RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 A0A087WWL8 130 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 H3BNG1 76 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 LEPROTL1O95214 131 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 IGHV3-53P01767 116 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 C3orf79P0CE67 100 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 FAM104BQ5XKR9 115 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 FA2HQ7L5A8 372 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 SMIM15Q7Z3B0 74 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 UBE2DNLQ8IWF7 75 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 ORMDL3Q8N138 153 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 Q8N1X5 172 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 C14orf178Q8N769 122 aaPredicted RBP6.05□□□□□ -1.44
TRIM28-214ENST00000600840 RNF185Q96GF1 192 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 MAP1LC3CQ9BXW4 147 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 AP5S1Q9NUS5 200 aa6.05□□□□□ -1.44
TRIM28-214ENST00000600840 TRAV9-2A0A087WT02 112 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 IGHV3-73A0A0B4J1V6 119 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 TRBV6-4A0A1B0GX49 114 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 HSBP1L1C9JCN9 74 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 F5H768 121 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 CDK2AP2O75956 126 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 TWIST1Q15672 202 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 SPATA12Q7Z6I5 190 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 SLC25A29Q8N8R3 303 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 ST20Q9HBF5 79 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 PRO0255Q9UI72 69 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 HHLA3Q9XRX5 114 aa6.04□□□□□ -1.44
TRIM28-214ENST00000600840 IGHV1-24A0A0C4DH33 117 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 C16orf90A8MZG2 172 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 M0QY20 66 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 RHODO00212 210 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 GAS8-AS1O95177 125 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 LINC00694P0DN24 101 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 SPATA45Q537H7 98 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 Q8N976 141 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 PRSS3P2Q8NHM4 247 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 PMCHL2Q9BQD1 86 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 DPH3P1Q9H4G8 78 aa6.03□□□□□ -1.44
TRIM28-214ENST00000600840 NXT2Q9NPJ8 142 aaKnown RBP6.03□□□□□ -1.44
TRIM28-214ENST00000600840 HERC1Q15751 4861 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 TRAV26-1A0A087WT03 109 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 A0A096LPF7 62 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 LOC100131303A0A0U1RQF7 123 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 SYS1-DBNDD2H3BUS1 97 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 TNP2Q05952 138 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 FAM19A2Q8N3H0 131 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 ZNRF2Q8NHG8 242 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 PRELID3AQ96N28 172 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 AP1S3Q96PC3 154 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 MRPS16Q9Y3D3 137 aaKnown RBP6.02□□□□□ -1.45
TRIM28-214ENST00000600840 PAM16Q9Y3D7 125 aa6.02□□□□□ -1.45
TRIM28-214ENST00000600840 TRGV4A0A0C4DH28 118 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 A0A0J9YY99 117 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 LINC01546A6NGU7 62 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 LINC01549A6NIU2 74 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 K7EMI3 77 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 PAX4O43316 350 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 NUDT3O95989 172 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 PPP1R17O96001 155 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 IGLC3P0DOY3 106 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 CKS2P33552 79 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 FAM74A4Q5TZK3 123 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 SUMO4Q6EEV6 95 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 AMN1Q8IY45 258 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 MAP1LC3AQ9H492 121 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 LINC00588Q9Y4M8 146 aa6.01□□□□□ -1.45
TRIM28-214ENST00000600840 TRBV10-1A0A0K0K1A3 114 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 PRSS47A8MTI9 375 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 K7EQD1 137 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 HBDP02042 147 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 HNRNPA3P51991 378 aaKnown RBP6□□□□□ -1.45
TRIM28-214ENST00000600840 MRPL51Q4U2R6 128 aaKnown RBP6□□□□□ -1.45
TRIM28-214ENST00000600840 COL5A1-AS1Q5SY13 56 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 C1orf134Q5TEV5 83 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 C15orf53Q8NAA6 179 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 URB1-AS1Q96HZ7 61 aa6□□□□□ -1.45
TRIM28-214ENST00000600840 TRAV26-2A0A0B4J265 109 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 TRBV6-5A0A0K0K1A5 114 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 NBDYA0A0U1RRE5 68 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 D6R8Y8 96 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 GYPEP15421 78 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 G0S2P27469 103 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 RHOHQ15669 191 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 LINC01545Q5VT33 79 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 LINC00469Q8N7U9 141 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 NRACQ8N912 160 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 NEXN-AS1Q8NBZ9 246 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 MRAP2Q96G30 205 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 SNHG12Q9BXW3 62 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 KRTAP1-5Q9BYS1 174 aa5.99□□□□□ -1.45
TRIM28-214ENST00000600840 LRP1BQ9NZR2 4599 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 SMIM17P0DL12 118 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 UBE2D3P61077 147 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 UBE2D2P62837 147 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 ZNF56Q15929 161 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 MRPL23Q16540 153 aaKnown RBP5.98□□□□□ -1.45
TRIM28-214ENST00000600840 ESRGQ1W209 222 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 LYPD5Q6UWN5 251 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 Q6ZN92 141 aa5.98□□□□□ -1.45
TRIM28-214ENST00000600840 PRADC1Q9BSG0 188 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms