RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MIAQ16674 131 aa12.93□□□□□ -0.34
UPF1-212ENST00000601689 AMN1Q8IY45 258 aa12.93□□□□□ -0.34
UPF1-212ENST00000601689 TRBV6-5A0A0K0K1A5 114 aa12.92□□□□□ -0.34
UPF1-212ENST00000601689 KRTAP10-2P60368 255 aa12.92□□□□□ -0.34
UPF1-212ENST00000601689 RBX1P62877 108 aa12.92□□□□□ -0.34
UPF1-212ENST00000601689 Q8N976 141 aa12.92□□□□□ -0.34
UPF1-212ENST00000601689 NTN5Q8WTR8 489 aaPredicted RBP12.92□□□□□ -0.34
UPF1-212ENST00000601689 A0A1B0GUV1 79 aa12.91□□□□□ -0.34
UPF1-212ENST00000601689 HBBP68871 147 aa12.91□□□□□ -0.34
UPF1-212ENST00000601689 AMMECR1LQ6DCA0 310 aa12.91□□□□□ -0.34
UPF1-212ENST00000601689 LINC00862A6NCI5 91 aa12.9□□□□□ -0.34
UPF1-212ENST00000601689 H7C423 109 aa12.9□□□□□ -0.34
UPF1-212ENST00000601689 IFITM2Q01629 132 aa12.9□□□□□ -0.34
UPF1-212ENST00000601689 Q8N814 137 aa12.9□□□□□ -0.34
UPF1-212ENST00000601689 IGLV5-52A0A0A0MRZ9 124 aa12.89□□□□□ -0.35
UPF1-212ENST00000601689 LRCOL1A6NCL2 159 aa12.89□□□□□ -0.35
UPF1-212ENST00000601689 FAM104BQ5XKR9 115 aa12.89□□□□□ -0.35
UPF1-212ENST00000601689 MRPL54Q6P161 138 aaKnown RBP12.89□□□□□ -0.35
UPF1-212ENST00000601689 ATP5L2Q7Z4Y8 100 aa12.89□□□□□ -0.35
UPF1-212ENST00000601689 LINC00269Q8N2A0 174 aa12.89□□□□□ -0.35
UPF1-212ENST00000601689 RNF185Q96GF1 192 aa12.89□□□□□ -0.35
UPF1-212ENST00000601689 C14orf177Q52M58 125 aa12.88□□□□□ -0.35
UPF1-212ENST00000601689 BTF3L4Q96K17 158 aa12.88□□□□□ -0.35
UPF1-212ENST00000601689 TRAV8-4A0A0B4J246 113 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 VCYO14598 125 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 CKS2P33552 79 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 SMAGPQ0VAQ4 97 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 ENHOQ6UWT2 76 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 DEFB104AQ8WTQ1 72 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 KIR2DL4Q99706 377 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 TMEM70Q9BUB7 260 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 DNAH11Q96DT5 4516 aa12.87□□□□□ -0.35
UPF1-212ENST00000601689 CDK2AP2O75956 126 aa12.86□□□□□ -0.35
UPF1-212ENST00000601689 FCER1GP30273 86 aa12.86□□□□□ -0.35
UPF1-212ENST00000601689 REG3AQ06141 175 aa12.86□□□□□ -0.35
UPF1-212ENST00000601689 RNASEKQ6P5S7 137 aaKnown RBP12.86□□□□□ -0.35
UPF1-212ENST00000601689 BAALCQ8WXS3 180 aa12.86□□□□□ -0.35
UPF1-212ENST00000601689 TMEM101Q96IK0 257 aa12.86□□□□□ -0.35
UPF1-212ENST00000601689 PRR34Q9NV39 138 aa12.86□□□□□ -0.35
UPF1-212ENST00000601689 TMEM218A2RU14 115 aa12.85□□□□□ -0.35
UPF1-212ENST00000601689 GCSHP23434 173 aa12.85□□□□□ -0.35
UPF1-212ENST00000601689 SUMO2P61956 95 aaKnown RBP12.85□□□□□ -0.35
UPF1-212ENST00000601689 MRPL51Q4U2R6 128 aaKnown RBP12.85□□□□□ -0.35
UPF1-212ENST00000601689 CLPSL2Q6UWE3 100 aa12.85□□□□□ -0.35
UPF1-212ENST00000601689 TRBV27A0A0K0K1C4 114 aa12.84□□□□□ -0.35
UPF1-212ENST00000601689 TCAPO15273 167 aa12.84□□□□□ -0.35
UPF1-212ENST00000601689 PPBPP02775 128 aa12.84□□□□□ -0.35
UPF1-212ENST00000601689 ZNF25P17030 456 aaPredicted RBP12.84□□□□□ -0.35
UPF1-212ENST00000601689 COMMD7Q86VX2 200 aa12.84□□□□□ -0.35
UPF1-212ENST00000601689 DYNC1H1Q14204 4646 aaKnown RBP12.84□□□□□ -0.35
UPF1-212ENST00000601689 SMKR1H3BMG3 65 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 LECT2O14960 151 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 HLA-DQA1P01909 254 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 RPS10P46783 165 aaKnown RBP12.83□□□□□ -0.36
UPF1-212ENST00000601689 POLR2KP53803 58 aaKnown RBP12.83□□□□□ -0.36
UPF1-212ENST00000601689 C20orf203Q8NBC4 194 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 TMEM18Q96B42 140 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 C20orf78Q9BR46 151 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 SEC11CQ9BY50 192 aa12.83□□□□□ -0.36
UPF1-212ENST00000601689 CTDSP1Q9GZU7 261 aa12.82□□□□□ -0.36
UPF1-212ENST00000601689 TMEM242Q9NWH2 141 aa12.82□□□□□ -0.36
UPF1-212ENST00000601689 IGLV4-60A0A075B6I1 120 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.81□□□□□ -0.36
UPF1-212ENST00000601689 A0A1B0GXF2 115 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 IGKV2-29A2NJV5 120 aaPredicted RBP12.81□□□□□ -0.36
UPF1-212ENST00000601689 C7orf77A4D0Y5 90 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 GAS8-AS1O95177 125 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 FGF6P10767 208 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 DGAT2L7PQ6IED9 249 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 IMMP2LQ96T52 175 aa12.81□□□□□ -0.36
UPF1-212ENST00000601689 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.8□□□□□ -0.36
UPF1-212ENST00000601689 FUSP35637 526 aaKnown RBP eCLIP12.8□□□□□ -0.36
UPF1-212ENST00000601689 ORMDL3Q8N138 153 aa12.8□□□□□ -0.36
UPF1-212ENST00000601689 MAPKAPK5-AS1Q8N8E1 139 aa12.8□□□□□ -0.36
UPF1-212ENST00000601689 NRACQ8N912 160 aa12.8□□□□□ -0.36
UPF1-212ENST00000601689 TRBV24-1A0A075B6N3 115 aa12.79□□□□□ -0.36
UPF1-212ENST00000601689 D6R8Y8 96 aa12.79□□□□□ -0.36
UPF1-212ENST00000601689 PHOX2AO14813 284 aa12.79□□□□□ -0.36
UPF1-212ENST00000601689 TSHBP01222 138 aa12.79□□□□□ -0.36
UPF1-212ENST00000601689 S100PP25815 95 aa12.79□□□□□ -0.36
UPF1-212ENST00000601689 OR5A1Q8NGJ0 315 aa12.79□□□□□ -0.36
UPF1-212ENST00000601689 IGLV10-54A0A075B6I4 117 aa12.78□□□□□ -0.36
UPF1-212ENST00000601689 IGKV3OR2-268A0A0C4DH90 116 aa12.78□□□□□ -0.36
UPF1-212ENST00000601689 TNFRSF6BO95407 300 aa12.78□□□□□ -0.36
UPF1-212ENST00000601689 ESDP10768 282 aa12.78□□□□□ -0.36
UPF1-212ENST00000601689 TMEM136Q6ZRR5 245 aa12.78□□□□□ -0.36
UPF1-212ENST00000601689 ADCYAP1P18509 176 aa12.76□□□□□ -0.37
UPF1-212ENST00000601689 RPL32P62910 135 aaKnown RBP12.76□□□□□ -0.37
UPF1-212ENST00000601689 WFDC2Q14508 124 aa12.76□□□□□ -0.37
UPF1-212ENST00000601689 CLRN3Q8NCR9 226 aa12.76□□□□□ -0.37
UPF1-212ENST00000601689 LAMTOR2Q9Y2Q5 125 aa12.76□□□□□ -0.37
UPF1-212ENST00000601689 TRAV9-1A0A075B6T8 112 aa12.75□□□□□ -0.37
UPF1-212ENST00000601689 RAB5AP20339 215 aa12.75□□□□□ -0.37
UPF1-212ENST00000601689 CFAP161Q6P656 301 aa12.75□□□□□ -0.37
UPF1-212ENST00000601689 USP17L23D6RBM5 183 aa12.74□□□□□ -0.37
UPF1-212ENST00000601689 MRPL52Q86TS9 123 aaKnown RBP12.74□□□□□ -0.37
UPF1-212ENST00000601689 PRELID3AQ96N28 172 aa12.74□□□□□ -0.37
UPF1-212ENST00000601689 SMIM2Q9BVW6 85 aa12.74□□□□□ -0.37
UPF1-212ENST00000601689 LRP1BQ9NZR2 4599 aa12.74□□□□□ -0.37
UPF1-212ENST00000601689 NDUFA5Q16718 116 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms