RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TRGC1P0CF51 173 aa4.89□□□□□ -1.63
CUX1-219ENST00000606749 BCL2P10415 239 aa4.89□□□□□ -1.63
CUX1-219ENST00000606749 RPL37AP61513 92 aaKnown RBP4.89□□□□□ -1.63
CUX1-219ENST00000606749 PGLYRP4Q96LB8 373 aa4.89□□□□□ -1.63
CUX1-219ENST00000606749 GFRA4Q9GZZ7 299 aa4.89□□□□□ -1.63
CUX1-219ENST00000606749 hDV102S1A0JD36 115 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 SLPIP03973 132 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 CTRLP40313 264 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 CNBPP62633 177 aaKnown RBP4.88□□□□□ -1.63
CUX1-219ENST00000606749 TWIST1Q15672 202 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 SERTAD4-AS1Q5TG53 156 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 SLC51BQ86UW2 128 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 TCTE3Q8IZS6 198 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 OCC1Q8TAD7 63 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 CNFNQ9BYD5 112 aa4.88□□□□□ -1.63
CUX1-219ENST00000606749 K7EN84 100 aa4.87□□□□□ -1.63
CUX1-219ENST00000606749 UBE2L6O14933 153 aa4.87□□□□□ -1.63
CUX1-219ENST00000606749 TAGLN2P37802 199 aaKnown RBP4.87□□□□□ -1.63
CUX1-219ENST00000606749 AMTP48728 403 aa4.87□□□□□ -1.63
CUX1-219ENST00000606749 HNRNPA3P51991 378 aaKnown RBP4.87□□□□□ -1.63
CUX1-219ENST00000606749 CIRBPQ14011 172 aaKnown RBP4.87□□□□□ -1.63
CUX1-219ENST00000606749 COTL1Q14019 142 aa4.87□□□□□ -1.63
CUX1-219ENST00000606749 GATD1Q8NB37 220 aa4.87□□□□□ -1.63
CUX1-219ENST00000606749 DPH3Q96FX2 82 aa4.87□□□□□ -1.63
CUX1-219ENST00000606749 RNASE7Q9H1E1 156 aaKnown RBP4.87□□□□□ -1.63
CUX1-219ENST00000606749 RPP21Q9H633 154 aaKnown RBP4.87□□□□□ -1.63
CUX1-219ENST00000606749 IGHV3-64A0A075B6Q5 118 aa4.86□□□□□ -1.63
CUX1-219ENST00000606749 TRAV26-2A0A0B4J265 109 aa4.86□□□□□ -1.63
CUX1-219ENST00000606749 FOXA3P55318 350 aaPredicted RBP4.86□□□□□ -1.63
CUX1-219ENST00000606749 GTSF1Q8WW33 167 aa4.86□□□□□ -1.63
CUX1-219ENST00000606749 AP5S1Q9NUS5 200 aa4.86□□□□□ -1.63
CUX1-219ENST00000606749 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.85□□□□□ -1.63
CUX1-219ENST00000606749 CFAP161Q6P656 301 aa4.85□□□□□ -1.63
CUX1-219ENST00000606749 Q6ZNX1 250 aa4.85□□□□□ -1.63
CUX1-219ENST00000606749 RPL39LQ96EH5 51 aaKnown RBP4.85□□□□□ -1.63
CUX1-219ENST00000606749 A0A087WYN8 130 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 IGKV3OR2-268A0A0C4DH90 116 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 GAGE12HA6NDE8 117 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 A8MWL6 223 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 H7C423 109 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 NCR2O95944 276 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 CHTF8P0CG12 524 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 TEX261Q6UWH6 196 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 SMIM15Q7Z3B0 74 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 C15orf56Q8N910 161 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 RNF185Q96GF1 192 aa4.84□□□□□ -1.63
CUX1-219ENST00000606749 LRP1Q07954 4544 aaKnown RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 IGKV2-29A2NJV5 120 aaPredicted RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 FAM231BA6NCW3 169 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 SDHAF1A6NFY7 115 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 TMEM250H0YL14 139 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 GATCO43716 136 aaKnown RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 FGF6P10767 208 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 RPS10P46783 165 aaKnown RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 BLOC1S1P78537 153 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 COX6A2Q02221 97 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 AMMECR1LQ6DCA0 310 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 RNASEKQ6P5S7 137 aaKnown RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 Q6ZRU5 148 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 FAM231DQ6ZW35 169 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 LYPD6BQ8NI32 183 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 SPACA4Q8TDM5 124 aa4.83□□□□□ -1.64
CUX1-219ENST00000606749 CHCHD10Q8WYQ3 142 aaPredicted RBP4.83□□□□□ -1.64
CUX1-219ENST00000606749 TRBV6-5A0A0K0K1A5 114 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 I3L3M4 83 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 LCE2BO14633 110 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 GAS8-AS1O95177 125 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 APCSP02743 223 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 MT1HL1P0DM35 61 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 PMCHP20382 165 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 HIGD2BQ4VC39 106 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 ALKAL2Q6UX46 152 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 PLAC8Q9NZF1 115 aa4.82□□□□□ -1.64
CUX1-219ENST00000606749 PKHD1L1Q86WI1 4243 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 NDUFS6O75380 124 aaKnown RBP4.81□□□□□ -1.64
CUX1-219ENST00000606749 ESDP10768 282 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 ZNF25P17030 456 aaPredicted RBP4.81□□□□□ -1.64
CUX1-219ENST00000606749 CEBPGP53567 150 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 FOXI1Q12951 378 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 CT83Q5H943 113 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 OR5A1Q8NGJ0 315 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 PRSS3P2Q8NHM4 247 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 PLA2G2DQ9UNK4 145 aa4.81□□□□□ -1.64
CUX1-219ENST00000606749 GVQW2A0A096LPI5 108 aaPredicted RBP4.8□□□□□ -1.64
CUX1-219ENST00000606749 LINC00959A0A1B0GUT2 108 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 A0A1B0GUT8 65 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 HIGD1CA8MV81 97 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 PHOX2AO14813 284 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 TSHBP01222 138 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 RAB4AP20338 218 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 XCL1P47992 114 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 POLR2KP53803 58 aaKnown RBP4.8□□□□□ -1.64
CUX1-219ENST00000606749 MAJINQ3KP22 176 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 LINC01551Q86U37 167 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 AKAP14Q86UN6 197 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 TSKUQ8WUA8 353 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 BORCS7Q96B45 105 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 BTF3L4Q96K17 158 aa4.8□□□□□ -1.64
CUX1-219ENST00000606749 FAM210AQ96ND0 272 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms