RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DNAH10OSP0CZ25 163 aa11.67□□□□□ -0.54
NUP88-210ENST00000574867 AMTP48728 403 aa11.67□□□□□ -0.54
NUP88-210ENST00000574867 COLCA2A8K830 154 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 TSHBP01222 138 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 ALKBH7Q9BT30 221 aaPredicted RBP11.66□□□□□ -0.54
NUP88-210ENST00000574867 TMEM243Q9BU79 118 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 DNAH1Q9P2D7 4330 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 VPS13DQ5THJ4 4388 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 LINC01556Q5JQF7 62 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 CHCHD5Q9BSY4 110 aa11.66□□□□□ -0.54
NUP88-210ENST00000574867 K7EP13 123 aa11.65□□□□□ -0.54
NUP88-210ENST00000574867 RAB5AP20339 215 aa11.65□□□□□ -0.54
NUP88-210ENST00000574867 FCER1GP30273 86 aa11.65□□□□□ -0.54
NUP88-210ENST00000574867 TTC32Q5I0X7 151 aa11.65□□□□□ -0.54
NUP88-210ENST00000574867 CHCHD7Q9BUK0 85 aa11.65□□□□□ -0.54
NUP88-210ENST00000574867 NIT1Q86X76 327 aa11.64□□□□□ -0.55
NUP88-210ENST00000574867 DEFB104AQ8WTQ1 72 aa11.64□□□□□ -0.55
NUP88-210ENST00000574867 NXT2Q9NPJ8 142 aaKnown RBP11.64□□□□□ -0.55
NUP88-210ENST00000574867 IGLV2-18A0A075B6J9 118 aa11.63□□□□□ -0.55
NUP88-210ENST00000574867 TRAV9-2A0A087WT02 112 aa11.63□□□□□ -0.55
NUP88-210ENST00000574867 NBDYA0A0U1RRE5 68 aa11.63□□□□□ -0.55
NUP88-210ENST00000574867 UBE2L6O14933 153 aa11.63□□□□□ -0.55
NUP88-210ENST00000574867 Q8N8P6 123 aa11.63□□□□□ -0.55
NUP88-210ENST00000574867 A0A087WX48 190 aa11.62□□□□□ -0.55
NUP88-210ENST00000574867 LOC389332A0A1B0GUA5 103 aa11.62□□□□□ -0.55
NUP88-210ENST00000574867 H7C423 109 aa11.62□□□□□ -0.55
NUP88-210ENST00000574867 K7EMI3 77 aa11.62□□□□□ -0.55
NUP88-210ENST00000574867 C10orf126Q8N4M7 172 aa11.62□□□□□ -0.55
NUP88-210ENST00000574867 ESDP10768 282 aa11.61□□□□□ -0.55
NUP88-210ENST00000574867 KMT2CQ8NEZ4 4911 aaKnown RBP11.61□□□□□ -0.55
NUP88-210ENST00000574867 TMEM262E9PQX1 116 aa11.61□□□□□ -0.55
NUP88-210ENST00000574867 GAGE6Q13070 117 aa11.6□□□□□ -0.55
NUP88-210ENST00000574867 IGHV3-30P01768 117 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 IGHV3-33P01772 117 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 TRGC2P03986 189 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 IGHV3-30-3P0DP02 117 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 IGHV3-30-5P0DP03 117 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 Q6ZR54 194 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 IFI27P40305 119 aaPredicted RBP11.59□□□□□ -0.55
NUP88-210ENST00000574867 MPV17L2Q567V2 206 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 PRSS3P2Q8NHM4 247 aa11.59□□□□□ -0.55
NUP88-210ENST00000574867 SACSQ9NZJ4 4579 aa11.58□□□□□ -0.55
NUP88-210ENST00000574867 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.58□□□□□ -0.56
NUP88-210ENST00000574867 IGKV2-29A2NJV5 120 aaPredicted RBP11.58□□□□□ -0.56
NUP88-210ENST00000574867 ORMDL2Q53FV1 153 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 C18orf32Q8TCD1 76 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 TMEM18Q96B42 140 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 A0A1B0GUV1 79 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 SMAGPQ0VAQ4 97 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 Q8N3U1 123 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 KRTAP1-5Q9BYS1 174 aa11.58□□□□□ -0.56
NUP88-210ENST00000574867 DNAH6Q9C0G6 4158 aa11.57□□□□□ -0.56
NUP88-210ENST00000574867 M0R2N4 97 aa11.57□□□□□ -0.56
NUP88-210ENST00000574867 ZNF25P17030 456 aaPredicted RBP11.57□□□□□ -0.56
NUP88-210ENST00000574867 BTF3P20290 206 aaKnown RBP11.57□□□□□ -0.56
NUP88-210ENST00000574867 RBX1P62877 108 aa11.57□□□□□ -0.56
NUP88-210ENST00000574867 AMMECR1LQ6DCA0 310 aa11.57□□□□□ -0.56
NUP88-210ENST00000574867 C20orf203Q8NBC4 194 aa11.57□□□□□ -0.56
NUP88-210ENST00000574867 LAGE3Q14657 143 aa11.56□□□□□ -0.56
NUP88-210ENST00000574867 FGF6P10767 208 aa11.56□□□□□ -0.56
NUP88-210ENST00000574867 MRPL52Q86TS9 123 aaKnown RBP11.56□□□□□ -0.56
NUP88-210ENST00000574867 FA2HQ7L5A8 372 aa11.55□□□□□ -0.56
NUP88-210ENST00000574867 Q8N976 141 aa11.55□□□□□ -0.56
NUP88-210ENST00000574867 LINC01546A6NGU7 62 aa11.55□□□□□ -0.56
NUP88-210ENST00000574867 IBA57-AS1B1ANH7 110 aa11.55□□□□□ -0.56
NUP88-210ENST00000574867 KMT2AQ03164 3969 aa11.54□□□□□ -0.56
NUP88-210ENST00000574867 ANGP03950 147 aaKnown RBP11.54□□□□□ -0.56
NUP88-210ENST00000574867 G0S2P27469 103 aa11.54□□□□□ -0.56
NUP88-210ENST00000574867 CTAG1AP78358 180 aa11.54□□□□□ -0.56
NUP88-210ENST00000574867 RNASEKQ6P5S7 137 aaKnown RBP11.54□□□□□ -0.56
NUP88-210ENST00000574867 RAB5BP61020 215 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 TMEM101Q96IK0 257 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 TIMM21Q9BVV7 248 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 KLK12Q9UKR0 248 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 RYR2Q92736 4967 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 AP5S1Q9NUS5 200 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 UBE2D4Q9Y2X8 147 aa11.53□□□□□ -0.56
NUP88-210ENST00000574867 CSDC2Q9Y534 153 aaKnown RBP11.53□□□□□ -0.56
NUP88-210ENST00000574867 HYDINQ4G0P3 5121 aa11.52□□□□□ -0.56
NUP88-210ENST00000574867 OR5A1Q8NGJ0 315 aa11.52□□□□□ -0.57
NUP88-210ENST00000574867 IGLV4-60A0A075B6I1 120 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 CRPP02741 224 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 RPL39P62891 51 aaKnown RBP11.51□□□□□ -0.57
NUP88-210ENST00000574867 C6orf223Q8N319 242 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 SPANXA1Q9NS26 97 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 CYSLTR1Q9Y271 337 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 TRAV8-3A0A0A6YYJ7 113 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 LINC00614P0C842 121 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 C1orf134Q5TEV5 83 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 C2orf66Q6UXQ4 117 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 NFE4Q86UQ8 179 aa11.51□□□□□ -0.57
NUP88-210ENST00000574867 LINC01549A6NIU2 74 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 Q0VG73 95 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 DGAT2L7PQ6IED9 249 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 PRR34Q9NV39 138 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 LINC00518Q8N0U6 118 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 LINC00269Q8N2A0 174 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 UBE2WQ96B02 151 aa11.5□□□□□ -0.57
NUP88-210ENST00000574867 CHCHD1Q96BP2 118 aaKnown RBP11.49□□□□□ -0.57
NUP88-210ENST00000574867 URB1-AS1Q96HZ7 61 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms