RNA–Protein interactions for RNA: ENST00000191018.9

CTSA-201, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,898 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-201ENST00000191018 ADAMTS12P58397 1594 aa28.73■■■□□ 2.19
CTSA-201ENST00000191018 FHAD1B1AJZ9 1412 aa28.71■■■□□ 2.19
CTSA-201ENST00000191018 EFCAB5A4FU69 1503 aa28.7■■■□□ 2.19
CTSA-201ENST00000191018 APLP2Q06481 763 aa28.7■■■□□ 2.19
CTSA-201ENST00000191018 TTBK1Q5TCY1 1321 aaPredicted RBP28.7■■■□□ 2.18
CTSA-201ENST00000191018 EIF4G3O43432 1585 aaKnown RBP28.67■■■□□ 2.18
CTSA-201ENST00000191018 SAMD9Q5K651 1589 aa28.58■■■□□ 2.16
CTSA-201ENST00000191018 MAP3K1Q13233 1512 aa28.55■■■□□ 2.16
CTSA-201ENST00000191018 SNAPC4Q5SXM2 1469 aa28.53■■■□□ 2.16
CTSA-201ENST00000191018 FHOD3Q2V2M9 1422 aa28.52■■■□□ 2.16
CTSA-201ENST00000191018 PCF11O94913 1555 aaKnown RBP28.5■■■□□ 2.15
CTSA-201ENST00000191018 TIAM1Q13009 1591 aa28.49■■■□□ 2.15
CTSA-201ENST00000191018 KANK4Q5T7N3 995 aaPredicted RBP28.48■■■□□ 2.15
CTSA-201ENST00000191018 MAGI1Q96QZ7 1491 aaPredicted RBP28.47■■■□□ 2.15
CTSA-201ENST00000191018 P3H3Q8IVL6 736 aa28.47■■■□□ 2.15
CTSA-201ENST00000191018 IQGAP2Q13576 1575 aa28.47■■■□□ 2.15
CTSA-201ENST00000191018 CFAP43Q8NDM7 1665 aa28.43■■■□□ 2.14
CTSA-201ENST00000191018 FYCO1Q9BQS8 1478 aa28.43■■■□□ 2.14
CTSA-201ENST00000191018 GRIN2AQ12879 1464 aa28.42■■■□□ 2.14
CTSA-201ENST00000191018 FMN1Q68DA7 1419 aa28.42■■■□□ 2.14
CTSA-201ENST00000191018 CASKIN1Q8WXD9 1431 aa28.41■■■□□ 2.14
CTSA-201ENST00000191018 SYNJ2O15056 1496 aa28.36■■■□□ 2.13
CTSA-201ENST00000191018 KIAA0586Q9BVV6 1533 aa28.35■■■□□ 2.13
CTSA-201ENST00000191018 UGGT2Q9NYU1 1516 aa28.35■■■□□ 2.13
CTSA-201ENST00000191018 LRRC9Q6ZRR7 1453 aa28.33■■■□□ 2.13
CTSA-201ENST00000191018 ZEB1P37275 1124 aaPredicted RBP28.31■■■□□ 2.12
CTSA-201ENST00000191018 RRBP1Q9P2E9 1410 aaKnown RBP28.29■■■□□ 2.12
CTSA-201ENST00000191018 CEP170Q5SW79 1584 aa28.25■■■□□ 2.11
CTSA-201ENST00000191018 LRRIQ1Q96JM4 1722 aa28.25■■■□□ 2.11
CTSA-201ENST00000191018 CHMP7Q8WUX9 453 aaPredicted RBP28.22■■■□□ 2.11
CTSA-201ENST00000191018 NUP160Q12769 1436 aa28.2■■■□□ 2.1
CTSA-201ENST00000191018 KIAA0556O60303 1618 aa28.19■■■□□ 2.1
CTSA-201ENST00000191018 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.19■■■□□ 2.1
CTSA-201ENST00000191018 DISP1Q96F81 1524 aa28.18■■■□□ 2.1
CTSA-201ENST00000191018 ATP1B4Q9UN42 357 aaPredicted RBP28.17■■■□□ 2.1
CTSA-201ENST00000191018 HNRNPUL2Q1KMD3 747 aaKnown RBP28.15■■■□□ 2.1
CTSA-201ENST00000191018 CCNB3Q8WWL7 1395 aa28.13■■■□□ 2.09
CTSA-201ENST00000191018 HECW1Q76N89 1606 aa28.12■■■□□ 2.09
CTSA-201ENST00000191018 PHLDB1Q86UU1 1377 aa28.09■■■□□ 2.09
CTSA-201ENST00000191018 CCER1Q8TC90 406 aaPredicted RBP28.09■■■□□ 2.09
CTSA-201ENST00000191018 FBLN2P98095 1184 aa28.08■■■□□ 2.09
CTSA-201ENST00000191018 CCDC18Q5T9S5 1454 aa28.07■■■□□ 2.08
CTSA-201ENST00000191018 EHBP1L1Q8N3D4 1523 aa28.01■■■□□ 2.07
CTSA-201ENST00000191018 CHD1O14646 1710 aa28.01■■■□□ 2.07
CTSA-201ENST00000191018 MTUS2Q5JR59 1369 aa28■■■□□ 2.07
CTSA-201ENST00000191018 EPRSP07814 1512 aaKnown RBP28■■■□□ 2.07
CTSA-201ENST00000191018 SUPT6HQ7KZ85 1726 aaKnown RBP27.96■■■□□ 2.07
CTSA-201ENST00000191018 MAGI3Q5TCQ9 1506 aa27.96■■■□□ 2.07
CTSA-201ENST00000191018 JPH4Q96JJ6 628 aa27.95■■■□□ 2.07
CTSA-201ENST00000191018 RAPGEF6Q8TEU7 1601 aa27.95■■■□□ 2.07
CTSA-201ENST00000191018 CARMIL2Q6F5E8 1435 aa27.94■■■□□ 2.06
CTSA-201ENST00000191018 ARHGEF11O15085 1522 aa27.91■■■□□ 2.06
CTSA-201ENST00000191018 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.91■■■□□ 2.06
CTSA-201ENST00000191018 CDK13Q14004 1512 aaKnown RBP27.9■■■□□ 2.06
CTSA-201ENST00000191018 NCOA2Q15596 1464 aa27.9■■■□□ 2.06
CTSA-201ENST00000191018 NUP153P49790 1475 aaKnown RBP27.89■■■□□ 2.05
CTSA-201ENST00000191018 FGD6Q6ZV73 1430 aa27.87■■■□□ 2.05
CTSA-201ENST00000191018 MYOM3Q5VTT5 1437 aa27.82■■■□□ 2.04
CTSA-201ENST00000191018 SHROOM2Q13796 1616 aa27.81■■■□□ 2.04
CTSA-201ENST00000191018 PLB1Q6P1J6 1458 aa27.79■■■□□ 2.04
CTSA-201ENST00000191018 FAM50AQ14320 339 aaKnown RBP27.78■■■□□ 2.04
CTSA-201ENST00000191018 ABCA8O94911 1581 aa27.76■■■□□ 2.03
CTSA-201ENST00000191018 ITGAEP38570 1179 aa27.76■■■□□ 2.03
CTSA-201ENST00000191018 PRG4Q92954 1404 aaPredicted RBP27.75■■■□□ 2.03
CTSA-201ENST00000191018 PTPN23Q9H3S7 1636 aa27.71■■■□□ 2.03
CTSA-201ENST00000191018 DHX57Q6P158 1386 aaKnown RBP27.71■■■□□ 2.03
CTSA-201ENST00000191018 ARID3CA6NKF2 412 aa27.7■■■□□ 2.02
CTSA-201ENST00000191018 TCOF1Q13428 1488 aaKnown RBP27.67■■■□□ 2.02
CTSA-201ENST00000191018 SETD5Q9C0A6 1442 aa27.66■■■□□ 2.02
CTSA-201ENST00000191018 CLASP1Q7Z460 1538 aa27.66■■■□□ 2.02
CTSA-201ENST00000191018 CLSPNQ9HAW4 1339 aa27.66■■■□□ 2.02
CTSA-201ENST00000191018 RAB3GAP2Q9H2M9 1393 aa27.66■■■□□ 2.02
CTSA-201ENST00000191018 CDK11AQ9UQ88 783 aaPredicted RBP27.65■■■□□ 2.02
CTSA-201ENST00000191018 MIA2Q96PC5 1412 aa27.65■■■□□ 2.02
CTSA-201ENST00000191018 TROQ12816 1431 aaPredicted RBP27.63■■■□□ 2.01
CTSA-201ENST00000191018 ADCY10Q96PN6 1610 aa27.62■■■□□ 2.01
CTSA-201ENST00000191018 PTPRGP23470 1445 aa27.62■■■□□ 2.01
CTSA-201ENST00000191018 PTPRKQ15262 1439 aa27.59■■■□□ 2.01
CTSA-201ENST00000191018 ATP10BO94823 1461 aa27.57■■■□□ 2
CTSA-201ENST00000191018 ERCC6L2Q5T890 1561 aa27.56■■■□□ 2
CTSA-201ENST00000191018 KIF14Q15058 1648 aa27.52■■■□□ 2
CTSA-201ENST00000191018 HFM1A2PYH4 1435 aa27.51■■□□□ 1.99
CTSA-201ENST00000191018 ITSN2Q9NZM3 1697 aa27.5■■□□□ 1.99
CTSA-201ENST00000191018 UACAQ9BZF9 1416 aa27.49■■□□□ 1.99
CTSA-201ENST00000191018 MAPKBP1O60336 1514 aa27.44■■□□□ 1.98
CTSA-201ENST00000191018 NAIPQ13075 1403 aa27.43■■□□□ 1.98
CTSA-201ENST00000191018 GPATCH8Q9UKJ3 1502 aaKnown RBP27.43■■□□□ 1.98
CTSA-201ENST00000191018 PLEKHD1A6NEE1 506 aa27.42■■□□□ 1.98
CTSA-201ENST00000191018 ABCC2Q92887 1545 aa27.42■■□□□ 1.98
CTSA-201ENST00000191018 AKNAQ7Z591 1439 aa27.42■■□□□ 1.98
CTSA-201ENST00000191018 DNMT1P26358 1616 aaKnown RBP27.41■■□□□ 1.98
CTSA-201ENST00000191018 GCC2Q8IWJ2 1684 aa27.41■■□□□ 1.98
CTSA-201ENST00000191018 ABCC10Q5T3U5 1492 aa27.4■■□□□ 1.98
CTSA-201ENST00000191018 CDC42BPAQ5VT25 1732 aa27.39■■□□□ 1.97
CTSA-201ENST00000191018 DAPK1P53355 1430 aa27.35■■□□□ 1.97
CTSA-201ENST00000191018 CAMSAP2Q08AD1 1489 aa27.34■■□□□ 1.97
CTSA-201ENST00000191018 UHRF1BP1LA0JNW5 1464 aa27.33■■□□□ 1.97
CTSA-201ENST00000191018 ABCC5O15440 1437 aa27.32■■□□□ 1.96
CTSA-201ENST00000191018 ZNF644Q9H582 1327 aaPredicted RBP27.31■■□□□ 1.96
CTSA-201ENST00000191018 CFDP1Q9UEE9 299 aaPredicted RBP27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms