RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 MROH2BQ7Z745 1585 aa18.97■□□□□ 0.63
CDH3-201ENST00000264012 SOGA1O94964 1423 aa18.95■□□□□ 0.62
CDH3-201ENST00000264012 EIF4G2P78344 907 aaKnown RBP eCLIP18.95■□□□□ 0.62
CDH3-201ENST00000264012 SALL2Q9Y467 1007 aaPredicted RBP18.95■□□□□ 0.62
CDH3-201ENST00000264012 PLPPR3Q6T4P5 718 aa18.94■□□□□ 0.62
CDH3-201ENST00000264012 MRS2Q9HD23 443 aa18.93■□□□□ 0.62
CDH3-201ENST00000264012 CFDP1Q9UEE9 299 aaPredicted RBP18.92■□□□□ 0.62
CDH3-201ENST00000264012 SCAF1Q9H7N4 1312 aaKnown RBP18.92■□□□□ 0.62
CDH3-201ENST00000264012 CCDC88BA6NC98 1476 aa18.89■□□□□ 0.62
CDH3-201ENST00000264012 ANP32AP39687 249 aaKnown RBP18.89■□□□□ 0.61
CDH3-201ENST00000264012 CARMIL1Q5VZK9 1371 aa18.87■□□□□ 0.61
CDH3-201ENST00000264012 CUX2O14529 1486 aa18.87■□□□□ 0.61
CDH3-201ENST00000264012 ERCC6Q03468 1493 aa18.84■□□□□ 0.61
CDH3-201ENST00000264012 WDR43Q15061 677 aaKnown RBP eCLIP18.83■□□□□ 0.6
CDH3-201ENST00000264012 NPM2Q86SE8 214 aaKnown RBP18.83■□□□□ 0.6
CDH3-201ENST00000264012 RGL3Q3MIN7 710 aa18.81■□□□□ 0.6
CDH3-201ENST00000264012 FHAD1B1AJZ9 1412 aa18.81■□□□□ 0.6
CDH3-201ENST00000264012 ABCC8Q09428 1581 aa18.79■□□□□ 0.6
CDH3-201ENST00000264012 CCNB3Q8WWL7 1395 aa18.77■□□□□ 0.6
CDH3-201ENST00000264012 SMARCA2P51531 1590 aa18.76■□□□□ 0.59
CDH3-201ENST00000264012 CCDC136Q96JN2 1154 aa18.76■□□□□ 0.59
CDH3-201ENST00000264012 SIN3AQ96ST3 1273 aa18.76■□□□□ 0.59
CDH3-201ENST00000264012 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.73■□□□□ 0.59
CDH3-201ENST00000264012 VPS8Q8N3P4 1428 aa18.71■□□□□ 0.59
CDH3-201ENST00000264012 SENP3Q9H4L4 574 aaPredicted RBP18.7■□□□□ 0.58
CDH3-201ENST00000264012 EIF4G1Q04637 1599 aaKnown RBP18.69■□□□□ 0.58
CDH3-201ENST00000264012 IRX6P78412 446 aaPredicted RBP18.68■□□□□ 0.58
CDH3-201ENST00000264012 CARD11Q9BXL7 1154 aa18.68■□□□□ 0.58
CDH3-201ENST00000264012 TOP2AP11388 1531 aaKnown RBP18.66■□□□□ 0.58
CDH3-201ENST00000264012 WIZO95785 1651 aa18.66■□□□□ 0.58
CDH3-201ENST00000264012 PPP1R15AO75807 674 aaPredicted RBP18.66■□□□□ 0.58
CDH3-201ENST00000264012 UPF2Q9HAU5 1272 aaKnown RBP18.64■□□□□ 0.57
CDH3-201ENST00000264012 KANK4Q5T7N3 995 aaPredicted RBP18.63■□□□□ 0.57
CDH3-201ENST00000264012 PDS5BQ9NTI5 1447 aa18.61■□□□□ 0.57
CDH3-201ENST00000264012 CDCA8Q53HL2 280 aa18.61■□□□□ 0.57
CDH3-201ENST00000264012 TDRD9Q8NDG6 1382 aaKnown RBP18.6■□□□□ 0.57
CDH3-201ENST00000264012 KNSTRNQ9Y448 316 aa18.58■□□□□ 0.56
CDH3-201ENST00000264012 HSP90AA1P07900 732 aaKnown RBP18.57■□□□□ 0.56
CDH3-201ENST00000264012 ARHGAP35Q9NRY4 1499 aa18.55■□□□□ 0.56
CDH3-201ENST00000264012 SETD5Q9C0A6 1442 aa18.55■□□□□ 0.56
CDH3-201ENST00000264012 TIMELESSQ9UNS1 1208 aa18.55■□□□□ 0.56
CDH3-201ENST00000264012 SENP3-EIF4A1A0A087X0R7 540 aa18.54■□□□□ 0.56
CDH3-201ENST00000264012 CADPSQ9ULU8 1353 aa18.54■□□□□ 0.56
CDH3-201ENST00000264012 ARID4BQ4LE39 1312 aaPredicted RBP18.52■□□□□ 0.56
CDH3-201ENST00000264012 ATAD2BQ9ULI0 1458 aa18.52■□□□□ 0.56
CDH3-201ENST00000264012 CFAP53Q96M91 514 aa18.5■□□□□ 0.55
CDH3-201ENST00000264012 FMN1Q68DA7 1419 aa18.49■□□□□ 0.55
CDH3-201ENST00000264012 DCAF11Q8TEB1 546 aa18.49■□□□□ 0.55
CDH3-201ENST00000264012 CARMIL2Q6F5E8 1435 aa18.47■□□□□ 0.55
CDH3-201ENST00000264012 C14orf37Q86TY3 774 aa18.46■□□□□ 0.55
CDH3-201ENST00000264012 SUPT16HQ9Y5B9 1047 aaKnown RBP18.46■□□□□ 0.55
CDH3-201ENST00000264012 SMARCA4P51532 1647 aa18.45■□□□□ 0.54
CDH3-201ENST00000264012 PLEKHG5O94827 1062 aa18.43■□□□□ 0.54
CDH3-201ENST00000264012 RAPGEF2Q9Y4G8 1499 aa18.43■□□□□ 0.54
CDH3-201ENST00000264012 ZBTB7CA1YPR0 619 aa18.42■□□□□ 0.54
CDH3-201ENST00000264012 MYH16Q9H6N6 1097 aa18.42■□□□□ 0.54
CDH3-201ENST00000264012 RAB3GAP2Q9H2M9 1393 aa18.42■□□□□ 0.54
CDH3-201ENST00000264012 PPM1GO15355 546 aaPredicted RBP18.41■□□□□ 0.54
CDH3-201ENST00000264012 PKD2Q13563 968 aa18.41■□□□□ 0.54
CDH3-201ENST00000264012 POGKQ9P215 609 aa18.41■□□□□ 0.54
CDH3-201ENST00000264012 KANK1Q14678 1352 aa18.4■□□□□ 0.54
CDH3-201ENST00000264012 FOXD1Q16676 465 aa18.4■□□□□ 0.54
CDH3-201ENST00000264012 CC2D1BQ5T0F9 858 aaKnown RBP18.39■□□□□ 0.53
CDH3-201ENST00000264012 FHOD3Q2V2M9 1422 aa18.38■□□□□ 0.53
CDH3-201ENST00000264012 TMF1P82094 1093 aa18.38■□□□□ 0.53
CDH3-201ENST00000264012 NEUROD2Q15784 382 aa18.37■□□□□ 0.53
CDH3-201ENST00000264012 HSPA5P11021 654 aaKnown RBP18.37■□□□□ 0.53
CDH3-201ENST00000264012 ANP32BQ92688 251 aaKnown RBP18.36■□□□□ 0.53
CDH3-201ENST00000264012 NBR1Q14596 966 aa18.35■□□□□ 0.53
CDH3-201ENST00000264012 MPHOSPH9Q99550 1183 aa18.35■□□□□ 0.53
CDH3-201ENST00000264012 RUSC2Q8N2Y8 1516 aa18.34■□□□□ 0.53
CDH3-201ENST00000264012 TNNT2P45379 298 aaPredicted RBP18.34■□□□□ 0.53
CDH3-201ENST00000264012 NUDCQ9Y266 331 aa18.33■□□□□ 0.53
CDH3-201ENST00000264012 MAPK8IP3Q9UPT6 1336 aa18.32■□□□□ 0.52
CDH3-201ENST00000264012 EFCAB2Q5VUJ9 269 aa18.31■□□□□ 0.52
CDH3-201ENST00000264012 NUP155O75694 1391 aa18.3■□□□□ 0.52
CDH3-201ENST00000264012 GGT6Q6P531 493 aa18.3■□□□□ 0.52
CDH3-201ENST00000264012 CCER2I3L3R5 266 aa18.3■□□□□ 0.52
CDH3-201ENST00000264012 ANP32EQ9BTT0 268 aa18.3■□□□□ 0.52
CDH3-201ENST00000264012 ANKRD30AQ9BXX3 1397 aa18.29■□□□□ 0.52
CDH3-201ENST00000264012 A0A0G2JS52 829 aa18.28■□□□□ 0.52
CDH3-201ENST00000264012 MLECQ14165 292 aa18.27■□□□□ 0.52
CDH3-201ENST00000264012 PPP4R2Q9NY27 417 aa18.27■□□□□ 0.52
CDH3-201ENST00000264012 FANCD2Q9BXW9 1451 aa18.27■□□□□ 0.52
CDH3-201ENST00000264012 FTSJ3Q8IY81 847 aaKnown RBP18.27■□□□□ 0.51
CDH3-201ENST00000264012 JPH4Q96JJ6 628 aa18.25■□□□□ 0.51
CDH3-201ENST00000264012 LAS1LQ9Y4W2 734 aaKnown RBP18.25■□□□□ 0.51
CDH3-201ENST00000264012 U2SURPO15042 1029 aaKnown RBP18.24■□□□□ 0.51
CDH3-201ENST00000264012 HNRNPMP52272 730 aaKnown RBP eCLIP18.22■□□□□ 0.51
CDH3-201ENST00000264012 SRPK2P78362 688 aaKnown RBP18.22■□□□□ 0.51
CDH3-201ENST00000264012 DDRGK1Q96HY6 314 aa18.22■□□□□ 0.51
CDH3-201ENST00000264012 FRAT1Q92837 279 aaPredicted RBP18.21■□□□□ 0.51
CDH3-201ENST00000264012 CCDC18Q5T9S5 1454 aa18.21■□□□□ 0.51
CDH3-201ENST00000264012 SAFB2Q14151 953 aaKnown RBP eCLIP18.21■□□□□ 0.51
CDH3-201ENST00000264012 BECN1Q14457 450 aa18.2■□□□□ 0.5
CDH3-201ENST00000264012 HAP1P54257 671 aaPredicted RBP18.2■□□□□ 0.5
CDH3-201ENST00000264012 L3MBTL2Q969R5 705 aa18.2■□□□□ 0.5
CDH3-201ENST00000264012 LMOD2Q6P5Q4 547 aa18.19■□□□□ 0.5
CDH3-201ENST00000264012 HDGFP51858 240 aaKnown RBP18.19■□□□□ 0.5
CDH3-201ENST00000264012 ROCK2O75116 1388 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms