RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PF4P02776 101 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 RPL35AP18077 110 aaKnown RBP11.33□□□□□ -0.6
CLN3-251ENST00000636853 GCSHP23434 173 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 BEAN1Q3B7T3 259 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 CEND1Q8N111 149 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 SIGMAR1Q99720 223 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 SPXQ9BT56 116 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 C19orf73Q9NVV2 129 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 FN1P02751 2386 aaKnown RBP11.33□□□□□ -0.6
CLN3-251ENST00000636853 TEX48A0A1B0GUV7 120 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 PIK3CD-AS1Q5SR53 167 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 PTH2Q96A98 100 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 NOTCH3Q9UM47 2321 aa11.33□□□□□ -0.6
CLN3-251ENST00000636853 I3L3M4 83 aa11.32□□□□□ -0.6
CLN3-251ENST00000636853 GIG44P09565 113 aaPredicted RBP11.32□□□□□ -0.6
CLN3-251ENST00000636853 CMC4P56277 68 aaPredicted RBP11.32□□□□□ -0.6
CLN3-251ENST00000636853 C2CD3Q4AC94 2353 aa11.32□□□□□ -0.6
CLN3-251ENST00000636853 TRBV25-1A0A075B6N4 114 aa11.32□□□□□ -0.6
CLN3-251ENST00000636853 NSD1Q96L73 2696 aaPredicted RBP11.31□□□□□ -0.6
CLN3-251ENST00000636853 RPL24P83731 157 aaKnown RBP11.31□□□□□ -0.6
CLN3-251ENST00000636853 SPATA25Q9BR10 227 aa11.31□□□□□ -0.6
CLN3-251ENST00000636853 EDA2RQ9HAV5 297 aa11.31□□□□□ -0.6
CLN3-251ENST00000636853 RHOHQ15669 191 aa11.3□□□□□ -0.6
CLN3-251ENST00000636853 SPANXB1Q9NS25 103 aaPredicted RBP11.3□□□□□ -0.6
CLN3-251ENST00000636853 HIVEP1P15822 2718 aa11.3□□□□□ -0.6
CLN3-251ENST00000636853 EMP1P54849 157 aa11.3□□□□□ -0.6
CLN3-251ENST00000636853 LINC00482Q8N8I6 264 aa11.3□□□□□ -0.6
CLN3-251ENST00000636853 TNFRSF18Q9Y5U5 241 aa11.3□□□□□ -0.6
CLN3-251ENST00000636853 LINC01549A6NIU2 74 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 TMEM141Q96I45 108 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 TIMM17AQ99595 171 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 OPRPNQ99935 248 aaPredicted RBP11.29□□□□□ -0.6
CLN3-251ENST00000636853 TRGV1A0A0A0MS02 117 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 IGLL5B9A064 214 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 RS1O15537 224 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 MAPKAPK5-AS1Q8N8E1 139 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 FAM110AQ9BQ89 295 aa11.29□□□□□ -0.6
CLN3-251ENST00000636853 PMVKQ15126 192 aa11.28□□□□□ -0.6
CLN3-251ENST00000636853 C20orf203Q8NBC4 194 aa11.28□□□□□ -0.6
CLN3-251ENST00000636853 IL17DQ8TAD2 202 aa11.28□□□□□ -0.6
CLN3-251ENST00000636853 GAGE12HA6NDE8 117 aa11.28□□□□□ -0.6
CLN3-251ENST00000636853 RHODO00212 210 aa11.28□□□□□ -0.6
CLN3-251ENST00000636853 SPATA3Q8NHX4 192 aa11.28□□□□□ -0.6
CLN3-251ENST00000636853 IGLV4-69A0A075B6H9 119 aa11.27□□□□□ -0.61
CLN3-251ENST00000636853 A0A1B0GWB2 263 aa11.27□□□□□ -0.61
CLN3-251ENST00000636853 TMEM263Q8WUH6 116 aaKnown RBP11.27□□□□□ -0.61
CLN3-251ENST00000636853 A0A1B0GV72 72 aa11.26□□□□□ -0.61
CLN3-251ENST00000636853 IGHV3-53P01767 116 aa11.26□□□□□ -0.61
CLN3-251ENST00000636853 Q6ZTI0 123 aa11.26□□□□□ -0.61
CLN3-251ENST00000636853 NHP2Q9NX24 153 aaKnown RBP11.26□□□□□ -0.61
CLN3-251ENST00000636853 C11orf86A6NJI1 115 aa11.26□□□□□ -0.61
CLN3-251ENST00000636853 ZNF479Q96JC4 524 aa11.26□□□□□ -0.61
CLN3-251ENST00000636853 C12orf74Q32Q52 190 aa11.25□□□□□ -0.61
CLN3-251ENST00000636853 IGHV3-38A0A0C4DH36 116 aa11.25□□□□□ -0.61
CLN3-251ENST00000636853 K7ERJ3 54 aa11.25□□□□□ -0.61
CLN3-251ENST00000636853 CRLF1O75462 422 aa11.25□□□□□ -0.61
CLN3-251ENST00000636853 NOP10Q9NPE3 64 aaKnown RBP11.25□□□□□ -0.61
CLN3-251ENST00000636853 CSNK1G2-AS1Q8NCQ2 148 aa11.24□□□□□ -0.61
CLN3-251ENST00000636853 RRN3P1Q2M238 152 aa11.24□□□□□ -0.61
CLN3-251ENST00000636853 OR11H2Q8NH07 326 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 PRO0461Q9UI25 63 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 WFDC2Q14508 124 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.23□□□□□ -0.61
CLN3-251ENST00000636853 ZNRF2Q8NHG8 242 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 PRADC1Q9BSG0 188 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 C1QTNF4Q9BXJ3 329 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 GTSF1LQ9H1H1 148 aa11.23□□□□□ -0.61
CLN3-251ENST00000636853 IGLV4-3A0A075B6K6 122 aa11.22□□□□□ -0.61
CLN3-251ENST00000636853 TRBV7-3A0A075B6L6 115 aa11.22□□□□□ -0.61
CLN3-251ENST00000636853 PLAC8L1A1L4L8 177 aa11.22□□□□□ -0.61
CLN3-251ENST00000636853 CEMP1Q6PRD7 247 aaPredicted RBP11.22□□□□□ -0.61
CLN3-251ENST00000636853 ATP6V0E2Q8NHE4 81 aa11.22□□□□□ -0.61
CLN3-251ENST00000636853 GAGE13Q4V321 117 aa11.21□□□□□ -0.61
CLN3-251ENST00000636853 DNAJC30Q96LL9 226 aa11.21□□□□□ -0.61
CLN3-251ENST00000636853 VWFP04275 2813 aa11.21□□□□□ -0.61
CLN3-251ENST00000636853 PAPPA-AS1Q5QFB9 102 aa11.21□□□□□ -0.62
CLN3-251ENST00000636853 C16orf74Q96GX8 76 aa11.21□□□□□ -0.62
CLN3-251ENST00000636853 CHCHD7Q9BUK0 85 aa11.21□□□□□ -0.62
CLN3-251ENST00000636853 SMAGPQ0VAQ4 97 aa11.2□□□□□ -0.62
CLN3-251ENST00000636853 DAZ2Q13117 558 aaKnown RBP11.2□□□□□ -0.62
CLN3-251ENST00000636853 TMEM170BQ5T4T1 132 aa11.2□□□□□ -0.62
CLN3-251ENST00000636853 MYMXA0A1B0GTQ4 84 aa11.2□□□□□ -0.62
CLN3-251ENST00000636853 VCX2Q9H322 139 aa11.2□□□□□ -0.62
CLN3-251ENST00000636853 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.19□□□□□ -0.62
CLN3-251ENST00000636853 TRAV4A0A0B4J268 109 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 IGKV2-29A2NJV5 120 aaPredicted RBP11.19□□□□□ -0.62
CLN3-251ENST00000636853 GAGE7O76087 117 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 GAGE12FP0CL80 117 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 GAGE12GP0CL81 117 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 GAGE12IP0CL82 117 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 FAM104AQ969W3 186 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 TENM1Q9UKZ4 2725 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 RNASE13Q5GAN3 156 aaKnown RBP11.19□□□□□ -0.62
CLN3-251ENST00000636853 HIST1H4GQ99525 98 aa11.19□□□□□ -0.62
CLN3-251ENST00000636853 H3BMG7 143 aa11.18□□□□□ -0.62
CLN3-251ENST00000636853 PYGO1Q9Y3Y4 419 aa11.18□□□□□ -0.62
CLN3-251ENST00000636853 ETDBQ3ZM63 59 aa11.18□□□□□ -0.62
CLN3-251ENST00000636853 C9orf66Q5T8R8 295 aa11.18□□□□□ -0.62
CLN3-251ENST00000636853 MTURNQ8N3F0 131 aa11.18□□□□□ -0.62
CLN3-251ENST00000636853 TRGV2A0A075B6R0 118 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms