RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TSKUQ8WUA8 353 aa6.94□□□□□ -1.3
LIG3-212ENST00000590181 TMEM243Q9BU79 118 aa6.94□□□□□ -1.3
LIG3-212ENST00000590181 A0A1B0GUT8 65 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 UBE2L6O14933 153 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 SSTP61278 116 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 HAMPP81172 84 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 TMEM241Q24JQ0 296 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 MPV17L2Q567V2 206 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 ENHOQ6UWT2 76 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 NTM-AS1Q6ZSK4 140 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 LINC01551Q86U37 167 aa6.93□□□□□ -1.3
LIG3-212ENST00000590181 A0A1B0GW15 77 aa6.92□□□□□ -1.3
LIG3-212ENST00000590181 NKX2-5P52952 324 aaPredicted RBP6.92□□□□□ -1.3
LIG3-212ENST00000590181 RBX1P62877 108 aa6.92□□□□□ -1.3
LIG3-212ENST00000590181 SMAGPQ0VAQ4 97 aa6.92□□□□□ -1.3
LIG3-212ENST00000590181 GTSF1Q8WW33 167 aa6.92□□□□□ -1.3
LIG3-212ENST00000590181 TRBV6-5A0A0K0K1A5 114 aa6.91□□□□□ -1.3
LIG3-212ENST00000590181 SRP19P09132 144 aaKnown RBP6.91□□□□□ -1.3
LIG3-212ENST00000590181 Q8N3U1 123 aa6.91□□□□□ -1.3
LIG3-212ENST00000590181 BAALCQ8WXS3 180 aa6.91□□□□□ -1.3
LIG3-212ENST00000590181 MRAP2Q96G30 205 aa6.91□□□□□ -1.3
LIG3-212ENST00000590181 TMEM191AQ9H0A3 160 aa6.91□□□□□ -1.3
LIG3-212ENST00000590181 DNAH8Q96JB1 4490 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 HIGD1CA8MV81 97 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 ZNF25P17030 456 aaPredicted RBP6.9□□□□□ -1.3
LIG3-212ENST00000590181 AMTP48728 403 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 CEBPGP53567 150 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 REG3AQ06141 175 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 RIGQ13278 110 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 CFAP161Q6P656 301 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 Q6ZSA8 131 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 LINC00269Q8N2A0 174 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 GATD1Q8NB37 220 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 NAT8BQ9UHF3 227 aa6.9□□□□□ -1.3
LIG3-212ENST00000590181 I3L3M4 83 aa6.89□□□□□ -1.31
LIG3-212ENST00000590181 TCAPO15273 167 aa6.89□□□□□ -1.31
LIG3-212ENST00000590181 S100A8P05109 93 aa6.89□□□□□ -1.31
LIG3-212ENST00000590181 GAGE6Q13070 117 aa6.89□□□□□ -1.31
LIG3-212ENST00000590181 NAT8Q9UHE5 227 aa6.89□□□□□ -1.31
LIG3-212ENST00000590181 LINC00862A6NCI5 91 aa6.88□□□□□ -1.31
LIG3-212ENST00000590181 PPP1R2P9O14990 202 aa6.88□□□□□ -1.31
LIG3-212ENST00000590181 CCL25O15444 150 aa6.88□□□□□ -1.31
LIG3-212ENST00000590181 PLA2G1BP04054 148 aaKnown RBP6.88□□□□□ -1.31
LIG3-212ENST00000590181 ST20Q9HBF5 79 aa6.88□□□□□ -1.31
LIG3-212ENST00000590181 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.87□□□□□ -1.31
LIG3-212ENST00000590181 TRBV27A0A0K0K1C4 114 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 SDHAF1A6NFY7 115 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 APCSP02743 223 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 PMCHP20382 165 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 AMMECR1LQ6DCA0 310 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 ISOC2Q96AB3 205 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 TMEM101Q96IK0 257 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 BTF3L4Q96K17 158 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 V9GYV3 84 aa6.87□□□□□ -1.31
LIG3-212ENST00000590181 A0A1B0GVG6 124 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 SMIM27A0A1W2PRY6 76 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 USP17L23D6RBM5 183 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 VCYO14598 125 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 LECT2O14960 151 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 RAB4AP20338 218 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 RAB14P61106 215 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 WFDC2Q14508 124 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 C20orf203Q8NBC4 194 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 AP5S1Q9NUS5 200 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 PKIGQ9Y2B9 76 aa6.86□□□□□ -1.31
LIG3-212ENST00000590181 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.85□□□□□ -1.31
LIG3-212ENST00000590181 F8W036 122 aa6.85□□□□□ -1.31
LIG3-212ENST00000590181 POLR2KP53803 58 aaKnown RBP6.85□□□□□ -1.31
LIG3-212ENST00000590181 CNBPP62633 177 aaKnown RBP6.85□□□□□ -1.31
LIG3-212ENST00000590181 RPL23P62829 140 aaKnown RBP6.85□□□□□ -1.31
LIG3-212ENST00000590181 C9orf163Q8N9P6 203 aa6.85□□□□□ -1.31
LIG3-212ENST00000590181 NUP35Q8NFH5 326 aa6.85□□□□□ -1.31
LIG3-212ENST00000590181 TMEM18Q96B42 140 aa6.85□□□□□ -1.31
LIG3-212ENST00000590181 CHAC1Q9BUX1 264 aa6.85□□□□□ -1.31
LIG3-212ENST00000590181 TRBV24-1A0A075B6N3 115 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 TRAV26-2A0A0B4J265 109 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 HLA-DQA1P01909 254 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 PPBPP02775 128 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 RPL32P62910 135 aaKnown RBP6.84□□□□□ -1.31
LIG3-212ENST00000590181 PNRC1Q12796 327 aaPredicted RBP6.84□□□□□ -1.31
LIG3-212ENST00000590181 ADIRFQ15847 76 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 KRTAP26-1Q6PEX3 210 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 MRPL52Q86TS9 123 aaKnown RBP6.84□□□□□ -1.31
LIG3-212ENST00000590181 KIR2DL4Q99706 377 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 C20orf78Q9BR46 151 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 CSDC2Q9Y534 153 aaKnown RBP6.84□□□□□ -1.31
LIG3-212ENST00000590181 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 LRP1Q07954 4544 aaKnown RBP6.84□□□□□ -1.31
LIG3-212ENST00000590181 PKHD1L1Q86WI1 4243 aa6.84□□□□□ -1.31
LIG3-212ENST00000590181 IGLV4-60A0A075B6I1 120 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 KRTAP29-1A8MX34 341 aaPredicted RBP6.83□□□□□ -1.32
LIG3-212ENST00000590181 PHOX2AO14813 284 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 FGF6P10767 208 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 ESDP10768 282 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 FAM104BQ5XKR9 115 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 ATP5L2Q7Z4Y8 100 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 OR5A1Q8NGJ0 315 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 RPL39LQ96EH5 51 aaKnown RBP6.83□□□□□ -1.32
LIG3-212ENST00000590181 RNF185Q96GF1 192 aa6.83□□□□□ -1.32
LIG3-212ENST00000590181 PRSS1P07477 247 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms