RNA–Protein interactions for RNA: ENST00000238961.8

SLF2-201, Transcript of SMC5-SMC6 complex localization factor 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SLF2, Length 7,288 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLF2-201ENST00000238961 FKBP8Q14318 412 aa13.56□□□□□ -0.24
SLF2-201ENST00000238961 GOLGA2Q08379 1002 aa13.56□□□□□ -0.24
SLF2-201ENST00000238961 FAM9BQ8IZU0 186 aa13.56□□□□□ -0.24
SLF2-201ENST00000238961 CCDC136Q96JN2 1154 aa13.56□□□□□ -0.24
SLF2-201ENST00000238961 NAP1L2Q9ULW6 460 aaPredicted RBP13.56□□□□□ -0.24
SLF2-201ENST00000238961 NOC3LQ8WTT2 800 aaKnown RBP13.55□□□□□ -0.24
SLF2-201ENST00000238961 PDE4CQ08493 712 aa13.53□□□□□ -0.24
SLF2-201ENST00000238961 PNNQ9H307 717 aaKnown RBP13.53□□□□□ -0.24
SLF2-201ENST00000238961 BECN1Q14457 450 aa13.53□□□□□ -0.24
SLF2-201ENST00000238961 FBXO3Q9UK99 471 aa13.52□□□□□ -0.25
SLF2-201ENST00000238961 CASC1Q6TDU7 716 aa13.52□□□□□ -0.25
SLF2-201ENST00000238961 NPM1P06748 294 aaKnown RBP eCLIP13.52□□□□□ -0.25
SLF2-201ENST00000238961 NRDCO43847 1150 aa13.51□□□□□ -0.25
SLF2-201ENST00000238961 FGD1P98174 961 aa13.51□□□□□ -0.25
SLF2-201ENST00000238961 NAP1L5Q96NT1 182 aaPredicted RBP13.5□□□□□ -0.25
SLF2-201ENST00000238961 L1TD1Q5T7N2 865 aaKnown RBP13.5□□□□□ -0.25
SLF2-201ENST00000238961 ANP32EQ9BTT0 268 aa13.5□□□□□ -0.25
SLF2-201ENST00000238961 HNRNPUQ00839 825 aaKnown RBP eCLIP13.49□□□□□ -0.25
SLF2-201ENST00000238961 KIAA2012Q0VF49 1180 aa13.49□□□□□ -0.25
SLF2-201ENST00000238961 TMC1Q8TDI8 760 aa13.47□□□□□ -0.25
SLF2-201ENST00000238961 SCRIBQ14160 1630 aa13.45□□□□□ -0.26
SLF2-201ENST00000238961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.45□□□□□ -0.268e-7■■□□□ 11.4
SLF2-201ENST00000238961 A0A0U1RQG5 324 aaPredicted RBP13.44□□□□□ -0.26
SLF2-201ENST00000238961 ERICH6BQ5W0A0 696 aa13.43□□□□□ -0.26
SLF2-201ENST00000238961 P3H3Q8IVL6 736 aa13.43□□□□□ -0.26
SLF2-201ENST00000238961 CHAF1AQ13111 956 aaPredicted RBP13.42□□□□□ -0.26
SLF2-201ENST00000238961 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
SLF2-201ENST00000238961 PPP1R15AO75807 674 aaPredicted RBP13.41□□□□□ -0.26
SLF2-201ENST00000238961 CCDC180Q9P1Z9 1646 aa13.41□□□□□ -0.26
SLF2-201ENST00000238961 KCNJ4P48050 445 aa13.41□□□□□ -0.26
SLF2-201ENST00000238961 ANO8Q9HCE9 1232 aaPredicted RBP13.41□□□□□ -0.26
SLF2-201ENST00000238961 OS9Q13438 667 aaPredicted RBP13.4□□□□□ -0.26
SLF2-201ENST00000238961 DDRGK1Q96HY6 314 aa13.39□□□□□ -0.27
SLF2-201ENST00000238961 DRC7Q8IY82 874 aa13.38□□□□□ -0.27
SLF2-201ENST00000238961 GOLGA6L4A6NEF3 574 aa13.38□□□□□ -0.27
SLF2-201ENST00000238961 PPM1GO15355 546 aaPredicted RBP13.35□□□□□ -0.27
SLF2-201ENST00000238961 GNL2Q13823 731 aaKnown RBP13.34□□□□□ -0.27
SLF2-201ENST00000238961 LAS1LQ9Y4W2 734 aaKnown RBP13.34□□□□□ -0.27
SLF2-201ENST00000238961 TNNT3P45378 269 aaPredicted RBP13.33□□□□□ -0.27
SLF2-201ENST00000238961 CALRP27797 417 aaKnown RBP13.32□□□□□ -0.28
SLF2-201ENST00000238961 KDM2AQ9Y2K7 1162 aa13.32□□□□□ -0.28
SLF2-201ENST00000238961 FTSJ3Q8IY81 847 aaKnown RBP13.3□□□□□ -0.28
SLF2-201ENST00000238961 CNKSR2Q8WXI2 1034 aa13.29□□□□□ -0.28
SLF2-201ENST00000238961 IRX6P78412 446 aaPredicted RBP13.29□□□□□ -0.28
SLF2-201ENST00000238961 WWC1Q8IX03 1113 aa13.29□□□□□ -0.28
SLF2-201ENST00000238961 TONSLQ96HA7 1378 aa13.29□□□□□ -0.28
SLF2-201ENST00000238961 ARID4BQ4LE39 1312 aaPredicted RBP13.29□□□□□ -0.28
SLF2-201ENST00000238961 TMX4Q9H1E5 349 aaPredicted RBP13.28□□□□□ -0.28
SLF2-201ENST00000238961 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
SLF2-201ENST00000238961 CEP89Q96ST8 783 aa13.28□□□□□ -0.28
SLF2-201ENST00000238961 HSP90AB1P08238 724 aaKnown RBP13.28□□□□□ -0.28
SLF2-201ENST00000238961 ZCCHC6Q5VYS8 1495 aaKnown RBP13.26□□□□□ -0.29
SLF2-201ENST00000238961 EIF4G2P78344 907 aaKnown RBP eCLIP13.26□□□□□ -0.29
SLF2-201ENST00000238961 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.25□□□□□ -0.29
SLF2-201ENST00000238961 GOLGA6L1Q8N7Z2 621 aa13.24□□□□□ -0.29
SLF2-201ENST00000238961 DDX10Q13206 875 aaKnown RBP13.23□□□□□ -0.29
SLF2-201ENST00000238961 MSNP26038 577 aaKnown RBP13.23□□□□□ -0.29
SLF2-201ENST00000238961 PATL2C9JE40 543 aaKnown RBP13.23□□□□□ -0.29
SLF2-201ENST00000238961 MRS2Q9HD23 443 aa13.22□□□□□ -0.29
SLF2-201ENST00000238961 ARID3AQ99856 593 aa13.22□□□□□ -0.29
SLF2-201ENST00000238961 ACIN1Q9UKV3 1341 aaKnown RBP13.22□□□□□ -0.29
SLF2-201ENST00000238961 CFAP53Q96M91 514 aa13.2□□□□□ -0.3
SLF2-201ENST00000238961 G3V3G9 751 aa13.2□□□□□ -0.3
SLF2-201ENST00000238961 DCAF8Q5TAQ9 597 aa13.2□□□□□ -0.3
SLF2-201ENST00000238961 RB1CC1Q8TDY2 1594 aa13.19□□□□□ -0.3
SLF2-201ENST00000238961 VPS53Q5VIR6 699 aa13.18□□□□□ -0.3
SLF2-201ENST00000238961 CREBRFQ8IUR6 639 aa13.18□□□□□ -0.3
SLF2-201ENST00000238961 NEUROD2Q15784 382 aa13.15□□□□□ -0.3
SLF2-201ENST00000238961 MAPK8IP3Q9UPT6 1336 aa13.14□□□□□ -0.31
SLF2-201ENST00000238961 RASSF8Q8NHQ8 419 aa13.14□□□□□ -0.31
SLF2-201ENST00000238961 SETQ01105 290 aaPredicted RBP13.14□□□□□ -0.31
SLF2-201ENST00000238961 MCCP23508 829 aa13.12□□□□□ -0.31
SLF2-201ENST00000238961 CHIC2Q9UKJ5 165 aa13.12□□□□□ -0.31
SLF2-201ENST00000238961 ZNF330Q9Y3S2 320 aaPredicted RBP13.12□□□□□ -0.31
SLF2-201ENST00000238961 SENP3-EIF4A1A0A087X0R7 540 aa13.11□□□□□ -0.31
SLF2-201ENST00000238961 TPM4P67936 248 aa13.1□□□□□ -0.31
SLF2-201ENST00000238961 USP35Q9P2H5 1018 aa13.1□□□□□ -0.31
SLF2-201ENST00000238961 MARCH6O60337 910 aa13.1□□□□□ -0.31
SLF2-201ENST00000238961 HSP90B1P14625 803 aaKnown RBP13.1□□□□□ -0.31
SLF2-201ENST00000238961 RRP12Q5JTH9 1297 aaKnown RBP13.09□□□□□ -0.31
SLF2-201ENST00000238961 RGS3P49796 1198 aa13.09□□□□□ -0.31
SLF2-201ENST00000238961 FRAT1Q92837 279 aaPredicted RBP13.09□□□□□ -0.31
SLF2-201ENST00000238961 TSPY4P0CV99 314 aa13.07□□□□□ -0.32
SLF2-201ENST00000238961 TSPY10P0CW01 314 aa13.07□□□□□ -0.32
SLF2-201ENST00000238961 HSCBQ8IWL3 235 aa13.07□□□□□ -0.32
SLF2-201ENST00000238961 SPRYD3Q8NCJ5 442 aa13.07□□□□□ -0.32
SLF2-201ENST00000238961 CCDC9Q9Y3X0 531 aaKnown RBP13.07□□□□□ -0.32
SLF2-201ENST00000238961 CHMP4BQ9H444 224 aaKnown RBP13.06□□□□□ -0.32
SLF2-201ENST00000238961 SOX12O15370 315 aa13.05□□□□□ -0.32
SLF2-201ENST00000238961 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.05□□□□□ -0.32
SLF2-201ENST00000238961 TPM3P06753 285 aa13.05□□□□□ -0.32
SLF2-201ENST00000238961 NUDCQ9Y266 331 aa13.04□□□□□ -0.32
SLF2-201ENST00000238961 TAF7LQ5H9L4 462 aa13.04□□□□□ -0.32
SLF2-201ENST00000238961 CCDC34Q96HJ3 373 aa13.04□□□□□ -0.32
SLF2-201ENST00000238961 PES1O00541 588 aaKnown RBP13.04□□□□□ -0.32
SLF2-201ENST00000238961 KIAA1211Q6ZU35 1233 aa13.04□□□□□ -0.32
SLF2-201ENST00000238961 POGKQ9P215 609 aa13.03□□□□□ -0.32
SLF2-201ENST00000238961 TCEAL9Q9UHQ7 104 aa13.03□□□□□ -0.32
SLF2-201ENST00000238961 HTATSF1O43719 755 aaKnown RBP13.01□□□□□ -0.33
SLF2-201ENST00000238961 GORABQ5T7V8 394 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms