RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TMEM191AQ9H0A3 160 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 A0A087WWL8 130 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 SCO1O75880 301 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 IGHV3-30P01768 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 IGHV3-33P01772 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 IGHV3-30-3P0DP02 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 IGHV3-30-5P0DP03 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 FAM74A4Q5TZK3 123 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 S100A8P05109 93 aa12.61□□□□□ -0.39
CDX1-202ENST00000616154 TGIF2-C20orf24A0A0A6YYL0 155 aa12.6□□□□□ -0.39
CDX1-202ENST00000616154 SSTP61278 116 aa12.6□□□□□ -0.39
CDX1-202ENST00000616154 DPH3P1Q9H4G8 78 aa12.6□□□□□ -0.39
CDX1-202ENST00000616154 RAB4BP61018 213 aa12.59□□□□□ -0.39
CDX1-202ENST00000616154 TM2D2Q9BX73 214 aa12.59□□□□□ -0.39
CDX1-202ENST00000616154 COLCA2A8K830 154 aa12.58□□□□□ -0.4
CDX1-202ENST00000616154 CAMPP49913 170 aa12.58□□□□□ -0.4
CDX1-202ENST00000616154 COX19Q49B96 90 aa12.58□□□□□ -0.4
CDX1-202ENST00000616154 TMEM136Q6ZRR5 245 aa12.58□□□□□ -0.4
CDX1-202ENST00000616154 UBE2D3P61077 147 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 UBE2D2P62837 147 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 FAM104BQ5XKR9 115 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 SMIM15Q7Z3B0 74 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 RNF185Q96GF1 192 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 GNB1LQ9BYB4 327 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 FAM30AQ9NZY2 134 aa12.57□□□□□ -0.4
CDX1-202ENST00000616154 TRBV7-3A0A075B6L6 115 aa12.56□□□□□ -0.4
CDX1-202ENST00000616154 RPL36AP83881 106 aaKnown RBP12.56□□□□□ -0.4
CDX1-202ENST00000616154 RPL36ALQ969Q0 106 aaKnown RBP12.56□□□□□ -0.4
CDX1-202ENST00000616154 SMIM17P0DL12 118 aa12.55□□□□□ -0.4
CDX1-202ENST00000616154 RAB4AP20338 218 aa12.55□□□□□ -0.4
CDX1-202ENST00000616154 WFDC2Q14508 124 aa12.55□□□□□ -0.4
CDX1-202ENST00000616154 Q8N3U1 123 aa12.55□□□□□ -0.4
CDX1-202ENST00000616154 TRAV8-3A0A0A6YYJ7 113 aa12.54□□□□□ -0.4
CDX1-202ENST00000616154 HLA-DQA1P01909 254 aa12.54□□□□□ -0.4
CDX1-202ENST00000616154 MT-ND6P03923 174 aa12.54□□□□□ -0.4
CDX1-202ENST00000616154 AMN1Q8IY45 258 aa12.54□□□□□ -0.4
CDX1-202ENST00000616154 CHCHD7Q9BUK0 85 aa12.54□□□□□ -0.4
CDX1-202ENST00000616154 Q6ZSA8 131 aa12.53□□□□□ -0.4
CDX1-202ENST00000616154 NIT1Q86X76 327 aa12.53□□□□□ -0.4
CDX1-202ENST00000616154 NEXN-AS1Q8NBZ9 246 aa12.53□□□□□ -0.4
CDX1-202ENST00000616154 ZNF56Q15929 161 aa12.52□□□□□ -0.41
CDX1-202ENST00000616154 M0QY20 66 aa12.51□□□□□ -0.41
CDX1-202ENST00000616154 MRPL51Q4U2R6 128 aaKnown RBP12.51□□□□□ -0.41
CDX1-202ENST00000616154 SUMO4Q6EEV6 95 aa12.51□□□□□ -0.41
CDX1-202ENST00000616154 DAZ4Q86SG3 579 aaKnown RBP12.51□□□□□ -0.41
CDX1-202ENST00000616154 MRAP2Q96G30 205 aa12.51□□□□□ -0.41
CDX1-202ENST00000616154 DAZ3Q9NR90 486 aaKnown RBP12.51□□□□□ -0.41
CDX1-202ENST00000616154 RAB5AP20339 215 aa12.5□□□□□ -0.41
CDX1-202ENST00000616154 TRBV6-8A0A0A6YYG3 113 aa12.49□□□□□ -0.41
CDX1-202ENST00000616154 LECT2O14960 151 aa12.49□□□□□ -0.41
CDX1-202ENST00000616154 MGPP08493 103 aa12.49□□□□□ -0.41
CDX1-202ENST00000616154 COX11Q9Y6N1 276 aa12.49□□□□□ -0.41
CDX1-202ENST00000616154 F5H697 171 aa12.48□□□□□ -0.41
CDX1-202ENST00000616154 PPBPP02775 128 aa12.48□□□□□ -0.41
CDX1-202ENST00000616154 PLA2G1BP04054 148 aaKnown RBP12.48□□□□□ -0.41
CDX1-202ENST00000616154 TRAV26-2A0A0B4J265 109 aa12.47□□□□□ -0.41
CDX1-202ENST00000616154 H7C1H1 209 aa12.47□□□□□ -0.41
CDX1-202ENST00000616154 PHOX2AO14813 284 aa12.47□□□□□ -0.41
CDX1-202ENST00000616154 APCSP02743 223 aa12.47□□□□□ -0.41
CDX1-202ENST00000616154 MRPL18Q9H0U6 180 aaKnown RBP12.47□□□□□ -0.41
CDX1-202ENST00000616154 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.46□□□□□ -0.41
CDX1-202ENST00000616154 J3QL48 77 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 GAS8-AS1O95177 125 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 TMEM97Q5BJF2 176 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 LINC00528Q8N1L1 170 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 NRACQ8N912 160 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 BAALCQ8WXS3 180 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 RMI2Q96E14 147 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 TRAPPC1Q9Y5R8 145 aa12.46□□□□□ -0.41
CDX1-202ENST00000616154 TRBV6-5A0A0K0K1A5 114 aa12.45□□□□□ -0.42
CDX1-202ENST00000616154 DNAJC30Q96LL9 226 aa12.45□□□□□ -0.42
CDX1-202ENST00000616154 NIT2Q9NQR4 276 aa12.45□□□□□ -0.42
CDX1-202ENST00000616154 D6R8Y8 96 aa12.44□□□□□ -0.42
CDX1-202ENST00000616154 CKS2P33552 79 aa12.44□□□□□ -0.42
CDX1-202ENST00000616154 RPS10P46783 165 aaKnown RBP12.44□□□□□ -0.42
CDX1-202ENST00000616154 ORMDL3Q8N138 153 aa12.44□□□□□ -0.42
CDX1-202ENST00000616154 LAMTOR2Q9Y2Q5 125 aa12.44□□□□□ -0.42
CDX1-202ENST00000616154 A0A087WX48 190 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 SMKR1H3BMG3 65 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 NCR2O95944 276 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 PPP1R17O96001 155 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 PKIAP61925 76 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 FABP9Q0Z7S8 132 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 NTM-AS1Q6ZSK4 140 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 Q8N976 141 aa12.43□□□□□ -0.42
CDX1-202ENST00000616154 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.43□□□□□ -0.42
CDX1-202ENST00000616154 PRSS47A8MTI9 375 aa12.42□□□□□ -0.42
CDX1-202ENST00000616154 KIAA1644Q3SXP7 199 aa12.42□□□□□ -0.42
CDX1-202ENST00000616154 RPL39LQ96EH5 51 aaKnown RBP12.42□□□□□ -0.42
CDX1-202ENST00000616154 ALKBH7Q9BT30 221 aaPredicted RBP12.42□□□□□ -0.42
CDX1-202ENST00000616154 KLK12Q9UKR0 248 aa12.42□□□□□ -0.42
CDX1-202ENST00000616154 IGKV2D-24A0A075B6R9 120 aa12.41□□□□□ -0.42
CDX1-202ENST00000616154 KRTAP29-1A8MX34 341 aaPredicted RBP12.41□□□□□ -0.42
CDX1-202ENST00000616154 NPYP01303 97 aa12.41□□□□□ -0.42
CDX1-202ENST00000616154 TRGC2P03986 189 aa12.41□□□□□ -0.42
CDX1-202ENST00000616154 RPL32P62910 135 aaKnown RBP12.41□□□□□ -0.42
CDX1-202ENST00000616154 LINC01620Q4KN68 170 aa12.41□□□□□ -0.42
CDX1-202ENST00000616154 SCXQ7RTU7 201 aa12.41□□□□□ -0.42
CDX1-202ENST00000616154 PRELID3AQ96N28 172 aa12.41□□□□□ -0.42
CDX1-202ENST00000616154 TNFRSF6BO95407 300 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms