RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ZNF71Q9NQZ8 489 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-213ENST00000613099 MSRB1Q9NZV6 116 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 IGKV1D-17A0A075B6S4 117 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 LINC00308Q8TCZ7 52 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 PRRC2AP48634 2157 aaKnown RBP3.79□□□□□ -1.8
VPS13D-213ENST00000613099 ZFHX2Q9C0A1 2572 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-213ENST00000613099 IGKV3-20P01619 116 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 CASC2Q6XLA1 102 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 MUC4Q99102 2169 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 DEFB121Q5J5C9 76 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 COL27A1Q8IZC6 1860 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-213ENST00000613099 NKAPP1Q8N9T2 125 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 K7ENP7 123 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 EBI3Q14213 229 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 PATE2Q6UY27 113 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 NCR3O14931 201 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 NDUFA1O15239 70 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 MYCNOSP40205 109 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 LINC00574Q9H8X3 128 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV1-3A0A0C4DH29 117 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 LOXP28300 417 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-213ENST00000613099 TFF2Q03403 129 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3-73A0A0B4J1V6 119 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 H3BUX3 64 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 PRB1P04280 392 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 DKK1O94907 266 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 SMCPP49901 116 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-213ENST00000613099 PSPHP1O15172 72 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 C14orf177Q52M58 125 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 MDS2Q8NDY4 140 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 LINC00336Q6ZUF6 198 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 SPRY2O43597 315 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 CFHR3Q02985 330 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 CLPSL1A2RUU4 121 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV1-8P0DP01 117 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 B4DSR2 109 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 SLC22A18ASQ8N1D0 253 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 IGKV1-17P01599 117 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 ARTNQ5T4W7 220 aa3.78□□□□□ -1.8
VPS13D-213ENST00000613099 CNFNQ9BYD5 112 aa3.78□□□□□ -1.81
VPS13D-213ENST00000613099 LINC01546A6NGU7 62 aa3.77□□□□□ -1.81
VPS13D-213ENST00000613099 KMT2BQ9UMN6 2715 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-213ENST00000613099 ZNF491Q8N8L2 437 aa3.77□□□□□ -1.81
VPS13D-213ENST00000613099 IGLV2-11P01706 119 aa3.77□□□□□ -1.81
VPS13D-213ENST00000613099 C20orf203Q8NBC4 194 aa3.77□□□□□ -1.81
VPS13D-213ENST00000613099 CHCHD7Q9BUK0 85 aa3.77□□□□□ -1.81
VPS13D-213ENST00000613099 DEFB109BQ30KR1 87 aa3.77□□□□□ -1.81
VPS13D-213ENST00000613099 HIGD2BQ4VC39 106 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 IGFL4Q6B9Z1 124 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 PLA2G5P39877 138 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 URB1-AS1Q96HZ7 61 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 CELA1Q9UNI1 258 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 DAZAP2Q15038 168 aaPredicted RBP3.76□□□□□ -1.81
VPS13D-213ENST00000613099 C9orf47Q6ZRZ4 202 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 IGHV3OR16-12A0A075B7B8 117 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 PRYO14603 147 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 IGHV1-2P23083 117 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 FLNBO75369 2602 aaKnown RBP3.76□□□□□ -1.81
VPS13D-213ENST00000613099 TRGV4A0A0C4DH28 118 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 RFPL3SP0C7P2 107 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 GGNQ86UU5 652 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 TRGV1A0A0A0MS02 117 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 VWCEQ96DN2 955 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 C17orf77Q96MU5 243 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 SAA4P35542 130 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 RPL39P62891 51 aaKnown RBP3.76□□□□□ -1.81
VPS13D-213ENST00000613099 SOSTDC1Q6X4U4 206 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 WDR86Q86TI4 376 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 GAFA1Q96PS6 74 aa3.76□□□□□ -1.81
VPS13D-213ENST00000613099 ZNF561-AS1K7EIQ3 104 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 IGFL2Q6UWQ7 119 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 TMEM254Q8TBM7 123 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 A8MZ25 164 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 LINC00482Q8N8I6 264 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 RPL28P46779 137 aaKnown RBP3.75□□□□□ -1.81
VPS13D-213ENST00000613099 CRIP2P52943 208 aaPredicted RBP3.75□□□□□ -1.81
VPS13D-213ENST00000613099 LINC01565O15544 149 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 IGKV1OR2-108A0A075B7D4 117 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 MIR7-3HGQ8N6C7 128 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 PROK2Q9HC23 129 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 IGHV4-4A0A075B6R2 117 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 GNRH2O43555 120 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 FGF23Q9GZV9 251 aaPredicted RBP3.75□□□□□ -1.81
VPS13D-213ENST00000613099 COX6B1P14854 86 aa3.75□□□□□ -1.81
VPS13D-213ENST00000613099 FAM110DQ8TAY7 271 aaPredicted RBP3.74□□□□□ -1.81
VPS13D-213ENST00000613099 LINC01548A6NM66 108 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 PRR15Q8IV56 129 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 C17orf58Q2M2W7 97 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 LINC00269Q8N2A0 174 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 POM121L12Q8N7R1 296 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 TRBV10-1A0A0K0K1A3 114 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 I3L2K1 104 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 C11orf53Q8IXP5 236 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 RHPN1-AS1Q9BWJ2 59 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 ATP11AUNQ6ZP68 121 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 IGHV1-46P01743 117 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 TET2Q6N021 2002 aaPredicted RBP3.74□□□□□ -1.81
VPS13D-213ENST00000613099 ERC2-IT1O76042 136 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 IBA57-AS1B1ANH7 110 aa3.74□□□□□ -1.81
VPS13D-213ENST00000613099 Q8N6K4 173 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms