RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 CLLU1Q5K131 121 aa9.37□□□□□ -0.91
PNKP-223ENST00000629179 FRZBQ92765 325 aa9.37□□□□□ -0.91
PNKP-223ENST00000629179 TMEM243Q9BU79 118 aa9.37□□□□□ -0.91
PNKP-223ENST00000629179 SMDT1Q9H4I9 107 aa9.37□□□□□ -0.91
PNKP-223ENST00000629179 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.36□□□□□ -0.91
PNKP-223ENST00000629179 LINC00862A6NCI5 91 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 XGP55808 180 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 COTL1Q14019 142 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 CLPSL2Q6UWE3 100 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 SLC7A5P1Q8MH63 180 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 LINC00269Q8N2A0 174 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 NUP35Q8NFH5 326 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 C1orf43Q9BWL3 253 aa9.36□□□□□ -0.91
PNKP-223ENST00000629179 GAS8-AS1O95177 125 aa9.35□□□□□ -0.91
PNKP-223ENST00000629179 APOBP04114 4563 aaKnown RBP9.35□□□□□ -0.91
PNKP-223ENST00000629179 AMTP48728 403 aa9.35□□□□□ -0.91
PNKP-223ENST00000629179 Q8N1X5 172 aa9.35□□□□□ -0.91
PNKP-223ENST00000629179 TMEM191AQ9H0A3 160 aa9.35□□□□□ -0.91
PNKP-223ENST00000629179 IGLV4-60A0A075B6I1 120 aa9.34□□□□□ -0.91
PNKP-223ENST00000629179 MIAQ16674 131 aa9.34□□□□□ -0.91
PNKP-223ENST00000629179 C20orf203Q8NBC4 194 aa9.34□□□□□ -0.91
PNKP-223ENST00000629179 RNF185Q96GF1 192 aa9.34□□□□□ -0.91
PNKP-223ENST00000629179 PRR34Q9NV39 138 aa9.34□□□□□ -0.91
PNKP-223ENST00000629179 A0A1B0GUV1 79 aa9.33□□□□□ -0.92
PNKP-223ENST00000629179 SDHAF1A6NFY7 115 aa9.33□□□□□ -0.92
PNKP-223ENST00000629179 UBE2L6O14933 153 aa9.33□□□□□ -0.92
PNKP-223ENST00000629179 RAB4AP20338 218 aa9.33□□□□□ -0.92
PNKP-223ENST00000629179 RIGQ13278 110 aa9.33□□□□□ -0.92
PNKP-223ENST00000629179 NAT8BQ9UHF3 227 aa9.33□□□□□ -0.92
PNKP-223ENST00000629179 HLA-DQA1P01909 254 aa9.32□□□□□ -0.92
PNKP-223ENST00000629179 HAMPP81172 84 aa9.32□□□□□ -0.92
PNKP-223ENST00000629179 REG3AQ06141 175 aa9.32□□□□□ -0.92
PNKP-223ENST00000629179 AMN1Q8IY45 258 aa9.32□□□□□ -0.92
PNKP-223ENST00000629179 TRBV6-5A0A0K0K1A5 114 aa9.31□□□□□ -0.92
PNKP-223ENST00000629179 SMIM27A0A1W2PRY6 76 aa9.31□□□□□ -0.92
PNKP-223ENST00000629179 PMCHP20382 165 aa9.31□□□□□ -0.92
PNKP-223ENST00000629179 RPS10P46783 165 aaKnown RBP9.31□□□□□ -0.92
PNKP-223ENST00000629179 LINC01620Q4KN68 170 aa9.31□□□□□ -0.92
PNKP-223ENST00000629179 KRTAP26-1Q6PEX3 210 aa9.31□□□□□ -0.92
PNKP-223ENST00000629179 FAM30AQ9NZY2 134 aa9.31□□□□□ -0.92
PNKP-223ENST00000629179 IGLV10-54A0A075B6I4 117 aa9.3□□□□□ -0.92
PNKP-223ENST00000629179 SMKR1H3BMG3 65 aa9.3□□□□□ -0.92
PNKP-223ENST00000629179 NCR2O95944 276 aa9.3□□□□□ -0.92
PNKP-223ENST00000629179 MRAP2Q96G30 205 aa9.3□□□□□ -0.92
PNKP-223ENST00000629179 TMEM70Q9BUB7 260 aa9.3□□□□□ -0.92
PNKP-223ENST00000629179 ST20Q9HBF5 79 aa9.3□□□□□ -0.92
PNKP-223ENST00000629179 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.29□□□□□ -0.92
PNKP-223ENST00000629179 IGKV2-29A2NJV5 120 aaPredicted RBP9.29□□□□□ -0.92
PNKP-223ENST00000629179 USP17L23D6RBM5 183 aa9.29□□□□□ -0.92
PNKP-223ENST00000629179 I3L3M4 83 aa9.29□□□□□ -0.92
PNKP-223ENST00000629179 APCSP02743 223 aa9.29□□□□□ -0.92
PNKP-223ENST00000629179 SMR3BP02814 79 aaPredicted RBP9.28□□□□□ -0.92
PNKP-223ENST00000629179 CAMPP49913 170 aa9.28□□□□□ -0.92
PNKP-223ENST00000629179 POLR2KP53803 58 aaKnown RBP9.28□□□□□ -0.92
PNKP-223ENST00000629179 C14orf177Q52M58 125 aa9.28□□□□□ -0.92
PNKP-223ENST00000629179 AMMECR1LQ6DCA0 310 aa9.28□□□□□ -0.92
PNKP-223ENST00000629179 PCLOQ9Y6V0 5065 aa9.27□□□□□ -0.92
PNKP-223ENST00000629179 TRAV8-4A0A0B4J246 113 aa9.27□□□□□ -0.93
PNKP-223ENST00000629179 TSHBP01222 138 aa9.27□□□□□ -0.93
PNKP-223ENST00000629179 FAM104BQ5XKR9 115 aa9.27□□□□□ -0.93
PNKP-223ENST00000629179 RNASEKQ6P5S7 137 aaKnown RBP9.27□□□□□ -0.93
PNKP-223ENST00000629179 TMEM242Q9NWH2 141 aa9.27□□□□□ -0.93
PNKP-223ENST00000629179 IGKV3OR2-268A0A0C4DH90 116 aa9.26□□□□□ -0.93
PNKP-223ENST00000629179 EPM2AB3EWF7 344 aa9.26□□□□□ -0.93
PNKP-223ENST00000629179 H7C423 109 aa9.26□□□□□ -0.93
PNKP-223ENST00000629179 PRSS1P07477 247 aa9.26□□□□□ -0.93
PNKP-223ENST00000629179 FGF6P10767 208 aa9.26□□□□□ -0.93
PNKP-223ENST00000629179 MRPL51Q4U2R6 128 aaKnown RBP9.26□□□□□ -0.93
PNKP-223ENST00000629179 MRPL54Q6P161 138 aaKnown RBP9.26□□□□□ -0.93
PNKP-223ENST00000629179 NRACQ8N912 160 aa9.26□□□□□ -0.93
PNKP-223ENST00000629179 TRBV27A0A0K0K1C4 114 aa9.25□□□□□ -0.93
PNKP-223ENST00000629179 A0A1B0GW15 77 aa9.25□□□□□ -0.93
PNKP-223ENST00000629179 ESDP10768 282 aa9.25□□□□□ -0.93
PNKP-223ENST00000629179 COMMD7Q86VX2 200 aa9.25□□□□□ -0.93
PNKP-223ENST00000629179 Q6ZSA8 131 aa9.24□□□□□ -0.93
PNKP-223ENST00000629179 ABCA13Q86UQ4 5058 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 A0A1B0GXF2 115 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 VCYO14598 125 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 PPP1R2P9O14990 202 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 PPP1R17O96001 155 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 SUMO2P61956 95 aaKnown RBP9.23□□□□□ -0.93
PNKP-223ENST00000629179 HBBP68871 147 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 Q5VSD8 79 aa9.23□□□□□ -0.93
PNKP-223ENST00000629179 GAGE12HA6NDE8 117 aa9.22□□□□□ -0.93
PNKP-223ENST00000629179 S100A8P05109 93 aa9.22□□□□□ -0.93
PNKP-223ENST00000629179 CKS2P33552 79 aa9.22□□□□□ -0.93
PNKP-223ENST00000629179 UQCC3Q6UW78 93 aa9.22□□□□□ -0.93
PNKP-223ENST00000629179 ZNF25P17030 456 aaPredicted RBP9.21□□□□□ -0.94
PNKP-223ENST00000629179 FCER1GP30273 86 aa9.21□□□□□ -0.94
PNKP-223ENST00000629179 PNRC1Q12796 327 aaPredicted RBP9.21□□□□□ -0.94
PNKP-223ENST00000629179 CHCHD10Q8WYQ3 142 aaPredicted RBP9.21□□□□□ -0.94
PNKP-223ENST00000629179 TMEM101Q96IK0 257 aa9.21□□□□□ -0.94
PNKP-223ENST00000629179 BTF3L4Q96K17 158 aa9.21□□□□□ -0.94
PNKP-223ENST00000629179 FLG2Q5D862 2391 aaPredicted RBP9.21□□□□□ -0.94
PNKP-223ENST00000629179 hDV102S1A0JD36 115 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 C7orf77A4D0Y5 90 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 D6R8Y8 96 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 F8W036 122 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 MT-ND4LP03901 98 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 DGAT2L7PQ6IED9 249 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms