RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SEC11AP67812 179 aa8.13□□□□□ -1.11
LIG3-204ENST00000585740 RRN3P1Q2M238 152 aa8.13□□□□□ -1.11
LIG3-204ENST00000585740 PYGO1Q9Y3Y4 419 aa8.13□□□□□ -1.11
LIG3-204ENST00000585740 P0DMU3 169 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 FAM231AP0DMU4 169 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 FAM231CP0DMU5 169 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 RPL39P62891 51 aaKnown RBP8.12□□□□□ -1.11
LIG3-204ENST00000585740 PCP2Q8IVA1 136 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 OR11H2Q8NH07 326 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 OVOL2Q9BRP0 275 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 CST9LQ9H4G1 147 aa8.12□□□□□ -1.11
LIG3-204ENST00000585740 IGKV2D-26A0A0A0MRZ7 120 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 E9PLD3 99 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 COTL1Q14019 142 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 CSNK1G2-AS1Q8NCQ2 148 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 CITED1Q99966 193 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 WFDC10AQ9H1F0 79 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 TP73-AS1Q9UF72 201 aa8.11□□□□□ -1.11
LIG3-204ENST00000585740 TGP01266 2768 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 A6NDN8 102 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 K7EQD1 137 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 TCTAP57738 103 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 RPL36AP83881 106 aaKnown RBP8.1□□□□□ -1.11
LIG3-204ENST00000585740 SMAGPQ0VAQ4 97 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 TAL2Q16559 108 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 NFE4Q86UQ8 179 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.1□□□□□ -1.11
LIG3-204ENST00000585740 ORAOV1Q8WV07 137 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 RPL36ALQ969Q0 106 aaKnown RBP8.1□□□□□ -1.11
LIG3-204ENST00000585740 VCX2Q9H322 139 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 SPANXA1Q9NS26 97 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 ZMAT5Q9UDW3 170 aaKnown RBP8.1□□□□□ -1.11
LIG3-204ENST00000585740 MGAM2Q2M2H8 2515 aa8.1□□□□□ -1.11
LIG3-204ENST00000585740 IGLV4-69A0A075B6H9 119 aa8.09□□□□□ -1.11
LIG3-204ENST00000585740 IGLV4-3A0A075B6K6 122 aa8.09□□□□□ -1.11
LIG3-204ENST00000585740 C11orf86A6NJI1 115 aa8.09□□□□□ -1.11
LIG3-204ENST00000585740 ZNF25P17030 456 aaPredicted RBP8.09□□□□□ -1.11
LIG3-204ENST00000585740 GAGE1Q13065 139 aa8.09□□□□□ -1.11
LIG3-204ENST00000585740 Q6ZSN1 163 aa8.09□□□□□ -1.11
LIG3-204ENST00000585740 Q6ZTI0 123 aa8.09□□□□□ -1.11
LIG3-204ENST00000585740 NOP10Q9NPE3 64 aaKnown RBP8.09□□□□□ -1.11
LIG3-204ENST00000585740 TENM1Q9UKZ4 2725 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 TRBV7-3A0A075B6L6 115 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 TRBV25-1A0A075B6N4 114 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 TRAV8-6A0A0B4J262 113 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 MYMXA0A1B0GTQ4 84 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 SMIM9A6NGZ8 99 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 DAZ4Q86SG3 579 aaKnown RBP8.08□□□□□ -1.12
LIG3-204ENST00000585740 CHCHD7Q9BUK0 85 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 CHAC1Q9BUX1 264 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 TIMM21Q9BVV7 248 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 DAZ3Q9NR90 486 aaKnown RBP8.08□□□□□ -1.12
LIG3-204ENST00000585740 COX11Q9Y6N1 276 aa8.08□□□□□ -1.12
LIG3-204ENST00000585740 PLAC8L1A1L4L8 177 aa8.07□□□□□ -1.12
LIG3-204ENST00000585740 ZNRF2Q8NHG8 242 aa8.07□□□□□ -1.12
LIG3-204ENST00000585740 ZNF479Q96JC4 524 aa8.07□□□□□ -1.12
LIG3-204ENST00000585740 AMELXQ99217 191 aa8.07□□□□□ -1.12
LIG3-204ENST00000585740 PRADC1Q9BSG0 188 aa8.07□□□□□ -1.12
LIG3-204ENST00000585740 TRGV2A0A075B6R0 118 aa8.06□□□□□ -1.12
LIG3-204ENST00000585740 TRBV6-4A0A1B0GX49 114 aa8.06□□□□□ -1.12
LIG3-204ENST00000585740 LINC00469Q8N7U9 141 aa8.06□□□□□ -1.12
LIG3-204ENST00000585740 WFDC9Q8NEX5 89 aa8.06□□□□□ -1.12
LIG3-204ENST00000585740 KIR2DL5BQ8NHK3 375 aa8.06□□□□□ -1.12
LIG3-204ENST00000585740 DEFB104AQ8WTQ1 72 aa8.06□□□□□ -1.12
LIG3-204ENST00000585740 GAGE12BA1L429 117 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 H3BRM9 83 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 TAX1BP3O14907 124 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 GAGE7O76087 117 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 GAGE12FP0CL80 117 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 GAGE12GP0CL81 117 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 GAGE12IP0CL82 117 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 APOC4P55056 127 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 UBE2D3P61077 147 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 UBE2D2P62837 147 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 MRPS36P82909 103 aaKnown RBP8.05□□□□□ -1.12
LIG3-204ENST00000585740 TMEM170BQ5T4T1 132 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 MAPKAPK5-AS1Q8N8E1 139 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 PHLDA1Q8WV24 401 aaPredicted RBP8.05□□□□□ -1.12
LIG3-204ENST00000585740 UBE2D4Q9Y2X8 147 aa8.05□□□□□ -1.12
LIG3-204ENST00000585740 CEND1Q8N111 149 aa8.04□□□□□ -1.12
LIG3-204ENST00000585740 C3orf56Q8N813 242 aa8.04□□□□□ -1.12
LIG3-204ENST00000585740 PLEKHB2Q96CS7 222 aa8.04□□□□□ -1.12
LIG3-204ENST00000585740 TM2D2Q9BX73 214 aa8.04□□□□□ -1.12
LIG3-204ENST00000585740 TTTY13Q9BZ97 58 aa8.04□□□□□ -1.12
LIG3-204ENST00000585740 GTSF1LQ9H1H1 148 aa8.04□□□□□ -1.12
LIG3-204ENST00000585740 PKD1L1Q8TDX9 2849 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 TRGV4A0A0C4DH28 118 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 IGHV3-38A0A0C4DH36 116 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 TMEM223A0PJW6 202 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 ZNF815PA8K554 130 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 LEPROTO15243 131 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 GCSHP23434 173 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 DGAT2L7PQ6IED9 249 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 LINC00612Q8N6U2 182 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 SLC25A29Q8N8R3 303 aa8.03□□□□□ -1.12
LIG3-204ENST00000585740 OPRPNQ99935 248 aaPredicted RBP8.03□□□□□ -1.12
LIG3-204ENST00000585740 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.02□□□□□ -1.13
LIG3-204ENST00000585740 TINCRA0A1B0GVN0 87 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 IGKV2-29A2NJV5 120 aaPredicted RBP8.02□□□□□ -1.13
LIG3-204ENST00000585740 GAGE12JA6NER3 117 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms