RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 SUPT16HQ9Y5B9 1047 aaKnown RBP17.73■□□□□ 0.43
NEK4-201ENST00000233027 TSPY4P0CV99 314 aa17.72■□□□□ 0.43
NEK4-201ENST00000233027 TSPY10P0CW01 314 aa17.72■□□□□ 0.43
NEK4-201ENST00000233027 CEP162Q5TB80 1403 aa17.71■□□□□ 0.43
NEK4-201ENST00000233027 ANP32EQ9BTT0 268 aa17.71■□□□□ 0.43
NEK4-201ENST00000233027 CCDC180Q9P1Z9 1646 aa17.7■□□□□ 0.42
NEK4-201ENST00000233027 DDRGK1Q96HY6 314 aa17.69■□□□□ 0.42
NEK4-201ENST00000233027 MYH16Q9H6N6 1097 aa17.68■□□□□ 0.42
NEK4-201ENST00000233027 BECN1Q14457 450 aa17.65■□□□□ 0.42
NEK4-201ENST00000233027 GOLGA3Q08378 1498 aa17.64■□□□□ 0.41
NEK4-201ENST00000233027 NPM1P06748 294 aaKnown RBP eCLIP17.63■□□□□ 0.41
NEK4-201ENST00000233027 RGL3Q3MIN7 710 aa17.63■□□□□ 0.41
NEK4-201ENST00000233027 PLEKHG5O94827 1062 aa17.62■□□□□ 0.41
NEK4-201ENST00000233027 LAS1LQ9Y4W2 734 aaKnown RBP17.61■□□□□ 0.41
NEK4-201ENST00000233027 TRIM44Q96DX7 344 aaPredicted RBP17.6■□□□□ 0.41
NEK4-201ENST00000233027 ZBTB7CA1YPR0 619 aa17.6■□□□□ 0.41
NEK4-201ENST00000233027 RTN4Q9NQC3 1192 aaKnown RBP17.6■□□□□ 0.41
NEK4-201ENST00000233027 NCLP19338 710 aaKnown RBP17.59■□□□□ 0.41
NEK4-201ENST00000233027 TPRNQ4KMQ1 711 aa17.58■□□□□ 0.4
NEK4-201ENST00000233027 SIN3AQ96ST3 1273 aa17.58■□□□□ 0.4
NEK4-201ENST00000233027 CHMP7Q8WUX9 453 aaPredicted RBP17.54■□□□□ 0.4
NEK4-201ENST00000233027 KCNH8Q96L42 1107 aa17.52■□□□□ 0.4
NEK4-201ENST00000233027 NEUROD2Q15784 382 aa17.51■□□□□ 0.39
NEK4-201ENST00000233027 RSF1Q96T23 1441 aaPredicted RBP17.51■□□□□ 0.39
NEK4-201ENST00000233027 CARD11Q9BXL7 1154 aa17.51■□□□□ 0.39
NEK4-201ENST00000233027 PPP4R2Q9NY27 417 aa17.51■□□□□ 0.39
NEK4-201ENST00000233027 GOLGA6L22H0YM25 854 aa17.5■□□□□ 0.39
NEK4-201ENST00000233027 C14orf37Q86TY3 774 aa17.5■□□□□ 0.39
NEK4-201ENST00000233027 RGS3P49796 1198 aa17.5■□□□□ 0.39
NEK4-201ENST00000233027 A0A0G2JS52 829 aa17.5■□□□□ 0.39
NEK4-201ENST00000233027 B4GALNT3Q6L9W6 998 aa17.5■□□□□ 0.39
NEK4-201ENST00000233027 NOP58Q9Y2X3 529 aaKnown RBP17.49■□□□□ 0.39
NEK4-201ENST00000233027 KNSTRNQ9Y448 316 aa17.49■□□□□ 0.39
NEK4-201ENST00000233027 FTSJ3Q8IY81 847 aaKnown RBP17.48■□□□□ 0.39
NEK4-201ENST00000233027 PPM1GO15355 546 aaPredicted RBP17.47■□□□□ 0.39
NEK4-201ENST00000233027 PTMAP06454 111 aaKnown RBP17.46■□□□□ 0.39
NEK4-201ENST00000233027 EEA1Q15075 1411 aa17.45■□□□□ 0.38
NEK4-201ENST00000233027 CC2D1BQ5T0F9 858 aaKnown RBP17.45■□□□□ 0.38
NEK4-201ENST00000233027 CFAP53Q96M91 514 aa17.44■□□□□ 0.38
NEK4-201ENST00000233027 TNIKQ9UKE5 1360 aa17.44■□□□□ 0.38
NEK4-201ENST00000233027 PPP1R15AO75807 674 aaPredicted RBP17.43■□□□□ 0.38
NEK4-201ENST00000233027 FRAT1Q92837 279 aaPredicted RBP17.43■□□□□ 0.38
NEK4-201ENST00000233027 WRNQ14191 1432 aaPredicted RBP eCLIP17.43■□□□□ 0.38
NEK4-201ENST00000233027 NAP1L5Q96NT1 182 aaPredicted RBP17.43■□□□□ 0.38
NEK4-201ENST00000233027 TNNT2P45379 298 aaPredicted RBP17.41■□□□□ 0.38
NEK4-201ENST00000233027 PLEKHD1A6NEE1 506 aa17.41■□□□□ 0.38
NEK4-201ENST00000233027 DNTTIP2Q5QJE6 756 aaKnown RBP17.41■□□□□ 0.38
NEK4-201ENST00000233027 CFDP1Q9UEE9 299 aaPredicted RBP17.4■□□□□ 0.38
NEK4-201ENST00000233027 CASC1Q6TDU7 716 aa17.39■□□□□ 0.37
NEK4-201ENST00000233027 CEP164Q9UPV0 1460 aa17.39■□□□□ 0.37
NEK4-201ENST00000233027 CDCA8Q53HL2 280 aa17.36■□□□□ 0.37
NEK4-201ENST00000233027 CDK11BP21127 795 aaKnown RBP17.36■□□□□ 0.37
NEK4-201ENST00000233027 ERICH6BQ5W0A0 696 aa17.35■□□□□ 0.37
NEK4-201ENST00000233027 MAPK8IP3Q9UPT6 1336 aa17.34■□□□□ 0.37
NEK4-201ENST00000233027 PLCB2Q00722 1185 aa17.33■□□□□ 0.36
NEK4-201ENST00000233027 TAOK2Q9UL54 1235 aa17.33■□□□□ 0.36
NEK4-201ENST00000233027 HSP90AB1P08238 724 aaKnown RBP17.32■□□□□ 0.36
NEK4-201ENST00000233027 KIF27Q86VH2 1401 aa17.32■□□□□ 0.36
NEK4-201ENST00000233027 RBM19Q9Y4C8 960 aaKnown RBP17.31■□□□□ 0.36
NEK4-201ENST00000233027 ZRSR1Q15695 479 aaKnown RBP17.31■□□□□ 0.36
NEK4-201ENST00000233027 SPRYD3Q8NCJ5 442 aa17.31■□□□□ 0.36
NEK4-201ENST00000233027 DEKP35659 375 aaKnown RBP17.31■□□□□ 0.36
NEK4-201ENST00000233027 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
NEK4-201ENST00000233027 U2SURPO15042 1029 aaKnown RBP17.27■□□□□ 0.36
NEK4-201ENST00000233027 BAZ1BQ9UIG0 1483 aaKnown RBP17.26■□□□□ 0.35
NEK4-201ENST00000233027 NUDCQ9Y266 331 aa17.25■□□□□ 0.35
NEK4-201ENST00000233027 DCAF11Q8TEB1 546 aa17.25■□□□□ 0.35
NEK4-201ENST00000233027 RB1CC1Q8TDY2 1594 aa17.24■□□□□ 0.35
NEK4-201ENST00000233027 HSPA5P11021 654 aaKnown RBP17.23■□□□□ 0.35
NEK4-201ENST00000233027 POGKQ9P215 609 aa17.22■□□□□ 0.35
NEK4-201ENST00000233027 SOGA1O94964 1423 aa17.21■□□□□ 0.35
NEK4-201ENST00000233027 TULP1O00294 542 aaPredicted RBP17.21■□□□□ 0.35
NEK4-201ENST00000233027 HSCBQ8IWL3 235 aa17.2■□□□□ 0.34
NEK4-201ENST00000233027 CCER2I3L3R5 266 aa17.2■□□□□ 0.34
NEK4-201ENST00000233027 TMF1P82094 1093 aa17.19■□□□□ 0.34
NEK4-201ENST00000233027 OS9Q13438 667 aaPredicted RBP17.19■□□□□ 0.34
NEK4-201ENST00000233027 FOXD1Q16676 465 aa17.18■□□□□ 0.34
NEK4-201ENST00000233027 ARID4BQ4LE39 1312 aaPredicted RBP17.18■□□□□ 0.34
NEK4-201ENST00000233027 HAP1P54257 671 aaPredicted RBP17.17■□□□□ 0.34
NEK4-201ENST00000233027 EIF4G1Q04637 1599 aaKnown RBP17.16■□□□□ 0.34
NEK4-201ENST00000233027 NAP1L2Q9ULW6 460 aaPredicted RBP17.16■□□□□ 0.34
NEK4-201ENST00000233027 SETD5Q9C0A6 1442 aa17.15■□□□□ 0.34
NEK4-201ENST00000233027 LMOD2Q6P5Q4 547 aa17.14■□□□□ 0.34
NEK4-201ENST00000233027 MS4A1P11836 297 aa17.14■□□□□ 0.33
NEK4-201ENST00000233027 KCNJ4P48050 445 aa17.13■□□□□ 0.33
NEK4-201ENST00000233027 FGD1P98174 961 aa17.13■□□□□ 0.33
NEK4-201ENST00000233027 KANK4Q5T7N3 995 aaPredicted RBP17.12■□□□□ 0.33
NEK4-201ENST00000233027 SOX12O15370 315 aa17.11■□□□□ 0.33
NEK4-201ENST00000233027 SAFB2Q14151 953 aaKnown RBP eCLIP17.11■□□□□ 0.33
NEK4-201ENST00000233027 CHMP4BQ9H444 224 aaKnown RBP17.11■□□□□ 0.33
NEK4-201ENST00000233027 L1TD1Q5T7N2 865 aaKnown RBP17.1■□□□□ 0.33
NEK4-201ENST00000233027 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
NEK4-201ENST00000233027 TSHZ2Q9NRE2 1034 aa17.1■□□□□ 0.33
NEK4-201ENST00000233027 MSNP26038 577 aaKnown RBP17.1■□□□□ 0.33
NEK4-201ENST00000233027 MORC1Q86VD1 984 aa17.1■□□□□ 0.33
NEK4-201ENST00000233027 APBB1O00213 710 aa17.08■□□□□ 0.32
NEK4-201ENST00000233027 GOLGA6L6A8MZA4 724 aa17.08■□□□□ 0.32
NEK4-201ENST00000233027 GZF1Q9H116 711 aaPredicted RBP17.08■□□□□ 0.32
NEK4-201ENST00000233027 ARHGAP35Q9NRY4 1499 aa17.07■□□□□ 0.32
NEK4-201ENST00000233027 SRPK2P78362 688 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms