RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Gm13697A2AK42 830 aa13.94□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Csrnp3P59055 597 aa13.94□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Ttbk1Q6PCN3 1308 aa13.93□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Calr4Q3TQS0 420 aa13.92□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Cecr2E9Q2Z1 1453 aa13.92□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Zbtb4Q5F293 982 aa13.91□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Aebp2Q9Z248 504 aaKnown RBP13.91□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Synj1Q8CHC4 1574 aa13.9□□□□□ -0.18
Ccdc40-201ENSMUST00000035935 Mrs2Q5NCE8 434 aa13.88□□□□□ -0.19
Ccdc40-201ENSMUST00000035935 Atp1b4Q99ME6 356 aa13.87□□□□□ -0.19
Ccdc40-201ENSMUST00000035935 Smarca4Q3TKT4 1613 aaKnown RBP13.86□□□□□ -0.19
Ccdc40-201ENSMUST00000035935 Atad2bE9Q166 1460 aaKnown RBP13.86□□□□□ -0.19
Ccdc40-201ENSMUST00000035935 Cttnbp2B9EJA2 1648 aa13.84□□□□□ -0.19
Ccdc40-201ENSMUST00000035935 Cwc22Q8C5N3 908 aaKnown RBP13.83□□□□□ -0.2
Ccdc40-201ENSMUST00000035935 Mtus2Q3UHD3 1353 aa13.81□□□□□ -0.2
Ccdc40-201ENSMUST00000035935 Arhgap27A2AB59 869 aa13.81□□□□□ -0.2
Ccdc40-201ENSMUST00000035935 CntlnA2AM05 1397 aa13.8□□□□□ -0.2
Ccdc40-201ENSMUST00000035935 Fyco1Q8VDC1 1437 aa13.79□□□□□ -0.2
Ccdc40-201ENSMUST00000035935 Rgl3Q3UYI5 709 aa13.79□□□□□ -0.2
Ccdc40-201ENSMUST00000035935 Wdr43Q6ZQL4 677 aaKnown RBP13.77□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Rapgef2Q8CHG7 1496 aa13.77□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Ppp4r2Q0VGB7 417 aa13.76□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Kif27Q7M6Z4 1394 aa13.75□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Gm13695A2AK44 830 aa13.74□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Aebp1Q640N1 1128 aa13.74□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Arhgap35Q91YM2 1499 aa13.74□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Phldb1Q6PDH0 1371 aaKnown RBP13.73□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Gm38655A0A286YDK6 273 aa13.73□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Polr3glQ8R0C0 218 aa13.73□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Baz1bQ9Z277 1479 aa13.72□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Carmil1Q6EDY6 1374 aa13.72□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Prdm10Q3UTQ7 1184 aa13.71□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Card11Q8CIS0 1159 aa13.71□□□□□ -0.21
Ccdc40-201ENSMUST00000035935 Cux2P70298 1426 aa13.71□□□□□ -0.22
Ccdc40-201ENSMUST00000035935 DaxxO35613 739 aa13.69□□□□□ -0.22
Ccdc40-201ENSMUST00000035935 4930567H17RikQ3V0K5 233 aa13.68□□□□□ -0.22
Ccdc40-201ENSMUST00000035935 Rad21Q61550 635 aaKnown RBP13.67□□□□□ -0.22
Ccdc40-201ENSMUST00000035935 Ofd1Q80Z25 1017 aa13.65□□□□□ -0.22
Ccdc40-201ENSMUST00000035935 Hspa5P20029 655 aaKnown RBP13.64□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Mroh3A0A1D5RM54 893 aa13.64□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Rrp7aQ9D1C9 280 aaKnown RBP13.63□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Iqgap2Q3UQ44 1575 aa13.63□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Grwd1Q810D6 446 aaKnown RBP13.62□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Rpap1Q80TE0 1409 aa13.62□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Dhx57Q6P5D3 1388 aaKnown RBP13.61□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 IqubQ8CDK3 788 aa13.6□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Srpk2O54781 681 aaKnown RBP13.6□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 Pkd2O35245 966 aa13.59□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 1700123L14RikQ3V2K7 440 aa13.59□□□□□ -0.23
Ccdc40-201ENSMUST00000035935 LrpprcQ6PB66 1392 aaKnown RBP13.58□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Gm20521D3Z5F7 333 aa13.56□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Mphosph9A6H5Y1 991 aa13.56□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Map4P27546 1125 aaKnown RBP13.55□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 UacaQ8CGB3 1411 aa13.55□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Ccdc9Q8VC31 543 aaKnown RBP13.54□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Kdm2aP59997 1161 aa13.54□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Top2aQ01320 1528 aaKnown RBP13.53□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Arid4bA2CG63 1314 aaKnown RBP13.52□□□□□ -0.24
Ccdc40-201ENSMUST00000035935 Cabp1Q9JLK7 227 aa13.52□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Plekhh2Q8C115 1491 aa13.5□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 DiexfQ8BTT6 772 aaKnown RBP13.49□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Rundc1Q0VDN7 615 aa13.49□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Shroom4Q1W617 1475 aa13.48□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Mbd3Q9Z2D8 285 aaKnown RBP13.48□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Safb2Q80YR5 991 aaKnown RBP13.47□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Ccnb3Q810T2 1396 aa13.47□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Efcab5A0JP43 1406 aa13.46□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Fhad1A6PWD2 1420 aa13.46□□□□□ -0.25
Ccdc40-201ENSMUST00000035935 Dhx29Q6PGC1 1365 aaKnown RBP13.46□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Cc2d2aQ8CFW7 1633 aa13.46□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Exosc9Q9JHI7 438 aaKnown RBP13.44□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Cux1P53564 1515 aa13.44□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 P3h3Q8CG70 732 aa13.44□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Hsp90aa1P07901 733 aaKnown RBP13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Trak1Q6PD31 939 aa13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 NrkQ9R0G8 1455 aa13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Nup155Q99P88 1391 aaKnown RBP13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Fam71e1A1L3C1 212 aa13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Zfp777B9EKF4 885 aa13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 ArxO35085 564 aa13.43□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 AknaQ80VW7 1404 aa13.42□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Wwc2Q6NXJ0 1187 aa13.42□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Stk24Q99KH8 431 aa13.42□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Polr1aO35134 1717 aaKnown RBP13.42□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Rock2P70336 1388 aa13.42□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Stag3O70576 1240 aa13.41□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Fgd1P52734 960 aa13.41□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Chmp4bQ9D8B3 224 aaKnown RBP13.41□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Ankrd36D3Z4K0 1415 aa13.41□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 Mapk8ip3Q9ESN9 1337 aa13.4□□□□□ -0.26
Ccdc40-201ENSMUST00000035935 CanxP35564 591 aaKnown RBP13.39□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Map3k1P53349 1493 aa13.39□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Tmf1B9EKI3 1091 aa13.39□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Hsp90ab1P11499 724 aaKnown RBP13.39□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Sin3aQ60520 1274 aaKnown RBP13.39□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Exoc6Q8R313 802 aa13.38□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Trim30dE9PWL0 497 aa13.38□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 NudcO35685 332 aaKnown RBP13.37□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Rangap1P46061 589 aaKnown RBP13.37□□□□□ -0.27
Ccdc40-201ENSMUST00000035935 Zscan21Q07231 555 aa13.36□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 37.3 ms