RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 ATRAIDQ6UW56 229 aa12.3□□□□□ -0.44
LIG1-216ENST00000598938 TRBV27A0A0K0K1C4 114 aa12.29□□□□□ -0.44
LIG1-216ENST00000598938 BTF3P20290 206 aaKnown RBP12.29□□□□□ -0.44
LIG1-216ENST00000598938 Q8N3U1 123 aa12.29□□□□□ -0.44
LIG1-216ENST00000598938 C10orf126Q8N4M7 172 aa12.29□□□□□ -0.44
LIG1-216ENST00000598938 DNAH11Q96DT5 4516 aa12.29□□□□□ -0.44
LIG1-216ENST00000598938 I3L3M4 83 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 TNFRSF6BO95407 300 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 IGHV3-30P01768 117 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 IGHV3-33P01772 117 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 IGHV3-30-3P0DP02 117 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 IGHV3-30-5P0DP03 117 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 PMCHP20382 165 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 SUMO2P61956 95 aaKnown RBP12.28□□□□□ -0.44
LIG1-216ENST00000598938 C1orf134Q5TEV5 83 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 ORMDL3Q8N138 153 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 C6orf223Q8N319 242 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 DEFB104AQ8WTQ1 72 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 C20orf78Q9BR46 151 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 CHCHD5Q9BSY4 110 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 CHCHD7Q9BUK0 85 aa12.28□□□□□ -0.44
LIG1-216ENST00000598938 PHOX2AO14813 284 aa12.27□□□□□ -0.45
LIG1-216ENST00000598938 PKIAP61925 76 aa12.27□□□□□ -0.45
LIG1-216ENST00000598938 RPL32P62910 135 aaKnown RBP12.27□□□□□ -0.45
LIG1-216ENST00000598938 ELOBQ15370 118 aa12.27□□□□□ -0.45
LIG1-216ENST00000598938 GNB1LQ9BYB4 327 aa12.27□□□□□ -0.45
LIG1-216ENST00000598938 PKD1P98161 4303 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 VCYO14598 125 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 TSHBP01222 138 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 NPYP01303 97 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 HLA-DQA1P01909 254 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 AMTP48728 403 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 COX19Q49B96 90 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 PRELID3AQ96N28 172 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 TMEM243Q9BU79 118 aa12.26□□□□□ -0.45
LIG1-216ENST00000598938 DYNC1H1Q14204 4646 aaKnown RBP12.26□□□□□ -0.45
LIG1-216ENST00000598938 A0A087WX48 190 aa12.25□□□□□ -0.45
LIG1-216ENST00000598938 IBA57-AS1B1ANH7 110 aa12.25□□□□□ -0.45
LIG1-216ENST00000598938 APCSP02743 223 aa12.25□□□□□ -0.45
LIG1-216ENST00000598938 LAMTOR2Q9Y2Q5 125 aa12.25□□□□□ -0.45
LIG1-216ENST00000598938 TGIF2-C20orf24A0A0A6YYL0 155 aa12.24□□□□□ -0.45
LIG1-216ENST00000598938 TMEM262E9PQX1 116 aa12.24□□□□□ -0.45
LIG1-216ENST00000598938 GAGE6Q13070 117 aa12.24□□□□□ -0.45
LIG1-216ENST00000598938 MPV17L2Q567V2 206 aa12.24□□□□□ -0.45
LIG1-216ENST00000598938 YPEL4Q96NS1 127 aa12.24□□□□□ -0.45
LIG1-216ENST00000598938 LAGE3Q14657 143 aa12.23□□□□□ -0.45
LIG1-216ENST00000598938 SMIM2Q9BVW6 85 aa12.23□□□□□ -0.45
LIG1-216ENST00000598938 PRSS47A8MTI9 375 aa12.22□□□□□ -0.45
LIG1-216ENST00000598938 MT-ND6P03923 174 aa12.22□□□□□ -0.45
LIG1-216ENST00000598938 ESDP10768 282 aa12.22□□□□□ -0.45
LIG1-216ENST00000598938 Q6ZRN7 208 aaPredicted RBP12.22□□□□□ -0.45
LIG1-216ENST00000598938 RBX1P62877 108 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 NFE4Q86UQ8 179 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 CBLN2Q8IUK8 224 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 Q8N976 141 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 KIR2DL4Q99706 377 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 KRTAP4-5Q9BYR2 181 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 SMCO4Q9NRQ5 59 aa12.21□□□□□ -0.45
LIG1-216ENST00000598938 A0A1B0GUV1 79 aa12.2□□□□□ -0.46
LIG1-216ENST00000598938 H7C423 109 aa12.2□□□□□ -0.46
LIG1-216ENST00000598938 UBE2L6O14933 153 aa12.2□□□□□ -0.46
LIG1-216ENST00000598938 FCER1GP30273 86 aa12.2□□□□□ -0.46
LIG1-216ENST00000598938 KIAA1644Q3SXP7 199 aa12.2□□□□□ -0.46
LIG1-216ENST00000598938 MRPL18Q9H0U6 180 aaKnown RBP12.2□□□□□ -0.46
LIG1-216ENST00000598938 KLK12Q9UKR0 248 aa12.2□□□□□ -0.46
LIG1-216ENST00000598938 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.19□□□□□ -0.46
LIG1-216ENST00000598938 IGKV2-29A2NJV5 120 aaPredicted RBP12.19□□□□□ -0.46
LIG1-216ENST00000598938 TCAPO15273 167 aa12.19□□□□□ -0.46
LIG1-216ENST00000598938 ANGP03950 147 aaKnown RBP12.18□□□□□ -0.46
LIG1-216ENST00000598938 MAP1LC3AQ9H492 121 aa12.18□□□□□ -0.46
LIG1-216ENST00000598938 Q9HAA7 133 aa12.18□□□□□ -0.46
LIG1-216ENST00000598938 TRAV8-3A0A0A6YYJ7 113 aa12.17□□□□□ -0.46
LIG1-216ENST00000598938 CDK2AP2O75956 126 aa12.17□□□□□ -0.46
LIG1-216ENST00000598938 C20orf203Q8NBC4 194 aa12.17□□□□□ -0.46
LIG1-216ENST00000598938 IGLV4-60A0A075B6I1 120 aa12.16□□□□□ -0.46
LIG1-216ENST00000598938 FABP9Q0Z7S8 132 aa12.16□□□□□ -0.46
LIG1-216ENST00000598938 ALKBH7Q9BT30 221 aaPredicted RBP12.16□□□□□ -0.46
LIG1-216ENST00000598938 PRR34Q9NV39 138 aa12.16□□□□□ -0.46
LIG1-216ENST00000598938 LOC389332A0A1B0GUA5 103 aa12.15□□□□□ -0.46
LIG1-216ENST00000598938 FGF6P10767 208 aa12.15□□□□□ -0.46
LIG1-216ENST00000598938 ENHOQ6UWT2 76 aa12.15□□□□□ -0.46
LIG1-216ENST00000598938 Q8N8P6 123 aa12.15□□□□□ -0.46
LIG1-216ENST00000598938 UBE2WQ96B02 151 aa12.15□□□□□ -0.46
LIG1-216ENST00000598938 TRAPPC1Q9Y5R8 145 aa12.15□□□□□ -0.46
LIG1-216ENST00000598938 ZNF25P17030 456 aaPredicted RBP12.14□□□□□ -0.47
LIG1-216ENST00000598938 TNP2Q05952 138 aa12.14□□□□□ -0.47
LIG1-216ENST00000598938 Q0VG73 95 aa12.14□□□□□ -0.47
LIG1-216ENST00000598938 AMMECR1LQ6DCA0 310 aa12.14□□□□□ -0.47
LIG1-216ENST00000598938 MRPL52Q86TS9 123 aaKnown RBP12.14□□□□□ -0.47
LIG1-216ENST00000598938 LINC00269Q8N2A0 174 aa12.14□□□□□ -0.47
LIG1-216ENST00000598938 CRPP02741 224 aa12.13□□□□□ -0.47
LIG1-216ENST00000598938 NXT2Q9NPJ8 142 aaKnown RBP12.13□□□□□ -0.47
LIG1-216ENST00000598938 RAB5AP20339 215 aa12.12□□□□□ -0.47
LIG1-216ENST00000598938 RNASEKQ6P5S7 137 aaKnown RBP12.12□□□□□ -0.47
LIG1-216ENST00000598938 TM2D2Q9BX73 214 aa12.12□□□□□ -0.47
LIG1-216ENST00000598938 HSPG2P98160 4391 aa12.12□□□□□ -0.47
LIG1-216ENST00000598938 REG3AQ06141 175 aa12.11□□□□□ -0.47
LIG1-216ENST00000598938 MIAQ16674 131 aa12.11□□□□□ -0.47
LIG1-216ENST00000598938 CLPSL2Q6UWE3 100 aa12.11□□□□□ -0.47
LIG1-216ENST00000598938 TMEM18Q96B42 140 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms