RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 A0A0J9YX75 114 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 SRSF3P84103 164 aaKnown RBP4.67□□□□□ -1.66
SCN1A-217ENST00000637988 DEFB114Q30KQ6 69 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 ZNF581Q9P0T4 197 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 C9orf118A6NHY6 69 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 CFC1BP0CG36 223 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 CFC1P0CG37 223 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 GATA1P15976 413 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-217ENST00000637988 ODF3BA8MYP8 253 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 CXCL1P09341 107 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 PRB2P02812 416 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-217ENST00000637988 COX8AP10176 69 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 SPINK6Q6UWN8 80 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 G3V4G9 280 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 BPY2O14599 106 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 BTCP35070 178 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 HIST3H2BBQ8N257 126 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 CYYR1Q96J86 154 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 CTRLP40313 264 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 C1orf134Q5TEV5 83 aa4.67□□□□□ -1.66
SCN1A-217ENST00000637988 MLST8Q9BVC4 326 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 A0A0B4J2C4 111 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 SYCNQ0VAF6 134 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 CRYGBP07316 175 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 DHRS4-AS1Q9P1J3 65 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 LY6LH3BQJ8 138 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 MIR7-3HGQ8N6C7 128 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 V9GYV3 84 aa4.66□□□□□ -1.66
SCN1A-217ENST00000637988 WI2-2373I1.2A0A1W2PRP0 233 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 PLAC8L1A1L4L8 177 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 HRCT1Q6UXD1 115 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 C3orf22Q8N5N4 141 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 Q6ZVQ6 151 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 RNF185Q96GF1 192 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 IGLC2P0DOY2 106 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 IGLC3P0DOY3 106 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 C10orf25Q5T742 122 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 Q6ZSV7 163 aa4.65□□□□□ -1.66
SCN1A-217ENST00000637988 IGLV9-49A0A0B4J1Y8 123 aa4.65□□□□□ -1.67
SCN1A-217ENST00000637988 RITA1Q96K30 269 aa4.65□□□□□ -1.67
SCN1A-217ENST00000637988 PTPRBP23467 1997 aa4.65□□□□□ -1.67
SCN1A-217ENST00000637988 IGLV4-69A0A075B6H9 119 aa4.65□□□□□ -1.67
SCN1A-217ENST00000637988 Q8N7P7 452 aa4.65□□□□□ -1.67
SCN1A-217ENST00000637988 LINC00482Q8N8I6 264 aa4.65□□□□□ -1.67
SCN1A-217ENST00000637988 FAM229AH3BQW9 127 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 C19orf84I3L1E1 186 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 NDUFA7O95182 113 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 TOMM6Q96B49 74 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 MBD6Q96DN6 1003 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 NDUFS6O75380 124 aaKnown RBP4.64□□□□□ -1.67
SCN1A-217ENST00000637988 NANOS2P60321 138 aaKnown RBP4.64□□□□□ -1.67
SCN1A-217ENST00000637988 C11orf53Q8IXP5 236 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 ATOX1O00244 68 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 LECT2O14960 151 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 FOXI1Q12951 378 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 UBE2V1Q13404 147 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 ETDBQ3ZM63 59 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 MDFICQ9P1T7 246 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 LELP1Q5T871 98 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 PSMG3-AS1Q96PY0 264 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 SPRNQ5BIV9 151 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 WFDC10BQ8IUB3 73 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 CIRBP-AS1Q8TBR5 109 aa4.64□□□□□ -1.67
SCN1A-217ENST00000637988 TEX49A0A1B0GTD5 131 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 BRK1Q8WUW1 75 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 A0A1W2PPM0 123 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 LMO4P61968 165 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 Q6ZTI0 123 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 SVIPQ8NHG7 77 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 TTC28Q96AY4 2481 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 SPANXB1Q9NS25 103 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-217ENST00000637988 TAX1BP3O14907 124 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 DKK2Q9UBU2 259 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 DLEU1O43261 78 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 TRBV6-8A0A0A6YYG3 113 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 UNQ9165/PRO28630Q6UXU0 137 aa4.63□□□□□ -1.67
SCN1A-217ENST00000637988 C19orf71A6NCJ1 209 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 C11orf86A6NJI1 115 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 C12orf74Q32Q52 190 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 MSRB1Q9NZV6 116 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 FSTL3O95633 263 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 TRBV6-4A0A1B0GX49 114 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 DAND5Q8N907 189 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 LINC01006Q8NI28 216 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 ATRAIDQ6UW56 229 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 A0A0J9YXV3 536 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 LIMD2Q9BT23 127 aa4.62□□□□□ -1.67
SCN1A-217ENST00000637988 RPL39P62891 51 aaKnown RBP4.61□□□□□ -1.67
SCN1A-217ENST00000637988 H3BMG7 143 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 REG3GQ6UW15 175 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 J3QL48 77 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 TRAV23DV6A0A075B6W5 121 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 OXLD1Q5BKU9 147 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 IGLV1-47P01700 117 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 IGHV4-30-4P0DP06 118 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 PYY3Q5JQD4 70 aa4.61□□□□□ -1.67
SCN1A-217ENST00000637988 IGKV3D-7A0A0C4DH55 119 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 COX17Q14061 63 aa4.6□□□□□ -1.67
SCN1A-217ENST00000637988 MRPL55Q7Z7F7 128 aaKnown RBP4.6□□□□□ -1.67
SCN1A-217ENST00000637988 K7ERJ3 54 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms