RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 DEFB104AQ8WTQ1 72 aa13.66□□□□□ -0.22
PTCD3-220ENST00000627371 TMEM243Q9BU79 118 aa13.66□□□□□ -0.22
PTCD3-220ENST00000627371 RPS10P5Q9NQ39 176 aa13.66□□□□□ -0.22
PTCD3-220ENST00000627371 S100PP25815 95 aa13.65□□□□□ -0.22
PTCD3-220ENST00000627371 AMTP48728 403 aa13.65□□□□□ -0.22
PTCD3-220ENST00000627371 POLR2KP53803 58 aaKnown RBP13.65□□□□□ -0.22
PTCD3-220ENST00000627371 SVBPQ8N300 66 aa13.65□□□□□ -0.22
PTCD3-220ENST00000627371 PKD1P98161 4303 aa13.65□□□□□ -0.22
PTCD3-220ENST00000627371 TRBV27A0A0K0K1C4 114 aa13.64□□□□□ -0.23
PTCD3-220ENST00000627371 D6R8Y8 96 aa13.64□□□□□ -0.23
PTCD3-220ENST00000627371 PMCHP20382 165 aa13.64□□□□□ -0.23
PTCD3-220ENST00000627371 SUMO2P61956 95 aaKnown RBP13.64□□□□□ -0.23
PTCD3-220ENST00000627371 TNP2Q05952 138 aa13.64□□□□□ -0.23
PTCD3-220ENST00000627371 GAGE6Q13070 117 aa13.64□□□□□ -0.23
PTCD3-220ENST00000627371 ELOBQ15370 118 aa13.64□□□□□ -0.23
PTCD3-220ENST00000627371 TRBV24-1A0A075B6N3 115 aa13.63□□□□□ -0.23
PTCD3-220ENST00000627371 SNAPINO95295 136 aa13.63□□□□□ -0.23
PTCD3-220ENST00000627371 PPBPP02775 128 aa13.63□□□□□ -0.23
PTCD3-220ENST00000627371 ATRAIDQ6UW56 229 aa13.63□□□□□ -0.23
PTCD3-220ENST00000627371 Q9HAA7 133 aa13.63□□□□□ -0.23
PTCD3-220ENST00000627371 KLK12Q9UKR0 248 aa13.63□□□□□ -0.23
PTCD3-220ENST00000627371 A0A1B0GVY2 172 aa13.62□□□□□ -0.23
PTCD3-220ENST00000627371 APCSP02743 223 aa13.62□□□□□ -0.23
PTCD3-220ENST00000627371 C20orf78Q9BR46 151 aa13.62□□□□□ -0.23
PTCD3-220ENST00000627371 DNAH11Q96DT5 4516 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 TRAV8-3A0A0A6YYJ7 113 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 UBE2L6O14933 153 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 TNFRSF6BO95407 300 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 TSHBP01222 138 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 RBX1P62877 108 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 ORMDL3Q8N138 153 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 Q8N976 141 aa13.61□□□□□ -0.23
PTCD3-220ENST00000627371 VCYO14598 125 aa13.6□□□□□ -0.23
PTCD3-220ENST00000627371 PHOX2AO14813 284 aa13.6□□□□□ -0.23
PTCD3-220ENST00000627371 TMEM136Q6ZRR5 245 aa13.6□□□□□ -0.23
PTCD3-220ENST00000627371 SLC7A5P1Q8MH63 180 aa13.6□□□□□ -0.23
PTCD3-220ENST00000627371 NPYP01303 97 aa13.59□□□□□ -0.23
PTCD3-220ENST00000627371 ANGP03950 147 aaKnown RBP13.59□□□□□ -0.23
PTCD3-220ENST00000627371 RPL32P62910 135 aaKnown RBP13.59□□□□□ -0.23
PTCD3-220ENST00000627371 UBE2WQ96B02 151 aa13.59□□□□□ -0.23
PTCD3-220ENST00000627371 PKHD1P08F94 4074 aa13.59□□□□□ -0.23
PTCD3-220ENST00000627371 A0A1B0GUV1 79 aa13.58□□□□□ -0.24
PTCD3-220ENST00000627371 H7C423 109 aa13.58□□□□□ -0.24
PTCD3-220ENST00000627371 PRELID3AQ96N28 172 aa13.58□□□□□ -0.24
PTCD3-220ENST00000627371 ESDP10768 282 aa13.57□□□□□ -0.24
PTCD3-220ENST00000627371 Q0VG73 95 aa13.57□□□□□ -0.24
PTCD3-220ENST00000627371 KIR2DL4Q99706 377 aa13.57□□□□□ -0.24
PTCD3-220ENST00000627371 LAMTOR2Q9Y2Q5 125 aa13.57□□□□□ -0.24
PTCD3-220ENST00000627371 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.56□□□□□ -0.24
PTCD3-220ENST00000627371 IGKV2-29A2NJV5 120 aaPredicted RBP13.56□□□□□ -0.24
PTCD3-220ENST00000627371 CRPP02741 224 aa13.56□□□□□ -0.24
PTCD3-220ENST00000627371 C20orf203Q8NBC4 194 aa13.56□□□□□ -0.24
PTCD3-220ENST00000627371 SMIM2Q9BVW6 85 aa13.56□□□□□ -0.24
PTCD3-220ENST00000627371 TM2D2Q9BX73 214 aa13.56□□□□□ -0.24
PTCD3-220ENST00000627371 PSCAO43653 123 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 HLA-DQA1P01909 254 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 FCER1GP30273 86 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 COX19Q49B96 90 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 ENHOQ6UWT2 76 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 RMI2Q96E14 147 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 GNB1LQ9BYB4 327 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 PRR34Q9NV39 138 aa13.55□□□□□ -0.24
PTCD3-220ENST00000627371 IGLV4-60A0A075B6I1 120 aa13.54□□□□□ -0.24
PTCD3-220ENST00000627371 LINC00269Q8N2A0 174 aa13.54□□□□□ -0.24
PTCD3-220ENST00000627371 TCAPO15273 167 aa13.53□□□□□ -0.24
PTCD3-220ENST00000627371 AMMECR1LQ6DCA0 310 aa13.53□□□□□ -0.24
PTCD3-220ENST00000627371 COX11Q9Y6N1 276 aa13.53□□□□□ -0.24
PTCD3-220ENST00000627371 IGKV2D-24A0A075B6R9 120 aa13.52□□□□□ -0.25
PTCD3-220ENST00000627371 A0A087WTM6 91 aa13.52□□□□□ -0.25
PTCD3-220ENST00000627371 PRSS47A8MTI9 375 aa13.52□□□□□ -0.25
PTCD3-220ENST00000627371 FGF6P10767 208 aa13.52□□□□□ -0.25
PTCD3-220ENST00000627371 ZNF25P17030 456 aaPredicted RBP13.52□□□□□ -0.25
PTCD3-220ENST00000627371 MIAQ16674 131 aa13.52□□□□□ -0.25
PTCD3-220ENST00000627371 BIRC6Q9NR09 4857 aa13.52□□□□□ -0.25
PTCD3-220ENST00000627371 REG3AQ06141 175 aa13.51□□□□□ -0.25
PTCD3-220ENST00000627371 RNASEKQ6P5S7 137 aaKnown RBP13.51□□□□□ -0.25
PTCD3-220ENST00000627371 CLPSL2Q6UWE3 100 aa13.51□□□□□ -0.25
PTCD3-220ENST00000627371 MAP1LC3AQ9H492 121 aa13.51□□□□□ -0.25
PTCD3-220ENST00000627371 DYNC1H1Q14204 4646 aaKnown RBP13.51□□□□□ -0.25
PTCD3-220ENST00000627371 TGIF2-C20orf24A0A0A6YYL0 155 aa13.5□□□□□ -0.25
PTCD3-220ENST00000627371 MT-ND6P03923 174 aa13.5□□□□□ -0.25
PTCD3-220ENST00000627371 C1orf43Q9BWL3 253 aa13.5□□□□□ -0.25
PTCD3-220ENST00000627371 LRCOL1A6NCL2 159 aa13.49□□□□□ -0.25
PTCD3-220ENST00000627371 EREGO14944 169 aa13.49□□□□□ -0.25
PTCD3-220ENST00000627371 KIAA1644Q3SXP7 199 aa13.49□□□□□ -0.25
PTCD3-220ENST00000627371 MRPL52Q86TS9 123 aaKnown RBP13.49□□□□□ -0.25
PTCD3-220ENST00000627371 DNAH5Q8TE73 4624 aa13.48□□□□□ -0.25
PTCD3-220ENST00000627371 TMEM101Q96IK0 257 aa13.48□□□□□ -0.25
PTCD3-220ENST00000627371 LOC389332A0A1B0GUA5 103 aa13.47□□□□□ -0.25
PTCD3-220ENST00000627371 SPATA12Q7Z6I5 190 aa13.47□□□□□ -0.25
PTCD3-220ENST00000627371 MAPKAPK5-AS1Q8N8E1 139 aa13.47□□□□□ -0.25
PTCD3-220ENST00000627371 TMEM18Q96B42 140 aa13.47□□□□□ -0.25
PTCD3-220ENST00000627371 MRPL18Q9H0U6 180 aaKnown RBP13.47□□□□□ -0.25
PTCD3-220ENST00000627371 SMAGPQ0VAQ4 97 aa13.46□□□□□ -0.25
PTCD3-220ENST00000627371 Q8N8P6 123 aa13.46□□□□□ -0.25
PTCD3-220ENST00000627371 OR5A1Q8NGJ0 315 aa13.46□□□□□ -0.25
PTCD3-220ENST00000627371 YPEL4Q96NS1 127 aa13.46□□□□□ -0.25
PTCD3-220ENST00000627371 TRAV8-4A0A0B4J246 113 aa13.45□□□□□ -0.26
PTCD3-220ENST00000627371 RAB5AP20339 215 aa13.45□□□□□ -0.26
PTCD3-220ENST00000627371 KRTAP10-2P60368 255 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms