RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 SNCGO76070 127 aa9.65□□□□□ -0.86
VRK3-209ENST00000594948 HOXD3P31249 432 aaPredicted RBP9.65□□□□□ -0.86
VRK3-209ENST00000594948 ADAMTSL4-AS1Q5T5F5 129 aa9.65□□□□□ -0.86
VRK3-209ENST00000594948 ANAPC13Q9BS18 74 aa9.65□□□□□ -0.86
VRK3-209ENST00000594948 ATRXP46100 2492 aa9.65□□□□□ -0.87
VRK3-209ENST00000594948 PRSS2P07478 247 aa9.64□□□□□ -0.87
VRK3-209ENST00000594948 DEFB121Q5J5C9 76 aa9.64□□□□□ -0.87
VRK3-209ENST00000594948 TMEM61Q8N0U2 210 aa9.64□□□□□ -0.87
VRK3-209ENST00000594948 NDUFA1O15239 70 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 IGHV3-53P01767 116 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 GAGE2BQ13066 116 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 BEAN1Q3B7T3 259 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 GAGE2EQ4V326 116 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 C2orf82Q6UX34 121 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 LINC01356Q8N9X3 169 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 DUX3Q96PT4 197 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 GAGE2DQ9UEU5 116 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 IGF2RP11717 2491 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 SPTAN1Q13813 2472 aaKnown RBP9.63□□□□□ -0.87
VRK3-209ENST00000594948 FAM240AA0A1B0GVK7 77 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 ADARB2-AS1A8MUL3 147 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 H7C423 109 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 LST1O00453 97 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 PROK1P58294 105 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 DUX5Q96PT3 197 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 VPREB3Q9UKI3 123 aa9.63□□□□□ -0.87
VRK3-209ENST00000594948 IGHV3-73A0A0B4J1V6 119 aa9.62□□□□□ -0.87
VRK3-209ENST00000594948 KNCNA6PVL3 124 aa9.62□□□□□ -0.87
VRK3-209ENST00000594948 DEFB131AP59861 70 aa9.62□□□□□ -0.87
VRK3-209ENST00000594948 CEMP1Q6PRD7 247 aaPredicted RBP9.62□□□□□ -0.87
VRK3-209ENST00000594948 CLUHP3Q96NS8 147 aa9.62□□□□□ -0.87
VRK3-209ENST00000594948 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.62□□□□□ -0.872e-6■■■■□ 21.2
VRK3-209ENST00000594948 RBMY1BA6NDE4 496 aaKnown RBP9.61□□□□□ -0.87
VRK3-209ENST00000594948 RBMY1EA6NEQ0 496 aaKnown RBP9.61□□□□□ -0.87
VRK3-209ENST00000594948 RS1O15537 224 aa9.61□□□□□ -0.87
VRK3-209ENST00000594948 RBMY1DP0C7P1 496 aaKnown RBP9.61□□□□□ -0.87
VRK3-209ENST00000594948 FAM19A3Q7Z5A8 133 aa9.61□□□□□ -0.87
VRK3-209ENST00000594948 ZNF702PQ9H963 129 aa9.61□□□□□ -0.87
VRK3-209ENST00000594948 BEX4Q9NWD9 120 aaPredicted RBP9.61□□□□□ -0.87
VRK3-209ENST00000594948 TEX49A0A1B0GTD5 131 aa9.61□□□□□ -0.87
VRK3-209ENST00000594948 Q6ZSN1 163 aa9.61□□□□□ -0.87
VRK3-209ENST00000594948 COPS9Q8WXC6 57 aa9.61□□□□□ -0.87
VRK3-209ENST00000594948 AKAP6Q13023 2319 aa9.6□□□□□ -0.87
VRK3-209ENST00000594948 GAGE5Q13069 117 aa9.6□□□□□ -0.87
VRK3-209ENST00000594948 GAGE6Q13070 117 aa9.6□□□□□ -0.87
VRK3-209ENST00000594948 CIRBPQ14011 172 aaKnown RBP9.6□□□□□ -0.87
VRK3-209ENST00000594948 C11orf72Q8NBR9 251 aa9.6□□□□□ -0.87
VRK3-209ENST00000594948 PPDPFQ9H3Y8 114 aa9.6□□□□□ -0.87
VRK3-209ENST00000594948 FSHBP01225 129 aa9.59□□□□□ -0.87
VRK3-209ENST00000594948 Q6YL49 198 aa9.59□□□□□ -0.87
VRK3-209ENST00000594948 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.59□□□□□ -0.88
VRK3-209ENST00000594948 TRAV4A0A0B4J268 109 aa9.59□□□□□ -0.88
VRK3-209ENST00000594948 IGLV5-39A0A0G2JS06 123 aa9.59□□□□□ -0.88
VRK3-209ENST00000594948 IGKV2-29A2NJV5 120 aaPredicted RBP9.59□□□□□ -0.88
VRK3-209ENST00000594948 NHLRC4P0CG21 123 aaPredicted RBP9.59□□□□□ -0.88
VRK3-209ENST00000594948 NDUFV3P56181 108 aaKnown RBP9.59□□□□□ -0.88
VRK3-209ENST00000594948 RNASE13Q5GAN3 156 aaKnown RBP9.59□□□□□ -0.88
VRK3-209ENST00000594948 PEMTQ9UBM1 199 aa9.59□□□□□ -0.88
VRK3-209ENST00000594948 RELNP78509 3460 aa9.58□□□□□ -0.88
VRK3-209ENST00000594948 A0A096LNT2 108 aa9.58□□□□□ -0.88
VRK3-209ENST00000594948 HERVK_113P63121 156 aa9.58□□□□□ -0.88
VRK3-209ENST00000594948 C15orf53Q8NAA6 179 aa9.58□□□□□ -0.88
VRK3-209ENST00000594948 TMEM101Q96IK0 257 aa9.58□□□□□ -0.88
VRK3-209ENST00000594948 CDKN2A-AS1Q9UH64 79 aa9.58□□□□□ -0.88
VRK3-209ENST00000594948 INSP01308 110 aa9.57□□□□□ -0.88
VRK3-209ENST00000594948 HTN1P15515 57 aa9.57□□□□□ -0.88
VRK3-209ENST00000594948 TTC32Q5I0X7 151 aa9.57□□□□□ -0.88
VRK3-209ENST00000594948 CRLF1O75462 422 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 SVIPQ8NHG7 77 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 MAP6D1Q9H9H5 199 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 CSDC2Q9Y534 153 aaKnown RBP9.56□□□□□ -0.88
VRK3-209ENST00000594948 A8MZ25 164 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 SLURP1P55000 103 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 Q8N2B8 174 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 CLEC2BQ92478 149 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 LINC01587Q99440 93 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 Q9UF83 564 aa9.56□□□□□ -0.88
VRK3-209ENST00000594948 DGAT2L7PQ6IED9 249 aa9.55□□□□□ -0.88
VRK3-209ENST00000594948 LINC00308Q8TCZ7 52 aa9.55□□□□□ -0.88
VRK3-209ENST00000594948 ACYP1P07311 99 aa9.54□□□□□ -0.88
VRK3-209ENST00000594948 CITED2Q99967 270 aaPredicted RBP9.54□□□□□ -0.88
VRK3-209ENST00000594948 ASH1LQ9NR48 2969 aaKnown RBP9.54□□□□□ -0.88
VRK3-209ENST00000594948 IGHV3OR16-12A0A075B7B8 117 aa9.54□□□□□ -0.88
VRK3-209ENST00000594948 COX7A2LO14548 114 aa9.54□□□□□ -0.88
VRK3-209ENST00000594948 NPC2P61916 151 aa9.54□□□□□ -0.88
VRK3-209ENST00000594948 Q6ZSV7 163 aa9.54□□□□□ -0.88
VRK3-209ENST00000594948 IL17DQ8TAD2 202 aa9.54□□□□□ -0.88
VRK3-209ENST00000594948 IGHV3-38A0A0C4DH36 116 aa9.53□□□□□ -0.88
VRK3-209ENST00000594948 TRBV10-1A0A0K0K1A3 114 aa9.53□□□□□ -0.88
VRK3-209ENST00000594948 LINC00242Q5T6M2 205 aa9.53□□□□□ -0.88
VRK3-209ENST00000594948 C4orf3Q8WVX3 66 aa9.53□□□□□ -0.88
VRK3-209ENST00000594948 TRBV7-7A0A0K0K1E9 115 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 GAGE12JA6NER3 117 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 GAGE7O76087 117 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 GAGE12FP0CL80 117 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 GAGE12GP0CL81 117 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 GAGE12IP0CL82 117 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 HERV-K104P63124 156 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 GAGE4Q13068 117 aa9.52□□□□□ -0.89
VRK3-209ENST00000594948 SHISA2Q6UWI4 295 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms