RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MRPL54Q6P161 138 aaKnown RBP12.96□□□□□ -0.33
SS18-209ENST00000578595 Q8N814 137 aa12.96□□□□□ -0.33
SS18-209ENST00000578595 BAALCQ8WXS3 180 aa12.96□□□□□ -0.33
SS18-209ENST00000578595 ST20Q9HBF5 79 aa12.96□□□□□ -0.33
SS18-209ENST00000578595 SMKR1H3BMG3 65 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 HLA-DQA1P01909 254 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 RAB4AP20338 218 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 IFITM2Q01629 132 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 LINC00269Q8N2A0 174 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 MRAP2Q96G30 205 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 RNF185Q96GF1 192 aa12.95□□□□□ -0.34
SS18-209ENST00000578595 PPP1R2P9O14990 202 aa12.94□□□□□ -0.34
SS18-209ENST00000578595 GAS8-AS1O95177 125 aa12.94□□□□□ -0.34
SS18-209ENST00000578595 PNRC1Q12796 327 aaPredicted RBP12.94□□□□□ -0.34
SS18-209ENST00000578595 AMMECR1LQ6DCA0 310 aa12.94□□□□□ -0.34
SS18-209ENST00000578595 ENHOQ6UWT2 76 aa12.94□□□□□ -0.34
SS18-209ENST00000578595 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.93□□□□□ -0.34
SS18-209ENST00000578595 WFDC2Q14508 124 aa12.93□□□□□ -0.34
SS18-209ENST00000578595 MIAQ16674 131 aa12.93□□□□□ -0.34
SS18-209ENST00000578595 A0A1B0GW15 77 aa12.92□□□□□ -0.34
SS18-209ENST00000578595 I3L3M4 83 aa12.92□□□□□ -0.34
SS18-209ENST00000578595 S100A8P05109 93 aa12.92□□□□□ -0.34
SS18-209ENST00000578595 RPS10P46783 165 aaKnown RBP12.92□□□□□ -0.34
SS18-209ENST00000578595 HBBP68871 147 aa12.92□□□□□ -0.34
SS18-209ENST00000578595 NTN5Q8WTR8 489 aaPredicted RBP12.92□□□□□ -0.34
SS18-209ENST00000578595 TMEM242Q9NWH2 141 aa12.92□□□□□ -0.34
SS18-209ENST00000578595 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.91□□□□□ -0.34
SS18-209ENST00000578595 IGKV3OR2-268A0A0C4DH90 116 aa12.91□□□□□ -0.34
SS18-209ENST00000578595 IGKV2-29A2NJV5 120 aaPredicted RBP12.91□□□□□ -0.34
SS18-209ENST00000578595 MT-ND4LP03901 98 aa12.91□□□□□ -0.34
SS18-209ENST00000578595 GCSHP23434 173 aa12.91□□□□□ -0.34
SS18-209ENST00000578595 REG3AQ06141 175 aa12.91□□□□□ -0.34
SS18-209ENST00000578595 RNASEKQ6P5S7 137 aaKnown RBP12.91□□□□□ -0.34
SS18-209ENST00000578595 MAPKAPK5-AS1Q8N8E1 139 aa12.91□□□□□ -0.34
SS18-209ENST00000578595 IGLV4-60A0A075B6I1 120 aa12.9□□□□□ -0.34
SS18-209ENST00000578595 IGLV10-54A0A075B6I4 117 aa12.9□□□□□ -0.34
SS18-209ENST00000578595 TRBV6-5A0A0K0K1A5 114 aa12.9□□□□□ -0.34
SS18-209ENST00000578595 CDK2AP2O75956 126 aa12.9□□□□□ -0.34
SS18-209ENST00000578595 MRPL51Q4U2R6 128 aaKnown RBP12.9□□□□□ -0.34
SS18-209ENST00000578595 C20orf203Q8NBC4 194 aa12.9□□□□□ -0.34
SS18-209ENST00000578595 TMEM70Q9BUB7 260 aa12.9□□□□□ -0.34
SS18-209ENST00000578595 F8W036 122 aa12.89□□□□□ -0.35
SS18-209ENST00000578595 FAM104BQ5XKR9 115 aa12.89□□□□□ -0.35
SS18-209ENST00000578595 UQCC3Q6UW78 93 aa12.89□□□□□ -0.35
SS18-209ENST00000578595 A0A1B0GUV1 79 aa12.88□□□□□ -0.35
SS18-209ENST00000578595 PPP1R17O96001 155 aa12.88□□□□□ -0.35
SS18-209ENST00000578595 FCER1GP30273 86 aa12.88□□□□□ -0.35
SS18-209ENST00000578595 CKS2P33552 79 aa12.88□□□□□ -0.35
SS18-209ENST00000578595 COMMD7Q86VX2 200 aa12.88□□□□□ -0.35
SS18-209ENST00000578595 ANAPC16Q96DE5 110 aa12.88□□□□□ -0.35
SS18-209ENST00000578595 KRTAP10-1P60331 282 aa12.87□□□□□ -0.35
SS18-209ENST00000578595 PRR34Q9NV39 138 aa12.87□□□□□ -0.35
SS18-209ENST00000578595 LRP1BQ9NZR2 4599 aa12.86□□□□□ -0.35
SS18-209ENST00000578595 TSHBP01222 138 aa12.86□□□□□ -0.35
SS18-209ENST00000578595 SUMO2P61956 95 aaKnown RBP12.86□□□□□ -0.35
SS18-209ENST00000578595 BTF3L4Q96K17 158 aa12.86□□□□□ -0.35
SS18-209ENST00000578595 DNAH5Q8TE73 4624 aa12.86□□□□□ -0.35
SS18-209ENST00000578595 FGF6P10767 208 aa12.85□□□□□ -0.35
SS18-209ENST00000578595 C14orf177Q52M58 125 aa12.85□□□□□ -0.35
SS18-209ENST00000578595 TMEM101Q96IK0 257 aa12.85□□□□□ -0.35
SS18-209ENST00000578595 KIR2DL4Q99706 377 aa12.85□□□□□ -0.35
SS18-209ENST00000578595 HERC2O95714 4834 aa12.85□□□□□ -0.35
SS18-209ENST00000578595 A0A1B0GXF2 115 aa12.84□□□□□ -0.35
SS18-209ENST00000578595 C7orf77A4D0Y5 90 aa12.84□□□□□ -0.35
SS18-209ENST00000578595 VCYO14598 125 aa12.84□□□□□ -0.35
SS18-209ENST00000578595 POLR2KP53803 58 aaKnown RBP12.84□□□□□ -0.35
SS18-209ENST00000578595 ATP5L2Q7Z4Y8 100 aa12.84□□□□□ -0.35
SS18-209ENST00000578595 NRACQ8N912 160 aa12.84□□□□□ -0.35
SS18-209ENST00000578595 TRAV8-4A0A0B4J246 113 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 TRBV27A0A0K0K1C4 114 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 TMEM218A2RU14 115 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 LINC00862A6NCI5 91 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 D6R8Y8 96 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 USP17L23D6RBM5 183 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 H7C423 109 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 ADCYAP1P18509 176 aa12.83□□□□□ -0.36
SS18-209ENST00000578595 OR5A1Q8NGJ0 315 aa12.82□□□□□ -0.36
SS18-209ENST00000578595 TNFRSF6BO95407 300 aa12.81□□□□□ -0.36
SS18-209ENST00000578595 ZNF25P17030 456 aaPredicted RBP12.81□□□□□ -0.36
SS18-209ENST00000578595 LINC01620Q4KN68 170 aa12.8□□□□□ -0.36
SS18-209ENST00000578595 DGAT2L7PQ6IED9 249 aa12.8□□□□□ -0.36
SS18-209ENST00000578595 NPYP01303 97 aa12.79□□□□□ -0.36
SS18-209ENST00000578595 ESDP10768 282 aa12.79□□□□□ -0.36
SS18-209ENST00000578595 HAMPP81172 84 aa12.79□□□□□ -0.36
SS18-209ENST00000578595 ORMDL3Q8N138 153 aa12.79□□□□□ -0.36
SS18-209ENST00000578595 C20orf78Q9BR46 151 aa12.79□□□□□ -0.36
SS18-209ENST00000578595 PPBPP02775 128 aa12.78□□□□□ -0.36
SS18-209ENST00000578595 SEC11CQ9BY50 192 aa12.78□□□□□ -0.36
SS18-209ENST00000578595 RYR1P21817 5038 aa12.78□□□□□ -0.36
SS18-209ENST00000578595 GAGE12HA6NDE8 117 aa12.77□□□□□ -0.37
SS18-209ENST00000578595 SMAGPQ0VAQ4 97 aa12.77□□□□□ -0.37
SS18-209ENST00000578595 TMEM136Q6ZRR5 245 aa12.77□□□□□ -0.37
SS18-209ENST00000578595 PRELID3AQ96N28 172 aa12.77□□□□□ -0.37
SS18-209ENST00000578595 SMIM2Q9BVW6 85 aa12.77□□□□□ -0.37
SS18-209ENST00000578595 HSPG2P98160 4391 aa12.76□□□□□ -0.37
SS18-209ENST00000578595 APOBP04114 4563 aaKnown RBP12.76□□□□□ -0.37
SS18-209ENST00000578595 KRTAP26-1Q6PEX3 210 aa12.76□□□□□ -0.37
SS18-209ENST00000578595 TMEM18Q96B42 140 aa12.76□□□□□ -0.37
SS18-209ENST00000578595 TRBV24-1A0A075B6N3 115 aa12.75□□□□□ -0.37
SS18-209ENST00000578595 CHCHD10Q8WYQ3 142 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms