RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 DEFB104AQ8WTQ1 72 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 SPANXA1Q9NS26 97 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 ZNF462Q96JM2 2506 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 IGLV4-3A0A075B6K6 122 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3-73A0A0B4J1V6 119 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 TMEM223A0PJW6 202 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 SMAGPQ0VAQ4 97 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 COTL1Q14019 142 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 Q6ZSV7 163 aa5.4□□□□□ -1.55
ZNF540-206ENST00000589117 TMEM238C9JI98 176 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 CCL24O00175 119 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3-53P01767 116 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 RBMY1A1P0DJD3 496 aaKnown RBP5.39□□□□□ -1.55
ZNF540-206ENST00000589117 RBMY1CP0DJD4 496 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 UBE2D1P51668 147 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 RBMY1FQ15415 496 aaKnown RBP5.39□□□□□ -1.55
ZNF540-206ENST00000589117 CFAP126Q5VTH2 177 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 UTP20O75691 2785 aaKnown RBP5.39□□□□□ -1.55
ZNF540-206ENST00000589117 NAV2Q8IVL1 2488 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 TRBV20-1A0A075B6N2 111 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 DNAJC9-AS1A6NH13 148 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 H3BMG7 143 aa5.39□□□□□ -1.55
ZNF540-206ENST00000589117 TSSC4Q9Y5U2 329 aaPredicted RBP5.39□□□□□ -1.55
ZNF540-206ENST00000589117 CREBBPQ92793 2442 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 LOC107984156A0A0G2JMH3 177 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 APOMO95445 188 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 MRPS36P82909 103 aaKnown RBP5.38□□□□□ -1.55
ZNF540-206ENST00000589117 ARL17AQ8IVW1 177 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 AMELXQ99217 191 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 CITED2Q99967 270 aaPredicted RBP5.38□□□□□ -1.55
ZNF540-206ENST00000589117 TIMM21Q9BVV7 248 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 UBR5O95071 2799 aaPredicted RBP5.38□□□□□ -1.55
ZNF540-206ENST00000589117 DOPEY2Q9Y3R5 2298 aa5.38□□□□□ -1.55
ZNF540-206ENST00000589117 LRRK2Q5S007 2527 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 A0A0J9YXV3 536 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 RBMY1BA6NDE4 496 aaKnown RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 RBMY1EA6NEQ0 496 aaKnown RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 RS1O15537 224 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 SAP30O75446 220 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3-30P01768 117 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 RBMY1DP0C7P1 496 aaKnown RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3-30-5P0DP03 117 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 ZNF22P17026 224 aaPredicted RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 NDUFA11Q86Y39 141 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 WWC2-AS2Q96NR7 200 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 OPRPNQ99935 248 aaPredicted RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 GEMIN7Q9H840 131 aaKnown RBP5.37□□□□□ -1.55
ZNF540-206ENST00000589117 XCL2Q9UBD3 114 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 PRO1854Q9UHT4 67 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 CR1P17927 2039 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 TINCRA0A1B0GVN0 87 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 KRTAP1-3Q8IUG1 177 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 C11orf72Q8NBR9 251 aa5.37□□□□□ -1.55
ZNF540-206ENST00000589117 AGRNO00468 2067 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 SCGB1C2P0DMR2 95 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 AZU1P20160 251 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 C10orf126Q8N4M7 172 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 WFDC11Q8NEX6 87 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3OR16-12A0A075B7B8 117 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 TRBV10-1A0A0K0K1A3 114 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 CIDEAO60543 219 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 PROK1P58294 105 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 RPL36AP83881 106 aaKnown RBP5.36□□□□□ -1.55
ZNF540-206ENST00000589117 RPL36ALQ969Q0 106 aaKnown RBP5.36□□□□□ -1.55
ZNF540-206ENST00000589117 C1QTNF4Q9BXJ3 329 aa5.36□□□□□ -1.55
ZNF540-206ENST00000589117 POLQO75417 2590 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 TRGV1A0A0A0MS02 117 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV1-58A0A0C4DH39 117 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 TEX48A0A1B0GUV7 120 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 TSPAN13O95857 204 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 CFC1BP0CG36 223 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 CFC1P0CG37 223 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3-30-3P0DP02 117 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 PSMB2P49721 201 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 TSPEAR-AS2P59090 65 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 DAZ2Q13117 558 aaKnown RBP5.35□□□□□ -1.55
ZNF540-206ENST00000589117 WFDC2Q14508 124 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 ODF3L2Q3SX64 289 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 DAZ4Q86SG3 579 aaKnown RBP5.35□□□□□ -1.55
ZNF540-206ENST00000589117 ZNF418Q8TF45 676 aaPredicted RBP5.35□□□□□ -1.55
ZNF540-206ENST00000589117 TMEM263Q8WUH6 116 aaKnown RBP5.35□□□□□ -1.55
ZNF540-206ENST00000589117 FAM110AQ9BQ89 295 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 C16orf95Q9H693 158 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 DAZ3Q9NR90 486 aaKnown RBP5.35□□□□□ -1.55
ZNF540-206ENST00000589117 YAE1D1Q9NRH1 226 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 UBE2D4Q9Y2X8 147 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 FBN2P35556 2912 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 SORL1Q92673 2214 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 USP24Q9UPU5 2620 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 MXRA5Q9NR99 2828 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 PTPN13Q12923 2485 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 CSMD2Q7Z408 3487 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 CENPEQ02224 2701 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 CHCHD7Q9BUK0 85 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 ERG28Q9UKR5 140 aa5.35□□□□□ -1.55
ZNF540-206ENST00000589117 IGHV3-64A0A075B6Q5 118 aa5.34□□□□□ -1.55
ZNF540-206ENST00000589117 A0A0B4J2C4 111 aa5.34□□□□□ -1.55
ZNF540-206ENST00000589117 PRSS2P07478 247 aa5.34□□□□□ -1.55
ZNF540-206ENST00000589117 UBE2D3P61077 147 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms