RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SUMO4Q6EEV6 95 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 SPINK6Q6UWN8 80 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 BAGE2Q86Y30 109 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 C9orf62Q8N4C0 152 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 STPG4Q8N801 248 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.78□□□□□ -1.8
VRK3-220ENST00000600259 GTSF1Q8WW33 167 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 TMEM243Q9BU79 118 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 MAP1LC3BQ9GZQ8 125 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 A0A096LNI7 61 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 BORCS7-ASMTA0A0B4J1R7 106 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 GAGE12HA6NDE8 117 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 S100A9P06702 114 aaKnown RBP3.77□□□□□ -1.81
VRK3-220ENST00000600259 AKR1C3P42330 323 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 MAJINQ3KP22 176 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 CFAP161Q6P656 301 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 TEX261Q6UWH6 196 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 LYPD6BQ8NI32 183 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 MBD3L1Q8WWY6 194 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 PGLYRP4Q96LB8 373 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 DPH3P1Q9H4G8 78 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 MED9Q9NWA0 146 aa3.77□□□□□ -1.81
VRK3-220ENST00000600259 GVQW2A0A096LPI5 108 aaPredicted RBP3.76□□□□□ -1.81
VRK3-220ENST00000600259 IGKV2-24A0A0C4DH68 120 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 SCO2A0A1W2PP80 73 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 GIPP09681 153 aaPredicted RBP3.76□□□□□ -1.81
VRK3-220ENST00000600259 HIGD2BQ4VC39 106 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 AKR1C8PQ5T2L2 129 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 RASL11AQ6T310 242 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 REG3GQ6UW15 175 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 TMUB2Q71RG4 321 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 STOML3Q8TAV4 291 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 AP1S3Q96PC3 154 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 NIT2Q9NQR4 276 aa3.76□□□□□ -1.81
VRK3-220ENST00000600259 TMA7Q9Y2S6 64 aaKnown RBP3.76□□□□□ -1.81
VRK3-220ENST00000600259 C19orf71A6NCJ1 209 aa3.75□□□□□ -1.81
VRK3-220ENST00000600259 H7C1H1 209 aa3.75□□□□□ -1.81
VRK3-220ENST00000600259 SMIM17P0DL12 118 aa3.75□□□□□ -1.81
VRK3-220ENST00000600259 FOXI1Q12951 378 aa3.75□□□□□ -1.81
VRK3-220ENST00000600259 CHCHD10Q8WYQ3 142 aaPredicted RBP3.75□□□□□ -1.81
VRK3-220ENST00000600259 MED28Q9H204 178 aa3.75□□□□□ -1.81
VRK3-220ENST00000600259 MUC2Q02817 5179 aa3.75□□□□□ -1.81
VRK3-220ENST00000600259 FXYD6-FXYD2A0A087WZ82 144 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 A0A1W2PNN7 141 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 FAM231BA6NCW3 169 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 MGPP08493 103 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 NTF3P20783 257 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 RPL35P42766 123 aaKnown RBP3.74□□□□□ -1.81
VRK3-220ENST00000600259 SULT1A2P50226 295 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 RAB14P61106 215 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 CTAG1AP78358 180 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 Q6ZRP5 223 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 FER1L6-AS1Q8NA97 138 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 GATD1Q8NB37 220 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 SFT2D1Q8WV19 159 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 C11orf52Q96A22 123 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 LINC00526Q96FQ7 95 aa3.74□□□□□ -1.81
VRK3-220ENST00000600259 IGKV3OR2-268A0A0C4DH90 116 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 F2Z2F3 143 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 AMTP48728 403 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 CACNG7P62955 275 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 CCL20P78556 96 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 COTL1Q14019 142 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 LYZL1Q6UWQ5 148 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 COMMD7Q86VX2 200 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 OR2D3Q8NGH3 330 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 KRTAP9-2Q9BYQ4 174 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 LINC00474Q9P2X8 69 aa3.73□□□□□ -1.81
VRK3-220ENST00000600259 TRBV20OR9-2A0A075B6H5 130 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 LINC00959A0A1B0GUT2 108 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 A0A1B0GV50 99 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 RAB19A4D1S5 217 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 H7C423 109 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 UBE2L6O14933 153 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 FGF6P10767 208 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 ESDP10768 282 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 RPS20P60866 119 aaKnown RBP3.72□□□□□ -1.81
VRK3-220ENST00000600259 KCNRGQ8N5I3 272 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 OR5A1Q8NGJ0 315 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 FAM213BQ8TBF2 198 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 CNFNQ9BYD5 112 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 PSORS1C2Q9UIG4 136 aa3.72□□□□□ -1.81
VRK3-220ENST00000600259 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.71□□□□□ -1.82
VRK3-220ENST00000600259 TRAV26-2A0A0B4J265 109 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 IGHV1-58A0A0C4DH39 117 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 LOC100996750A0A140TA64 210 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 IGKV2-29A2NJV5 120 aaPredicted RBP3.71□□□□□ -1.82
VRK3-220ENST00000600259 HMSDA8MTL9 139 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 UMAD1C9J7I0 102 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 CCL25O15444 150 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 ARPC5O15511 151 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 NCR2O95944 276 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 TRGC1P0CF51 173 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 CTRLP40313 264 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 PTTG1IPP53801 180 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 FOXA3P55318 350 aaPredicted RBP3.71□□□□□ -1.82
VRK3-220ENST00000600259 SYCNQ0VAF6 134 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 CENPWQ5EE01 88 aa3.71□□□□□ -1.82
VRK3-220ENST00000600259 RPL39LQ96EH5 51 aaKnown RBP3.71□□□□□ -1.82
VRK3-220ENST00000600259 CARD19Q96LW7 228 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms