NIPBL-201ENST00000282516 NPM1P06748 294 aaKnown RBP eCLIP11.3□□□□□ -0.6
NIPBL-201ENST00000282516 NOC3LQ8WTT2 800 aaKnown RBP11.29□□□□□ -0.6
NIPBL-201ENST00000282516 GOLGA6L4A6NEF3 574 aa11.29□□□□□ -0.6
NIPBL-201ENST00000282516 MSNP26038 577 aaKnown RBP11.28□□□□□ -0.6
NIPBL-201ENST00000282516 PLCB2Q00722 1185 aa11.28□□□□□ -0.6
NIPBL-201ENST00000282516 ZBTB7CA1YPR0 619 aa11.28□□□□□ -0.6
NIPBL-201ENST00000282516 PNNQ9H307 717 aaKnown RBP11.28□□□□□ -0.6
NIPBL-201ENST00000282516 HSP90AB1P08238 724 aaKnown RBP11.27□□□□□ -0.6
NIPBL-201ENST00000282516 PPP1R15AO75807 674 aaPredicted RBP11.27□□□□□ -0.61
NIPBL-201ENST00000282516 IRX6P78412 446 aaPredicted RBP11.27□□□□□ -0.61
NIPBL-201ENST00000282516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.27□□□□□ -0.611e-6■■■■□ 20.4
NIPBL-201ENST00000282516 NPHP1O15259 732 aa11.25□□□□□ -0.61
NIPBL-201ENST00000282516 KCNJ4P48050 445 aa11.25□□□□□ -0.61
NIPBL-201ENST00000282516 DCAF1Q9Y4B6 1507 aa11.25□□□□□ -0.61
NIPBL-201ENST00000282516 DRC7Q8IY82 874 aa11.24□□□□□ -0.61
NIPBL-201ENST00000282516 GOLGA2Q08379 1002 aa11.24□□□□□ -0.61
NIPBL-201ENST00000282516 NCBP3Q53F19 620 aaKnown RBP11.24□□□□□ -0.61
NIPBL-201ENST00000282516 HAP1P54257 671 aaPredicted RBP11.23□□□□□ -0.61
NIPBL-201ENST00000282516 OS9Q13438 667 aaPredicted RBP11.23□□□□□ -0.61
NIPBL-201ENST00000282516 HSCBQ8IWL3 235 aa11.23□□□□□ -0.61
NIPBL-201ENST00000282516 CDCA8Q53HL2 280 aa11.22□□□□□ -0.61
NIPBL-201ENST00000282516 NOP58Q9Y2X3 529 aaKnown RBP11.22□□□□□ -0.61
NIPBL-201ENST00000282516 MS4A1P11836 297 aa11.22□□□□□ -0.61
NIPBL-201ENST00000282516 LAS1LQ9Y4W2 734 aaKnown RBP11.22□□□□□ -0.61
NIPBL-201ENST00000282516 AMER1Q5JTC6 1135 aaPredicted RBP11.22□□□□□ -0.61
NIPBL-201ENST00000282516 NAP1L2Q9ULW6 460 aaPredicted RBP11.22□□□□□ -0.61
NIPBL-201ENST00000282516 KDM2AQ9Y2K7 1162 aa11.21□□□□□ -0.62
NIPBL-201ENST00000282516 TNNT3P45378 269 aaPredicted RBP11.21□□□□□ -0.62
NIPBL-201ENST00000282516 MCCP23508 829 aa11.21□□□□□ -0.62
NIPBL-201ENST00000282516 USP35Q9P2H5 1018 aa11.21□□□□□ -0.62
NIPBL-201ENST00000282516 CSRNP3Q8WYN3 585 aa11.2□□□□□ -0.62
NIPBL-201ENST00000282516 PTMSP20962 102 aa11.2□□□□□ -0.62
NIPBL-201ENST00000282516 MAPK8IP3Q9UPT6 1336 aa11.2□□□□□ -0.62
NIPBL-201ENST00000282516 RTN4Q9NQC3 1192 aaKnown RBP11.2□□□□□ -0.62
NIPBL-201ENST00000282516 GNL2Q13823 731 aaKnown RBP11.19□□□□□ -0.62
NIPBL-201ENST00000282516 GOLGA6L1Q8N7Z2 621 aa11.19□□□□□ -0.62
NIPBL-201ENST00000282516 KNSTRNQ9Y448 316 aa11.19□□□□□ -0.62
NIPBL-201ENST00000282516 EIF4G2P78344 907 aaKnown RBP eCLIP11.19□□□□□ -0.621e-6■■■■□ 23.6
NIPBL-201ENST00000282516 TAOK2Q9UL54 1235 aa11.18□□□□□ -0.62
NIPBL-201ENST00000282516 PABPN1Q86U42 306 aaKnown RBP eCLIP11.18□□□□□ -0.62
NIPBL-201ENST00000282516 TSPY4P0CV99 314 aa11.18□□□□□ -0.62
NIPBL-201ENST00000282516 TSPY10P0CW01 314 aa11.18□□□□□ -0.62
NIPBL-201ENST00000282516 CFAP44Q96MT7 982 aa11.17□□□□□ -0.62
NIPBL-201ENST00000282516 MTUS2Q5JR59 1369 aa11.17□□□□□ -0.62
NIPBL-201ENST00000282516 PRM3Q9NNZ6 103 aa11.16□□□□□ -0.62
NIPBL-201ENST00000282516 A0A0U1RQG5 324 aaPredicted RBP11.15□□□□□ -0.62
NIPBL-201ENST00000282516 ABCC9O60706 1549 aa11.15□□□□□ -0.62
NIPBL-201ENST00000282516 RGS3P49796 1198 aa11.14□□□□□ -0.63
NIPBL-201ENST00000282516 PLEKHG5O94827 1062 aa11.14□□□□□ -0.63
NIPBL-201ENST00000282516 CHIC2Q9UKJ5 165 aa11.14□□□□□ -0.63
NIPBL-201ENST00000282516 NUDCQ9Y266 331 aa11.13□□□□□ -0.63
NIPBL-201ENST00000282516 HTATSF1O43719 755 aaKnown RBP11.12□□□□□ -0.63
NIPBL-201ENST00000282516 SYAP1Q96A49 352 aaPredicted RBP11.12□□□□□ -0.63
NIPBL-201ENST00000282516 SETQ01105 290 aaPredicted RBP11.12□□□□□ -0.63
NIPBL-201ENST00000282516 CCDC180Q9P1Z9 1646 aa11.11□□□□□ -0.63
NIPBL-201ENST00000282516 ISY1Q9ULR0 285 aaKnown RBP11.11□□□□□ -0.63
NIPBL-201ENST00000282516 CCDC34Q96HJ3 373 aa11.11□□□□□ -0.63
NIPBL-201ENST00000282516 GBP4Q96PP9 640 aa11.11□□□□□ -0.63
NIPBL-201ENST00000282516 PPP4R2Q9NY27 417 aa11.11□□□□□ -0.63
NIPBL-201ENST00000282516 TPM4P67936 248 aa11.1□□□□□ -0.63
NIPBL-201ENST00000282516 CALRP27797 417 aaKnown RBP11.1□□□□□ -0.63
NIPBL-201ENST00000282516 RSF1Q96T23 1441 aaPredicted RBP11.09□□□□□ -0.63
NIPBL-201ENST00000282516 MIER1Q8N108 512 aa11.08□□□□□ -0.64
NIPBL-201ENST00000282516 KIAA1211Q6ZU35 1233 aa11.08□□□□□ -0.64
NIPBL-201ENST00000282516 FRAT1Q92837 279 aaPredicted RBP11.06□□□□□ -0.64
NIPBL-201ENST00000282516 SCRIBQ14160 1630 aa11.05□□□□□ -0.64
NIPBL-201ENST00000282516 ARID4BQ4LE39 1312 aaPredicted RBP11.05□□□□□ -0.64
NIPBL-201ENST00000282516 CLIP1P30622 1438 aa11.03□□□□□ -0.64
NIPBL-201ENST00000282516 DEKP35659 375 aaKnown RBP11.03□□□□□ -0.64
NIPBL-201ENST00000282516 SUPT16HQ9Y5B9 1047 aaKnown RBP11.02□□□□□ -0.64
NIPBL-201ENST00000282516 PHF14O94880 888 aa11.02□□□□□ -0.65
NIPBL-201ENST00000282516 NEUROD2Q15784 382 aa11.02□□□□□ -0.65
NIPBL-201ENST00000282516 TPM3P06753 285 aa11.02□□□□□ -0.65
NIPBL-201ENST00000282516 CSPP1Q1MSJ5 1256 aa11.02□□□□□ -0.65
NIPBL-201ENST00000282516 ARID3AQ99856 593 aa11.01□□□□□ -0.65
NIPBL-201ENST00000282516 CEP89Q96ST8 783 aa11.01□□□□□ -0.65
NIPBL-201ENST00000282516 POGKQ9P215 609 aa11.01□□□□□ -0.65
NIPBL-201ENST00000282516 GPATCH3Q96I76 525 aa11□□□□□ -0.65
NIPBL-201ENST00000282516 SENP3Q9H4L4 574 aaPredicted RBP11□□□□□ -0.65
NIPBL-201ENST00000282516 LMOD2Q6P5Q4 547 aa10.99□□□□□ -0.65
NIPBL-201ENST00000282516 HIRIP3Q9BW71 556 aaPredicted RBP10.98□□□□□ -0.65
NIPBL-201ENST00000282516 RRP7BPQ9NSQ0 103 aa10.98□□□□□ -0.65
NIPBL-201ENST00000282516 CARD11Q9BXL7 1154 aa10.97□□□□□ -0.65
NIPBL-201ENST00000282516 PDE4CQ08493 712 aa10.97□□□□□ -0.65
NIPBL-201ENST00000282516 RASSF8Q8NHQ8 419 aa10.96□□□□□ -0.65
NIPBL-201ENST00000282516 CCDC70Q6NSX1 233 aa10.96□□□□□ -0.65
NIPBL-201ENST00000282516 SPRYD3Q8NCJ5 442 aa10.96□□□□□ -0.66
NIPBL-201ENST00000282516 U2SURPO15042 1029 aaKnown RBP10.96□□□□□ -0.66
NIPBL-201ENST00000282516 IPO8O15397 1037 aaKnown RBP10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms