RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 TEN1Q86WV5 123 aa10.95□□□□□ -0.66
CLN3-253ENST00000636977 TMEM141Q96I45 108 aa10.95□□□□□ -0.66
CLN3-253ENST00000636977 KRTAP10-9P60411 292 aa10.94□□□□□ -0.66
CLN3-253ENST00000636977 ANKRD29Q8N6D5 301 aa10.94□□□□□ -0.66
CLN3-253ENST00000636977 ATP6V0E2Q8NHE4 81 aa10.94□□□□□ -0.66
CLN3-253ENST00000636977 RAX2Q96IS3 184 aa10.94□□□□□ -0.66
CLN3-253ENST00000636977 AMELXQ99217 191 aa10.94□□□□□ -0.66
CLN3-253ENST00000636977 NAV2Q8IVL1 2488 aa10.93□□□□□ -0.66
CLN3-253ENST00000636977 RHODO00212 210 aa10.93□□□□□ -0.66
CLN3-253ENST00000636977 UBE2D1P51668 147 aa10.93□□□□□ -0.66
CLN3-253ENST00000636977 DEFB131AP59861 70 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 CEMP1Q6PRD7 247 aaPredicted RBP10.92□□□□□ -0.66
CLN3-253ENST00000636977 USP24Q9UPU5 2620 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 RBMY1BA6NDE4 496 aaKnown RBP10.92□□□□□ -0.66
CLN3-253ENST00000636977 RBMY1EA6NEQ0 496 aaKnown RBP10.92□□□□□ -0.66
CLN3-253ENST00000636977 RBMY1DP0C7P1 496 aaKnown RBP10.92□□□□□ -0.66
CLN3-253ENST00000636977 DSCR9P59020 149 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 HERVK_113P61574 105 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 MRPL23Q16540 153 aaKnown RBP10.92□□□□□ -0.66
CLN3-253ENST00000636977 A8MWV9 139 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 SCGB1C2P0DMR2 95 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 Q6YL49 198 aa10.92□□□□□ -0.66
CLN3-253ENST00000636977 TRPT1Q86TN4 253 aaKnown RBP10.92□□□□□ -0.66
CLN3-253ENST00000636977 RNASE13Q5GAN3 156 aaKnown RBP10.91□□□□□ -0.66
CLN3-253ENST00000636977 SONP18583 2426 aaKnown RBP10.91□□□□□ -0.66
CLN3-253ENST00000636977 A0A0J9YXV3 536 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 TMEM89A2RUT3 159 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 J3QQQ9 107 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 NSUN5P1Q3KNT7 163 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 PAPPA-AS1Q5QFB9 102 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 C20orf203Q8NBC4 194 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 UBE2E2Q96LR5 201 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 CR1P17927 2039 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 EPG5Q9HCE0 2579 aa10.91□□□□□ -0.66
CLN3-253ENST00000636977 IGHV3-30P01768 117 aa10.9□□□□□ -0.66
CLN3-253ENST00000636977 IGHV3-30-5P0DP03 117 aa10.9□□□□□ -0.66
CLN3-253ENST00000636977 CHD6Q8TD26 2715 aa10.9□□□□□ -0.66
CLN3-253ENST00000636977 ELANEP08246 267 aa10.9□□□□□ -0.66
CLN3-253ENST00000636977 IGHV4-31P0DP07 118 aa10.9□□□□□ -0.66
CLN3-253ENST00000636977 Q6ZSN1 163 aa10.9□□□□□ -0.66
CLN3-253ENST00000636977 CFC1BP0CG36 223 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 CFC1P0CG37 223 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 NDUFA11Q86Y39 141 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 FAM104AQ969W3 186 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 NF1P21359 2839 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 NACAE9PAV3 2078 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 IGLV4-3A0A075B6K6 122 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 I3L3M4 83 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 TCL1BO95988 128 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 SLC25A29Q8N8R3 303 aa10.89□□□□□ -0.67
CLN3-253ENST00000636977 TMEM223A0PJW6 202 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 TMEM262E9PQX1 116 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 ZNF22P17026 224 aaPredicted RBP10.88□□□□□ -0.67
CLN3-253ENST00000636977 RHOHQ15669 191 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 TMEM61Q8N0U2 210 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 LOC107984640A0A0U1RRK4 108 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 ADARB2-AS1A8MUL3 147 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 EIF4EBP3O60516 100 aaPredicted RBP10.88□□□□□ -0.67
CLN3-253ENST00000636977 FSHBP01225 129 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 LGALS3P17931 250 aaKnown RBP10.88□□□□□ -0.67
CLN3-253ENST00000636977 WNK1Q9H4A3 2382 aa10.88□□□□□ -0.67
CLN3-253ENST00000636977 J3QLI3 93 aa10.87□□□□□ -0.67
CLN3-253ENST00000636977 BBC3Q96PG8 261 aaPredicted RBP10.87□□□□□ -0.67
CLN3-253ENST00000636977 PRRC2AP48634 2157 aaKnown RBP10.87□□□□□ -0.67
CLN3-253ENST00000636977 AKAP9Q99996 3911 aa10.87□□□□□ -0.67
CLN3-253ENST00000636977 TRGV11A0A075B6L2 103 aa10.87□□□□□ -0.67
CLN3-253ENST00000636977 H3BMM0 161 aa10.87□□□□□ -0.67
CLN3-253ENST00000636977 KHDC1LQ5JSQ8 128 aa10.87□□□□□ -0.67
CLN3-253ENST00000636977 CHCHD5Q9BSY4 110 aa10.87□□□□□ -0.67
CLN3-253ENST00000636977 H7C2G1 150 aa10.86□□□□□ -0.67
CLN3-253ENST00000636977 NIPBLQ6KC79 2804 aaeCLIP10.86□□□□□ -0.67
CLN3-253ENST00000636977 VCX2Q9H322 139 aa10.86□□□□□ -0.67
CLN3-253ENST00000636977 C9JAW5 83 aa10.86□□□□□ -0.67
CLN3-253ENST00000636977 UBR5O95071 2799 aaPredicted RBP10.85□□□□□ -0.67
CLN3-253ENST00000636977 CD28P10747 220 aa10.85□□□□□ -0.67
CLN3-253ENST00000636977 SPXQ9BT56 116 aa10.85□□□□□ -0.67
CLN3-253ENST00000636977 CSDC2Q9Y534 153 aaKnown RBP10.85□□□□□ -0.67
CLN3-253ENST00000636977 NBPF19A0A087WUL8 3843 aa10.85□□□□□ -0.67
CLN3-253ENST00000636977 SETD2Q9BYW2 2564 aaPredicted RBP10.85□□□□□ -0.67
CLN3-253ENST00000636977 UBE2D3P61077 147 aa10.85□□□□□ -0.67
CLN3-253ENST00000636977 UBE2D2P62837 147 aa10.85□□□□□ -0.67
CLN3-253ENST00000636977 C15orf53Q8NAA6 179 aa10.85□□□□□ -0.67
CLN3-253ENST00000636977 TRAV8-3A0A0A6YYJ7 113 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 C10orf126Q8N4M7 172 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 TRAV2A0A0B4J234 112 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 IGHV3-38A0A0C4DH36 116 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 A4D1N5 150 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 A8MZ25 164 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 LEPROTO15243 131 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 RNF152Q8N8N0 203 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 NOTCH3Q9UM47 2321 aa10.84□□□□□ -0.67
CLN3-253ENST00000636977 LINC00694P0DN24 101 aa10.83□□□□□ -0.68
CLN3-253ENST00000636977 NTN5Q8WTR8 489 aaPredicted RBP10.83□□□□□ -0.68
CLN3-253ENST00000636977 APCP25054 2843 aa10.83□□□□□ -0.68
CLN3-253ENST00000636977 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.82□□□□□ -0.68
CLN3-253ENST00000636977 IGKV2-29A2NJV5 120 aaPredicted RBP10.82□□□□□ -0.68
CLN3-253ENST00000636977 SLC25A20O43772 301 aa10.82□□□□□ -0.68
CLN3-253ENST00000636977 MUSTN1Q8IVN3 82 aa10.82□□□□□ -0.68
CLN3-253ENST00000636977 C11orf44Q8N8P7 122 aa10.82□□□□□ -0.68
CLN3-253ENST00000636977 MAP6D1Q9H9H5 199 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms