RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 LINC00482Q8N8I6 264 aa7.62□□□□□ -1.19
VPS39-214ENST00000614932 FLNCQ14315 2725 aa7.62□□□□□ -1.19
VPS39-214ENST00000614932 IGHV3OR16-10A0A075B7F0 116 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 FAM223BA6NKX1 122 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 TEX22C9J3V5 150 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 CELSR2Q9HCU4 2923 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 ACACBO00763 2458 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 IGHV3OR16-8A0A075B7F1 116 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 IGKV3D-7A0A0C4DH55 119 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 KNCNA6PVL3 124 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 SPANXN1Q5VSR9 72 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 FAM19A1Q7Z5A9 133 aa7.61□□□□□ -1.19
VPS39-214ENST00000614932 IGHV4-4A0A075B6R2 117 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 A0A087WVE0 104 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 IGHV3-35A0A0C4DH35 117 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 A0A0J9YXY3 114 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 C11orf71Q6IPW1 123 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 VMO1Q7Z5L0 202 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 IGIPA6NJ69 53 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 Q6ZSV7 163 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 TMEM141Q96I45 108 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 DPM3Q9P2X0 92 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 IGKV3D-20A0A0C4DH25 116 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 IGHG2P01859 326 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 ZNF876PQ49A33 203 aa7.6□□□□□ -1.19
VPS39-214ENST00000614932 IGKV1-17P01599 117 aa7.59□□□□□ -1.19
VPS39-214ENST00000614932 MRPS36P82909 103 aaKnown RBP7.59□□□□□ -1.19
VPS39-214ENST00000614932 RNF182Q8N6D2 247 aa7.59□□□□□ -1.19
VPS39-214ENST00000614932 NACAE9PAV3 2078 aa7.59□□□□□ -1.19
VPS39-214ENST00000614932 TRAV12-3A0A0B4J271 114 aa7.59□□□□□ -1.19
VPS39-214ENST00000614932 IGHV7-4-1A0A0J9YVY3 117 aa7.59□□□□□ -1.19
VPS39-214ENST00000614932 RPL39LQ96EH5 51 aaKnown RBP7.59□□□□□ -1.19
VPS39-214ENST00000614932 CACNA1AO00555 2505 aa7.59□□□□□ -1.19
VPS39-214ENST00000614932 CENPEQ02224 2701 aa7.59□□□□□ -1.2
VPS39-214ENST00000614932 BAALC-AS2P0C853 105 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 TMEM61Q8N0U2 210 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 LY6G5BQ8NDX9 201 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 LITAFQ99732 161 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 BPESC1Q9GZL8 116 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 RBMY1BA6NDE4 496 aaKnown RBP7.58□□□□□ -1.2
VPS39-214ENST00000614932 RBMY1EA6NEQ0 496 aaKnown RBP7.58□□□□□ -1.2
VPS39-214ENST00000614932 RNF223E7ERA6 249 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 RBMY1DP0C7P1 496 aaKnown RBP7.58□□□□□ -1.2
VPS39-214ENST00000614932 RBMY1A1P0DJD3 496 aaKnown RBP7.58□□□□□ -1.2
VPS39-214ENST00000614932 RBMY1CP0DJD4 496 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 NDPQ00604 133 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 CIRBPQ14011 172 aaKnown RBP7.58□□□□□ -1.2
VPS39-214ENST00000614932 RBMY1FQ15415 496 aaKnown RBP7.58□□□□□ -1.2
VPS39-214ENST00000614932 IGSF10Q6WRI0 2623 aa7.58□□□□□ -1.2
VPS39-214ENST00000614932 M0R1W7 72 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 XCL1P47992 114 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 C20orf197Q8N268 126 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 ITLN2Q8WWU7 325 aaPredicted RBP7.57□□□□□ -1.2
VPS39-214ENST00000614932 COPS9Q8WXC6 57 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 TIMM17AQ99595 171 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 XCL2Q9UBD3 114 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 PRRC2AP48634 2157 aaKnown RBP7.57□□□□□ -1.2
VPS39-214ENST00000614932 FAM222AQ5U5X8 452 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 C11orf21Q9P2W6 132 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 MYO18BQ8IUG5 2567 aa7.57□□□□□ -1.2
VPS39-214ENST00000614932 IGHV3-64A0A075B6Q5 118 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 I3L2K1 104 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 M0R381 172 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 COX7A2LO14548 114 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 GHRHP01286 108 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 PMAIP1Q13794 54 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 UBE2D4Q9Y2X8 147 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 USP9XQ93008 2570 aaPredicted RBP7.56□□□□□ -1.2
VPS39-214ENST00000614932 POLQO75417 2590 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 MIAQ16674 131 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 APRG1Q8IVJ8 170 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 RETNQ9HD89 108 aa7.56□□□□□ -1.2
VPS39-214ENST00000614932 H7BZZ5 65 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 K7EIM0 57 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 PPP1R17O96001 155 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 DNAL4O96015 105 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 FANCD2OSQ96PS1 177 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 C22orf24Q9Y442 160 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 ADAMTSL4-AS1Q5T5F5 129 aa7.55□□□□□ -1.2
VPS39-214ENST00000614932 RPL39P62891 51 aaKnown RBP7.54□□□□□ -1.2
VPS39-214ENST00000614932 ECSCRQ19T08 205 aa7.54□□□□□ -1.2
VPS39-214ENST00000614932 FAM208BQ5VWN6 2430 aa7.54□□□□□ -1.2
VPS39-214ENST00000614932 ODF3BA8MYP8 253 aa7.54□□□□□ -1.2
VPS39-214ENST00000614932 BEAN1Q3B7T3 259 aa7.54□□□□□ -1.2
VPS39-214ENST00000614932 IGFL4Q6B9Z1 124 aa7.54□□□□□ -1.2
VPS39-214ENST00000614932 LYPD5Q6UWN5 251 aa7.54□□□□□ -1.2
VPS39-214ENST00000614932 PRB1P04280 392 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 BRD3OSQ6XYD6 125 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 LINC00474Q9P2X8 69 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 IGHV3OR16-13A0A075B7E8 117 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 IGHV3-74A0A0B4J1X5 117 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 SAA4P35542 130 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 VSIG2Q96IQ7 327 aa7.53□□□□□ -1.2
VPS39-214ENST00000614932 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS39-214ENST00000614932 ADARB2-AS1A8MUL3 147 aa7.52□□□□□ -1.21
VPS39-214ENST00000614932 IGHV3-66A0A0C4DH42 116 aa7.52□□□□□ -1.21
VPS39-214ENST00000614932 MGPP08493 103 aa7.52□□□□□ -1.21
VPS39-214ENST00000614932 LINC00846Q9NV44 126 aa7.52□□□□□ -1.21
VPS39-214ENST00000614932 TMEM89A2RUT3 159 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 G3V318 75 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms