RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 DEFB104AQ8WTQ1 72 aa13.08□□□□□ -0.32
UPF1-209ENST00000600310 C20orf78Q9BR46 151 aa13.08□□□□□ -0.32
UPF1-209ENST00000600310 TMEM243Q9BU79 118 aa13.08□□□□□ -0.32
UPF1-209ENST00000600310 CHCHD7Q9BUK0 85 aa13.08□□□□□ -0.32
UPF1-209ENST00000600310 TMEM262E9PQX1 116 aa13.07□□□□□ -0.32
UPF1-209ENST00000600310 VCYO14598 125 aa13.07□□□□□ -0.32
UPF1-209ENST00000600310 TNFRSF6BO95407 300 aa13.07□□□□□ -0.32
UPF1-209ENST00000600310 AMTP48728 403 aa13.07□□□□□ -0.32
UPF1-209ENST00000600310 PKIAP61925 76 aa13.07□□□□□ -0.32
UPF1-209ENST00000600310 COX19Q49B96 90 aa13.07□□□□□ -0.32
UPF1-209ENST00000600310 A0A087WX48 190 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 IBA57-AS1B1ANH7 110 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 RTL8CO15255 209 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 NPYP01303 97 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 HLA-DQA1P01909 254 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 RPL32P62910 135 aaKnown RBP13.06□□□□□ -0.32
UPF1-209ENST00000600310 ELOBQ15370 118 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 GNB1LQ9BYB4 327 aa13.06□□□□□ -0.32
UPF1-209ENST00000600310 PRELID3AQ96N28 172 aa13.05□□□□□ -0.32
UPF1-209ENST00000600310 LAMTOR2Q9Y2Q5 125 aa13.05□□□□□ -0.32
UPF1-209ENST00000600310 TGIF2-C20orf24A0A0A6YYL0 155 aa13.04□□□□□ -0.32
UPF1-209ENST00000600310 TSHBP01222 138 aa13.04□□□□□ -0.32
UPF1-209ENST00000600310 APCSP02743 223 aa13.04□□□□□ -0.32
UPF1-209ENST00000600310 GAGE6Q13070 117 aa13.04□□□□□ -0.32
UPF1-209ENST00000600310 LAGE3Q14657 143 aa13.03□□□□□ -0.32
UPF1-209ENST00000600310 MPV17L2Q567V2 206 aa13.03□□□□□ -0.32
UPF1-209ENST00000600310 MT-ND6P03923 174 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 ESDP10768 282 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 LINC00336Q6ZUF6 198 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 NFE4Q86UQ8 179 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 YPEL4Q96NS1 127 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 KIR2DL4Q99706 377 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 SMIM2Q9BVW6 85 aa13.02□□□□□ -0.33
UPF1-209ENST00000600310 UBE2L6O14933 153 aa13.01□□□□□ -0.33
UPF1-209ENST00000600310 RBX1P62877 108 aa13.01□□□□□ -0.33
UPF1-209ENST00000600310 SMCO4Q9NRQ5 59 aa13.01□□□□□ -0.33
UPF1-209ENST00000600310 KLK12Q9UKR0 248 aa13.01□□□□□ -0.33
UPF1-209ENST00000600310 A0A1B0GUV1 79 aa13□□□□□ -0.33
UPF1-209ENST00000600310 PRSS47A8MTI9 375 aa13□□□□□ -0.33
UPF1-209ENST00000600310 H7C423 109 aa13□□□□□ -0.33
UPF1-209ENST00000600310 Q6ZRN7 208 aaPredicted RBP13□□□□□ -0.33
UPF1-209ENST00000600310 Q8N976 141 aa13□□□□□ -0.33
UPF1-209ENST00000600310 FCER1GP30273 86 aa12.99□□□□□ -0.33
UPF1-209ENST00000600310 KIAA1644Q3SXP7 199 aa12.99□□□□□ -0.33
UPF1-209ENST00000600310 MAP1LC3AQ9H492 121 aa12.99□□□□□ -0.33
UPF1-209ENST00000600310 TRAV8-3A0A0A6YYJ7 113 aa12.98□□□□□ -0.33
UPF1-209ENST00000600310 TCAPO15273 167 aa12.98□□□□□ -0.33
UPF1-209ENST00000600310 CBLN2Q8IUK8 224 aa12.98□□□□□ -0.33
UPF1-209ENST00000600310 MRPL18Q9H0U6 180 aaKnown RBP12.98□□□□□ -0.33
UPF1-209ENST00000600310 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.97□□□□□ -0.33
UPF1-209ENST00000600310 IGKV2-29A2NJV5 120 aaPredicted RBP12.97□□□□□ -0.33
UPF1-209ENST00000600310 PRSS29PA6NIE9 313 aa12.97□□□□□ -0.33
UPF1-209ENST00000600310 ANGP03950 147 aaKnown RBP12.97□□□□□ -0.33
UPF1-209ENST00000600310 C20orf203Q8NBC4 194 aa12.97□□□□□ -0.33
UPF1-209ENST00000600310 Q9HAA7 133 aa12.97□□□□□ -0.33
UPF1-209ENST00000600310 IGLV4-60A0A075B6I1 120 aa12.96□□□□□ -0.33
UPF1-209ENST00000600310 FABP9Q0Z7S8 132 aa12.96□□□□□ -0.33
UPF1-209ENST00000600310 UBE2WQ96B02 151 aa12.96□□□□□ -0.33
UPF1-209ENST00000600310 LOC389332A0A1B0GUA5 103 aa12.95□□□□□ -0.34
UPF1-209ENST00000600310 FGF6P10767 208 aa12.95□□□□□ -0.34
UPF1-209ENST00000600310 Q0VG73 95 aa12.95□□□□□ -0.34
UPF1-209ENST00000600310 TRAPPC1Q9Y5R8 145 aa12.95□□□□□ -0.34
UPF1-209ENST00000600310 FRAS1Q86XX4 4008 aa12.95□□□□□ -0.34
UPF1-209ENST00000600310 TNP2Q05952 138 aa12.94□□□□□ -0.34
UPF1-209ENST00000600310 AMMECR1LQ6DCA0 310 aa12.94□□□□□ -0.34
UPF1-209ENST00000600310 ENHOQ6UWT2 76 aa12.94□□□□□ -0.34
UPF1-209ENST00000600310 Q8N8P6 123 aa12.94□□□□□ -0.34
UPF1-209ENST00000600310 ALKBH7Q9BT30 221 aaPredicted RBP12.94□□□□□ -0.34
UPF1-209ENST00000600310 PRR34Q9NV39 138 aa12.94□□□□□ -0.34
UPF1-209ENST00000600310 CRPP02741 224 aa12.93□□□□□ -0.34
UPF1-209ENST00000600310 ZNF25P17030 456 aaPredicted RBP12.93□□□□□ -0.34
UPF1-209ENST00000600310 RAB5AP20339 215 aa12.93□□□□□ -0.34
UPF1-209ENST00000600310 RNASEKQ6P5S7 137 aaKnown RBP12.93□□□□□ -0.34
UPF1-209ENST00000600310 LINC00269Q8N2A0 174 aa12.93□□□□□ -0.34
UPF1-209ENST00000600310 TM2D2Q9BX73 214 aa12.93□□□□□ -0.34
UPF1-209ENST00000600310 MRPL52Q86TS9 123 aaKnown RBP12.92□□□□□ -0.34
UPF1-209ENST00000600310 RMI2Q96E14 147 aa12.92□□□□□ -0.34
UPF1-209ENST00000600310 NXT2Q9NPJ8 142 aaKnown RBP12.92□□□□□ -0.34
UPF1-209ENST00000600310 TMEM18Q96B42 140 aa12.91□□□□□ -0.34
UPF1-209ENST00000600310 K7EMI3 77 aa12.9□□□□□ -0.34
UPF1-209ENST00000600310 REG3AQ06141 175 aa12.9□□□□□ -0.34
UPF1-209ENST00000600310 MIAQ16674 131 aa12.9□□□□□ -0.34
UPF1-209ENST00000600310 CLPSL2Q6UWE3 100 aa12.9□□□□□ -0.34
UPF1-209ENST00000600310 CSDC2Q9Y534 153 aaKnown RBP12.9□□□□□ -0.34
UPF1-209ENST00000600310 COX11Q9Y6N1 276 aa12.9□□□□□ -0.34
UPF1-209ENST00000600310 DNAH10Q8IVF4 4471 aa12.9□□□□□ -0.34
UPF1-209ENST00000600310 PSCAO43653 123 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 IFI27P40305 119 aaPredicted RBP12.89□□□□□ -0.35
UPF1-209ENST00000600310 SMAGPQ0VAQ4 97 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 OR5A1Q8NGJ0 315 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 TMEM101Q96IK0 257 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 TIMM21Q9BVV7 248 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 UBE2D4Q9Y2X8 147 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 DNAH2Q9P225 4427 aa12.89□□□□□ -0.35
UPF1-209ENST00000600310 IGKV2D-24A0A075B6R9 120 aa12.88□□□□□ -0.35
UPF1-209ENST00000600310 A0A1B0GVY2 172 aa12.88□□□□□ -0.35
UPF1-209ENST00000600310 DGAT2L7PQ6IED9 249 aa12.87□□□□□ -0.35
UPF1-209ENST00000600310 PRSS3P2Q8NHM4 247 aa12.87□□□□□ -0.35
UPF1-209ENST00000600310 C1orf43Q9BWL3 253 aa12.87□□□□□ -0.35
UPF1-209ENST00000600310 CDC42SE2Q9NRR3 84 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 196.1 ms