RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 CANXP27824 592 aaKnown RBP21.06■□□□□ 0.96
TIMP3-201ENST00000266085 ZBTB47Q9UFB7 747 aaPredicted RBP21.05■□□□□ 0.96
TIMP3-201ENST00000266085 HIRIP3Q9BW71 556 aaPredicted RBP21.02■□□□□ 0.96
TIMP3-201ENST00000266085 ABCC8Q09428 1581 aa20.99■□□□□ 0.95
TIMP3-201ENST00000266085 HNRNPUQ00839 825 aaKnown RBP eCLIP20.97■□□□□ 0.95
TIMP3-201ENST00000266085 FAM9BQ8IZU0 186 aa20.97■□□□□ 0.95
TIMP3-201ENST00000266085 PDS5BQ9NTI5 1447 aa20.95■□□□□ 0.94
TIMP3-201ENST00000266085 TDRD9Q8NDG6 1382 aaKnown RBP20.93■□□□□ 0.94
TIMP3-201ENST00000266085 WIZO95785 1651 aa20.93■□□□□ 0.94
TIMP3-201ENST00000266085 BCL11AQ9H165 835 aa20.93■□□□□ 0.94
TIMP3-201ENST00000266085 RGL3Q3MIN7 710 aa20.92■□□□□ 0.94
TIMP3-201ENST00000266085 EIF4G2P78344 907 aaKnown RBP eCLIP20.91■□□□□ 0.94
TIMP3-201ENST00000266085 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
TIMP3-201ENST00000266085 TMC1Q8TDI8 760 aa20.9■□□□□ 0.94
TIMP3-201ENST00000266085 SALL2Q9Y467 1007 aaPredicted RBP20.89■□□□□ 0.93
TIMP3-201ENST00000266085 SENP3Q9H4L4 574 aaPredicted RBP20.89■□□□□ 0.93
TIMP3-201ENST00000266085 EIF4G1Q04637 1599 aaKnown RBP20.88■□□□□ 0.93
TIMP3-201ENST00000266085 TOP2AP11388 1531 aaKnown RBP20.87■□□□□ 0.93
TIMP3-201ENST00000266085 CADPSQ9ULU8 1353 aa20.87■□□□□ 0.93
TIMP3-201ENST00000266085 ATAD2BQ9ULI0 1458 aa20.87■□□□□ 0.93
TIMP3-201ENST00000266085 FKBP8Q14318 412 aa20.83■□□□□ 0.93
TIMP3-201ENST00000266085 MRS2Q9HD23 443 aa20.83■□□□□ 0.92
TIMP3-201ENST00000266085 CCNB3Q8WWL7 1395 aa20.81■□□□□ 0.92
TIMP3-201ENST00000266085 MIER1Q8N108 512 aa20.81■□□□□ 0.92
TIMP3-201ENST00000266085 SIN3AQ96ST3 1273 aa20.78■□□□□ 0.92
TIMP3-201ENST00000266085 PPP1R15AO75807 674 aaPredicted RBP20.77■□□□□ 0.92
TIMP3-201ENST00000266085 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.91
TIMP3-201ENST00000266085 KANK4Q5T7N3 995 aaPredicted RBP20.75■□□□□ 0.91
TIMP3-201ENST00000266085 ARID4BQ4LE39 1312 aaPredicted RBP20.75■□□□□ 0.91
TIMP3-201ENST00000266085 WDR43Q15061 677 aaKnown RBP eCLIP20.72■□□□□ 0.91
TIMP3-201ENST00000266085 SMARCA4P51532 1647 aa20.72■□□□□ 0.91
TIMP3-201ENST00000266085 ANP32AP39687 249 aaKnown RBP20.7■□□□□ 0.9
TIMP3-201ENST00000266085 CARD11Q9BXL7 1154 aa20.67■□□□□ 0.9
TIMP3-201ENST00000266085 CARMIL2Q6F5E8 1435 aa20.66■□□□□ 0.9
TIMP3-201ENST00000266085 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.6■□□□□ 0.89
TIMP3-201ENST00000266085 NPM2Q86SE8 214 aaKnown RBP20.6■□□□□ 0.89
TIMP3-201ENST00000266085 FMN1Q68DA7 1419 aa20.6■□□□□ 0.89
TIMP3-201ENST00000266085 CCDC136Q96JN2 1154 aa20.59■□□□□ 0.89
TIMP3-201ENST00000266085 ARHGAP35Q9NRY4 1499 aa20.57■□□□□ 0.88
TIMP3-201ENST00000266085 RAPGEF2Q9Y4G8 1499 aa20.57■□□□□ 0.88
TIMP3-201ENST00000266085 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
TIMP3-201ENST00000266085 PLEKHG5O94827 1062 aa20.56■□□□□ 0.88
TIMP3-201ENST00000266085 CDCA8Q53HL2 280 aa20.56■□□□□ 0.88
TIMP3-201ENST00000266085 C14orf37Q86TY3 774 aa20.55■□□□□ 0.88
TIMP3-201ENST00000266085 FANCD2Q9BXW9 1451 aa20.55■□□□□ 0.88
TIMP3-201ENST00000266085 JPH4Q96JJ6 628 aa20.53■□□□□ 0.88
TIMP3-201ENST00000266085 DCAF11Q8TEB1 546 aa20.52■□□□□ 0.88
TIMP3-201ENST00000266085 KNSTRNQ9Y448 316 aa20.52■□□□□ 0.88
TIMP3-201ENST00000266085 RUSC2Q8N2Y8 1516 aa20.52■□□□□ 0.88
TIMP3-201ENST00000266085 FHOD3Q2V2M9 1422 aa20.52■□□□□ 0.88
TIMP3-201ENST00000266085 SETD5Q9C0A6 1442 aa20.52■□□□□ 0.87
TIMP3-201ENST00000266085 TRHP20396 242 aaPredicted RBP20.51■□□□□ 0.87
TIMP3-201ENST00000266085 SENP3-EIF4A1A0A087X0R7 540 aa20.5■□□□□ 0.87
TIMP3-201ENST00000266085 MLECQ14165 292 aa20.5■□□□□ 0.87
TIMP3-201ENST00000266085 UPF2Q9HAU5 1272 aaKnown RBP20.49■□□□□ 0.87
TIMP3-201ENST00000266085 EFCAB2Q5VUJ9 269 aa20.49■□□□□ 0.87
TIMP3-201ENST00000266085 GGT6Q6P531 493 aa20.48■□□□□ 0.87
TIMP3-201ENST00000266085 PKD2Q13563 968 aa20.47■□□□□ 0.87
TIMP3-201ENST00000266085 IRX6P78412 446 aaPredicted RBP20.47■□□□□ 0.87
TIMP3-201ENST00000266085 ZBTB7CA1YPR0 619 aa20.46■□□□□ 0.87
TIMP3-201ENST00000266085 FOXD1Q16676 465 aa20.46■□□□□ 0.87
TIMP3-201ENST00000266085 TIMELESSQ9UNS1 1208 aa20.46■□□□□ 0.87
TIMP3-201ENST00000266085 POGKQ9P215 609 aa20.46■□□□□ 0.87
TIMP3-201ENST00000266085 KANK1Q14678 1352 aa20.45■□□□□ 0.86
TIMP3-201ENST00000266085 PPM1GO15355 546 aaPredicted RBP20.42■□□□□ 0.86
TIMP3-201ENST00000266085 CFAP53Q96M91 514 aa20.41■□□□□ 0.86
TIMP3-201ENST00000266085 HSP90AA1P07900 732 aaKnown RBP20.41■□□□□ 0.86
TIMP3-201ENST00000266085 RAB3GAP2Q9H2M9 1393 aa20.4■□□□□ 0.86
TIMP3-201ENST00000266085 NCAPD3P42695 1498 aa20.38■□□□□ 0.85
TIMP3-201ENST00000266085 MPHOSPH9Q99550 1183 aa20.37■□□□□ 0.85
TIMP3-201ENST00000266085 NUP155O75694 1391 aa20.37■□□□□ 0.85
TIMP3-201ENST00000266085 HNRNPMP52272 730 aaKnown RBP eCLIP20.36■□□□□ 0.85
TIMP3-201ENST00000266085 ANKRD30AQ9BXX3 1397 aa20.34■□□□□ 0.85
TIMP3-201ENST00000266085 A0A0G2JS52 829 aa20.33■□□□□ 0.85
TIMP3-201ENST00000266085 IGF1RP08069 1367 aa20.33■□□□□ 0.85
TIMP3-201ENST00000266085 TNNT2P45379 298 aaPredicted RBP20.33■□□□□ 0.84
TIMP3-201ENST00000266085 TMF1P82094 1093 aa20.33■□□□□ 0.84
TIMP3-201ENST00000266085 FGD5Q6ZNL6 1462 aa20.32■□□□□ 0.84
TIMP3-201ENST00000266085 NEUROD2Q15784 382 aa20.31■□□□□ 0.84
TIMP3-201ENST00000266085 CC2D1BQ5T0F9 858 aaKnown RBP20.31■□□□□ 0.84
TIMP3-201ENST00000266085 KIF3BO15066 747 aa20.3■□□□□ 0.84
TIMP3-201ENST00000266085 RAD54L2Q9Y4B4 1467 aa20.29■□□□□ 0.84
TIMP3-201ENST00000266085 HSPA5P11021 654 aaKnown RBP20.28■□□□□ 0.84
TIMP3-201ENST00000266085 LMOD2Q6P5Q4 547 aa20.28■□□□□ 0.84
TIMP3-201ENST00000266085 SAFB2Q14151 953 aaKnown RBP eCLIP20.28■□□□□ 0.84
TIMP3-201ENST00000266085 CCDC18Q5T9S5 1454 aa20.27■□□□□ 0.84
TIMP3-201ENST00000266085 MYH16Q9H6N6 1097 aa20.27■□□□□ 0.84
TIMP3-201ENST00000266085 HAP1P54257 671 aaPredicted RBP20.26■□□□□ 0.83
TIMP3-201ENST00000266085 GAPVD1Q14C86 1478 aa20.26■□□□□ 0.83
TIMP3-201ENST00000266085 HDGFP51858 240 aaKnown RBP20.26■□□□□ 0.83
TIMP3-201ENST00000266085 RSPH4AQ5TD94 716 aa20.25■□□□□ 0.83
TIMP3-201ENST00000266085 SPAG9O60271 1321 aaKnown RBP20.25■□□□□ 0.83
TIMP3-201ENST00000266085 NUDCQ9Y266 331 aa20.25■□□□□ 0.83
TIMP3-201ENST00000266085 PTPRGP23470 1445 aa20.24■□□□□ 0.83
TIMP3-201ENST00000266085 SUPT16HQ9Y5B9 1047 aaKnown RBP20.23■□□□□ 0.83
TIMP3-201ENST00000266085 SRPK2P78362 688 aaKnown RBP20.23■□□□□ 0.83
TIMP3-201ENST00000266085 STK26Q9P289 416 aa20.22■□□□□ 0.83
TIMP3-201ENST00000266085 MAPK8IP3Q9UPT6 1336 aa20.21■□□□□ 0.83
TIMP3-201ENST00000266085 L3MBTL2Q969R5 705 aa20.19■□□□□ 0.82
TIMP3-201ENST00000266085 U2SURPO15042 1029 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms